Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008227

Physical Location & Seq

Genomic Coordinates Forward (+)

2435795 .. 2437661

Gene Structure 1867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G07680.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGAAACTTTCGGTGTGTTTCACAAGGAAGATGATGAGCAGATGGATTTGCCTCCTGGTTTTAGGTTTCATCCAACAGACGAAGAACTCATAACCCACTATCTCCACAAGAAGGTTCTTGACCTTGGTTTCTCGGCTAAAGCTATTGGTGAGGTTGATTTGAACAAAGCTGAGCCATGGGAGTTGCCATATAAAGCAAAAATTGGTGAGAAAGAATGGTACTTTTTCTGTGTGAGGGATAGAAAGTATCCGACTGGTCTGAGGACTAACCGAGCAACTCAAGCCGGTTATTGGAAGGCGACAGGGAAGGATAAAGAGATCTTCCGAGGCAAATCGCTTGTTGGTATGAAGAAAACACTTGTTTTCTACAGAGGAAGAGCTCCTAAAGGCCAGAAAACAAATTGGGTGATGCATGAGTATAGGCTAGATGGAAAACTCTCTGCTCACAACTTGCCTAAAACCGCTAAGAATGAATGGGTGATCTGCAGGGTATTTCATAAAACTGCTGGAGGTAAGAAGATCCCGATTTCGACGTTAATCCGAATCGGTTCTTACGGAACCGGGTCTAGTTTACCACCTTTAACTGATTCTTCACCATACAACGACAAAACCAAGACCGAACCAGTTTACGTGCCCTGCTTCTCCAACCAAGCTGAAACTAGAGGAACAATACTCAATTGCTTCAGCAACCCTTCCCTTAGCTCCATCCAACCAGATTTTCTCCAGATGATTCCACTCTACCAACCTCAATCTCTCAACATTTCCGAGAGTTCCAATCCGGTTCTTACGCAAGAACAATCAGTTTTACAAGCGATGATGGAAAACAACAGAAGGCAGAACTTCAAAACATTGAGCATCTCGCAAGAAACCGGGGTTTCGAACACCGATAACTCATCGGTTTTTGAATTTGGGAGGAAGCGATTTGATCATCAAGAAGTTCCATCTCCCTCTTCCGGTCCGGTTGATCTTGAACCTTTCTGGAATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

329

Amino Acids

37.52

Weight (kDa)

8.94

Isoelectric Point (pI)

41.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	4 - 128	7.9e-50	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07680 AT5G07680 AT5G61430 AT5G61430
fragaria_vesca	FvH4_5g14670 FvH4_5g14670
malus_domestica	MD06G1196100.v1.1 MD14G1203000.v1.1
prunus_persica	Prupe.5G196000_v2.0.a1
pyrus_communis	pycom06g17320 pycom14g16800
rosa_chinensis	RchiOBHm_Chr7g0181751 RchiOBHm_Chr7g0181811
rosa_laevigata	RLG00000005172
rosa_multiflora	Rmu_sc0000988.1_g000005 Rmu_sc0004898.1_g000004
rosa_roxburghii	Rroxscaffold_3G00271760
rosa_rugosa	Rorug06G0443200
rosa_samantha	Rh7AG045700 Rh7BG045000 Rh7CG046400 Rh7DG045300
rosa_wichuraiana	Rw7G003810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	462
AclWI	GGATC	1 cut(s)	514
AcsI	RAATTY	1 cut(s)	905
AcuI	CTGAAG	1 cut(s)	667
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	3 cut(s)	112, 291, 953
AgsI	TTSAA	4 cut(s)	163, 844, 905, 971
AjnI	CCWGG	1 cut(s)	55
AjuI	GAANNNNNNNTTGG	2 cut(s)	702, 734
AluBI	AGCT	5 cut(s)	143, 170, 380, 653, 702
AluI	AGCT	5 cut(s)	143, 170, 380, 653, 702
Alw21I	GWGCWC	1 cut(s)	382
AlwI	GGATC	1 cut(s)	514
AoxI	GGCC	1 cut(s)	388
ApoI	RAATTY	1 cut(s)	905
Asp700I	GAANNNNTTC	1 cut(s)	547
AspS9I	GGNCC	1 cut(s)	956
AsuC2I	CCSGG	2 cut(s)	562, 871
AsuHPI	GGTGA	5 cut(s)	161, 218, 418, 490, 585
AsuII	TTCGAA	1 cut(s)	878
AvaII	GGWCC	1 cut(s)	956
BaeGI	GKGCMC	1 cut(s)	636
BanII	GRGCYC	1 cut(s)	382
Bbv12I	GWGCWC	1 cut(s)	382
BccI	CCATC	5 cut(s)	37, 422, 713, 811, 949
BciT130I	CCWGG	1 cut(s)	57
BciVI	GTATCC	1 cut(s)	258
BclI	TGATCA	1 cut(s)	925
BcnI	CCSGG	2 cut(s)	562, 871
BfaI	CTAG	3 cut(s)	425, 567, 660
BfmI	CTRYAG	2 cut(s)	367, 484
BfuI	GTATCC	1 cut(s)	258
BglII	AGATCT	1 cut(s)	318
BlpI	GCTNAGC	1 cut(s)	171
Bme1390I	CCNGG	3 cut(s)	57, 562, 871
Bme18I	GGWCC	1 cut(s)	956
BmgT120I	GGNCC	1 cut(s)	956
BmiI	GGNNCC	1 cut(s)	559
BmrFI	CCNGG	3 cut(s)	57, 562, 871
BmsI	GCATC	2 cut(s)	399, 864
BpmI	CTGGAG	2 cut(s)	528, 707
Bpu10I	CCTNAGC	1 cut(s)	698
Bpu1102I	GCTNAGC	1 cut(s)	171
Bpu14I	TTCGAA	1 cut(s)	878
BpuEI	CTTGAG	1 cut(s)	264
BpuMI	CCSGG	2 cut(s)	562, 871
BsaAI	YACGTR	1 cut(s)	631
BsaJI	CCNNGG	4 cut(s)	124, 176, 325, 870
BsaWI	WCCGGW	3 cut(s)	778, 953, 958
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 291, 953
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	2 cut(s)	259, 623
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	4 cut(s)	124, 176, 325, 870
BseGI	GGATG	2 cut(s)	70, 705
BseLI	CCNNNNNNNGG	3 cut(s)	112, 291, 953
BseMII	CTCAG	2 cut(s)	162, 251
BseNI	ACTGG	2 cut(s)	259, 623
BseSI	GKGCMC	1 cut(s)	636
BshFI	GGCC	1 cut(s)	390
BsiHKAI	GWGCWC	1 cut(s)	382
BsiSI	CCGG	6 cut(s)	285, 561, 779, 870, 954, 959
BslI	CCNNNNNNNGG	3 cut(s)	112, 291, 953
BsnI	GGCC	1 cut(s)	390
Bsp119I	TTCGAA	1 cut(s)	878
Bsp1286I	GDGCHC	2 cut(s)	382, 636
Bsp143I	GATC	5 cut(s)	318, 480, 519, 925, 964
Bsp1720I	GCTNAGC	1 cut(s)	171
Bsp19I	CCATGG	1 cut(s)	176
BspACI	CCGC	1 cut(s)	462
BspANI	GGCC	1 cut(s)	390
BspCNI	CTCAG	2 cut(s)	163, 252
BspLI	GGNNCC	1 cut(s)	559
BspMAI	CTGCAG	1 cut(s)	488
BspPI	GGATC	1 cut(s)	514
BspQI	GCTCTTC	1 cut(s)	370
BspT104I	TTCGAA	1 cut(s)	878
BsrFI	RCCGGY	1 cut(s)	284
BsrI	ACTGG	2 cut(s)	259, 623
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	4 cut(s)	124, 176, 325, 870
BssMI	GATC	5 cut(s)	318, 480, 519, 925, 964
BssT1I	CCWWGG	2 cut(s)	124, 176
Bst2UI	CCWGG	1 cut(s)	57
Bst6I	CTCTTC	2 cut(s)	370, 955
BstBAI	YACGTR	1 cut(s)	631
BstBI	TTCGAA	1 cut(s)	878
BstDEI	CTNAG	4 cut(s)	171, 260, 465, 698
BstDSI	CCRYGG	1 cut(s)	176
BstF5I	GGATG	2 cut(s)	70, 705
BstKTI	GATC	5 cut(s)	321, 483, 522, 928, 967
BstMBI	GATC	5 cut(s)	318, 480, 519, 925, 964
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	3 cut(s)	55, 560, 869
BstSFI	CTRYAG	2 cut(s)	367, 484
BstSLI	GKGCMC	1 cut(s)	636
BstX2I	RGATCY	2 cut(s)	318, 519
BstYI	RGATCY	2 cut(s)	318, 519
BsuI	GTATCC	1 cut(s)	258
BsuRI	GGCC	1 cut(s)	390
BtgI	CCRYGG	1 cut(s)	176
BtgZI	GCGATG	1 cut(s)	827
BtsCI	GGATG	2 cut(s)	70, 705
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	1 cut(s)	956
CpoI	CGGWCCG	1 cut(s)	956
Csp6I	GTAC	1 cut(s)	220
CspI	CGGWCCG	1 cut(s)	956
CviAII	CATG	2 cut(s)	177, 413
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	4 cut(s)	171, 260, 465, 698
DpnI	GATC	5 cut(s)	320, 482, 521, 927, 966
DpnII	GATC	5 cut(s)	318, 480, 519, 925, 964
Eam1104I	CTCTTC	2 cut(s)	370, 955
EarI	CTCTTC	2 cut(s)	370, 955
Ecl136II	GAGCTC	1 cut(s)	380
Eco130I	CCWWGG	2 cut(s)	124, 176
Eco24I	GRGCYC	1 cut(s)	382
Eco47I	GGWCC	1 cut(s)	956
Eco53kI	GAGCTC	1 cut(s)	380
Eco57I	CTGAAG	1 cut(s)	667
EcoICRI	GAGCTC	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	2 cut(s)	124, 176
EcoT22I	ATGCAT	1 cut(s)	414
EcoT38I	GRGCYC	1 cut(s)	382
ErhI	CCWWGG	2 cut(s)	124, 176
FaeI	CATG	2 cut(s)	180, 416
FaiI	YATR	9 cut(s)	92, 178, 190, 192, 347, 414, 420, 498, 598
FatI	CATG	2 cut(s)	176, 412
FbaI	TGATCA	1 cut(s)	925
FokI	GGATG	2 cut(s)	57, 692
FriOI	GRGCYC	1 cut(s)	382
FspBI	CTAG	3 cut(s)	425, 567, 660
GsuI	CTGGAG	2 cut(s)	528, 707
HaeIII	GGCC	1 cut(s)	390
HapII	CCGG	6 cut(s)	285, 561, 779, 870, 954, 959
Hin1II	CATG	2 cut(s)	180, 416
HinfI	GANTC	3 cut(s)	543, 587, 730
HpaII	CCGG	6 cut(s)	285, 561, 779, 870, 954, 959
HphI	GGTGA	5 cut(s)	161, 218, 418, 490, 585
Hpy166II	GTNNAC	2 cut(s)	572, 628
Hpy188I	TCNGA	5 cut(s)	252, 261, 326, 542, 766
Hpy188III	TCNNGA	6 cut(s)	119, 523, 724, 932, 968, 979
Hpy8I	GTNNAC	2 cut(s)	572, 628
Hpy99I	CGWCG	1 cut(s)	535
HpyAV	CCTTC	5 cut(s)	106, 289, 301, 702, 825
HpyCH4IV	ACGT	2 cut(s)	533, 630
HpyCH4V	TGCA	2 cut(s)	412, 486
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	4 cut(s)	171, 260, 465, 698
HpySE526I	ACGT	2 cut(s)	533, 630
Hsp92II	CATG	2 cut(s)	180, 416
Ksp22I	TGATCA	1 cut(s)	925
Kzo9I	GATC	5 cut(s)	318, 480, 519, 925, 964
LguI	GCTCTTC	1 cut(s)	370
LmnI	GCTCC	2 cut(s)	385, 707
LweI	GCATC	2 cut(s)	399, 864
MaeI	CTAG	3 cut(s)	425, 567, 660
MaeII	ACGT	2 cut(s)	533, 630
MalI	GATC	5 cut(s)	320, 482, 521, 927, 966
MboI	GATC	5 cut(s)	318, 480, 519, 925, 964
MboII	GAAGA	8 cut(s)	41, 95, 313, 361, 387, 529, 582, 942
MfeI	CAATTG	1 cut(s)	676
MflI	RGATCY	2 cut(s)	318, 519
MhlI	GDGCHC	2 cut(s)	382, 636
MluCI	AATT	5 cut(s)	201, 400, 676, 905, 982
MmeI	TCCRAC	4 cut(s)	98, 275, 669, 733
Mph1103I	ATGCAT	1 cut(s)	414
MroXI	GAANNNNTTC	1 cut(s)	547
MseI	TTAA	2 cut(s)	536, 581
MspI	CCGG	6 cut(s)	285, 561, 779, 870, 954, 959
MspR9I	CCNGG	3 cut(s)	57, 562, 871
MunI	CAATTG	1 cut(s)	676
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	281
NciI	CCSGG	2 cut(s)	562, 871
NcoI	CCATGG	1 cut(s)	176
NdeII	GATC	5 cut(s)	318, 480, 519, 925, 964
NlaIII	CATG	2 cut(s)	180, 416
NlaIV	GGNNCC	1 cut(s)	559
NmeAIII	GCCGAG	1 cut(s)	113
NsiI	ATGCAT	1 cut(s)	414
NspV	TTCGAA	1 cut(s)	878
PciSI	GCTCTTC	1 cut(s)	370
PdmI	GAANNNNTTC	1 cut(s)	547
PfeI	GAWTC	3 cut(s)	543, 587, 730
Ppu21I	YACGTR	1 cut(s)	631
Psp124BI	GAGCTC	1 cut(s)	382
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	559
PspPI	GGNCC	1 cut(s)	956
PstI	CTGCAG	1 cut(s)	488
PsuI	RGATCY	2 cut(s)	318, 519
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
Rsr2I	CGGWCCG	1 cut(s)	956
RsrII	CGGWCCG	1 cut(s)	956
SacI	GAGCTC	1 cut(s)	382
SapI	GCTCTTC	1 cut(s)	370
SaqAI	TTAA	2 cut(s)	536, 581
Sau3AI	GATC	5 cut(s)	318, 480, 519, 925, 964
Sau96I	GGNCC	1 cut(s)	956
ScrFI	CCNGG	3 cut(s)	57, 562, 871
SduI	GDGCHC	2 cut(s)	382, 636
SfaNI	GCATC	2 cut(s)	399, 864
SfcI	CTRYAG	2 cut(s)	367, 484
SfuI	TTCGAA	1 cut(s)	878
SinI	GGWCC	1 cut(s)	956
SmlI	CTYRAG	1 cut(s)	279
SmoI	CTYRAG	1 cut(s)	279
Sse9I	AATT	5 cut(s)	201, 400, 676, 905, 982
SsiI	CCGC	1 cut(s)	462
SspMI	CTAG	3 cut(s)	425, 567, 660
SstI	GAGCTC	1 cut(s)	382
StyD4I	CCNGG	3 cut(s)	55, 560, 869
StyI	CCWWGG	2 cut(s)	124, 176
TaiI	ACGT	2 cut(s)	536, 633
TaqI	TCGA	2 cut(s)	530, 878
TaqII	GACCGA	1 cut(s)	632
TasI	AATT	5 cut(s)	201, 400, 676, 905, 982
TfiI	GAWTC	3 cut(s)	543, 587, 730
Tru1I	TTAA	2 cut(s)	536, 581
Tru9I	TTAA	2 cut(s)	536, 581
TspDTI	ATGAA	4 cut(s)	59, 362, 485, 486
TspGWI	ACGGA	1 cut(s)	570
VpaK11BI	GGWCC	1 cut(s)	956
XapI	RAATTY	1 cut(s)	905
XmnI	GAANNNNTTC	1 cut(s)	547
XspI	CTAG	3 cut(s)	425, 567, 660
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.