Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0008227

Physical Location & Seq

Genomic Coordinates Forward (+)

3110051 .. 3112730

Gene Structure 2680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG046400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGGAGAGAAGGAATGGTACTTTTTCTGTGTGAGGGATAGAAAGTATCCGACTGGTCTGAGGACAAACAGAGCAACTGAAGCTGGATACTGGAAAGCTACTGGGAAAGACAAGGAGATTTACAAAGGGAAATCCTTGGTTGGCATGAAGAAGACCCTTGTTTTCTACGGGGGCAGAGCCCCAAAAGGTGAAAAAAGCAACTGGGTTATGCATGAATACAGACTGGAGGGTAAATTCTCAGTCCACAACCTCCCCAAATCTGCGAGGAACGAATGGGTGATTTGTAGGGTCTTTGAAAAATCTGCTGGTGGTAAAAAAATCCATATTACTGGACTTGTGAATTCCGGTCCTCATGGAACTGAAATGGGTTCTTCTGGTTTACCACCTTTGTTGGACTCAGCGCCTTACAATGGCGCCAAGACCAGACCTGCTTCAGAGTCGAATTACGTGCCCTGCTTCTCCAACCATGAGTCCATTGATTCTCAAAGAAATCAAGGGATTGTTGATTACATCAACAGCAATCCTCTTTTCTCTGTTTCTTCGAATCCTTTAAACAACAACAACGCTTTCCCACGAGTCACGTATCAGAATTCACTCTGCTCTGCTCCCGTTTCATCTGCGAATTTCCAGTTTCCGAGTTCGGTTTTAATGCAAGACCATCTGAGGGCCTTGCTTGAAAACAATGTCTCATTCATGAGGCAGAACTTCAAAACAGAGAGGGACATGATCAGTGTGTCTCAAGAAACAGGTCTTACTACTGATGTGAACCCTGAAATCTCTTCTGTCATGCCAAATCCTGAGATGGGTAGGAGGCCATTTGATGATCAAGATAACTTTTGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

281

Amino Acids

31.66

Weight (kDa)

9.06

Isoelectric Point (pI)

34.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	2 - 75	1.8e-26	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07680 AT5G07680 AT5G61430 AT5G61430
fragaria_vesca	FvH4_5g14670 FvH4_5g14670
malus_domestica	MD06G1196100.v1.1 MD14G1203000.v1.1
prunus_persica	Prupe.5G196000_v2.0.a1
pyrus_communis	pycom06g17320 pycom14g16800
rosa_chinensis	RchiOBHm_Chr7g0181751 RchiOBHm_Chr7g0181811
rosa_laevigata	RLG00000005172
rosa_multiflora	Rmu_sc0000988.1_g000005 Rmu_sc0004898.1_g000004
rosa_roxburghii	Rroxscaffold_3G00271760
rosa_rugosa	Rorug06G0443200
rosa_samantha	Rh7AG045700 Rh7BG045000 Rh7CG046400 Rh7DG045300
rosa_wichuraiana	Rw7G003810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	436
AccB1I	GGYRCC	1 cut(s)	413
AcsI	RAATTY	4 cut(s)	233, 340, 589, 622
AcuI	CTGAAG	2 cut(s)	99, 417
AcyI	GRCGYC	1 cut(s)	414
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	3 cut(s)	410, 664, 803
AgsI	TTSAA	3 cut(s)	296, 677, 709
AluBI	AGCT	2 cut(s)	83, 98
AluI	AGCT	2 cut(s)	83, 98
Alw26I	GTCTC	2 cut(s)	691, 741
AoxI	GGCC	2 cut(s)	666, 812
ApoI	RAATTY	4 cut(s)	233, 340, 589, 622
AspLEI	GCGC	2 cut(s)	403, 416
AspS9I	GGNCC	2 cut(s)	347, 666
AsuHPI	GGTGA	2 cut(s)	200, 289
AsuII	TTCGAA	1 cut(s)	542
AvaII	GGWCC	1 cut(s)	347
BaeGI	GKGCMC	1 cut(s)	453
BanI	GGYRCC	1 cut(s)	413
BanII	GRGCYC	1 cut(s)	181
BarI	GAAGNNNNNNTAC	1 cut(s)	34
BauI	CACGAG	1 cut(s)	573
BbsI	GAAGAC	1 cut(s)	158
BccI	CCATC	2 cut(s)	666, 796
BcgI	CGANNNNNNTGC	2 cut(s)	430, 464
BciVI	GTATCC	2 cut(s)	57, 80
BclI	TGATCA	2 cut(s)	726, 823
BcoDI	GTCTC	2 cut(s)	691, 741
BfoI	RGCGCY	2 cut(s)	404, 417
BfuAI	ACCTGC	1 cut(s)	436
BfuI	GTATCC	2 cut(s)	57, 80
Bme18I	GGWCC	1 cut(s)	347
BmgT120I	GGNCC	2 cut(s)	347, 666
BmiI	GGNNCC	1 cut(s)	415
BmrI	ACTGGG	2 cut(s)	111, 211
BmuI	ACTGGG	2 cut(s)	111, 211
BpiI	GAAGAC	1 cut(s)	158
BpmI	CTGGAG	1 cut(s)	245
Bpu14I	TTCGAA	1 cut(s)	542
BpuEI	CTTGAG	1 cut(s)	723
BsaAI	YACGTR	2 cut(s)	448, 582
BsaHI	GRCGYC	1 cut(s)	414
BsaJI	CCNNGG	1 cut(s)	135
BsaWI	WCCGGW	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	3 cut(s)	410, 664, 803
Bse1I	ACTGG	7 cut(s)	58, 95, 106, 206, 228, 334, 628
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	1 cut(s)	846
BseLI	CCNNNNNNNGG	3 cut(s)	410, 664, 803
BseMII	CTCAG	5 cut(s)	50, 252, 411, 653, 789
BseNI	ACTGG	7 cut(s)	58, 95, 106, 206, 228, 334, 628
BseSI	GKGCMC	1 cut(s)	453
BshFI	GGCC	2 cut(s)	668, 814
BshNI	GGYRCC	1 cut(s)	413
BsiSI	CCGG	1 cut(s)	345
BslFI	GGGAC	1 cut(s)	734
BslI	CCNNNNNNNGG	3 cut(s)	410, 664, 803
BsmAI	GTCTC	2 cut(s)	691, 741
BsmFI	GGGAC	1 cut(s)	734
BsnI	GGCC	2 cut(s)	668, 814
Bsp119I	TTCGAA	1 cut(s)	542
Bsp1286I	GDGCHC	2 cut(s)	181, 453
Bsp143I	GATC	2 cut(s)	726, 823
BspANI	GGCC	2 cut(s)	668, 814
BspCNI	CTCAG	5 cut(s)	51, 251, 410, 654, 790
BspHI	TCATGA	1 cut(s)	693
BspLI	GGNNCC	1 cut(s)	415
BspMI	ACCTGC	1 cut(s)	436
BspT104I	TTCGAA	1 cut(s)	542
BspT107I	GGYRCC	1 cut(s)	413
BsrI	ACTGG	7 cut(s)	58, 95, 106, 206, 228, 334, 628
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	2 cut(s)	726, 823
BssNI	GRCGYC	1 cut(s)	414
BssSI	CACGAG	1 cut(s)	573
BssT1I	CCWWGG	1 cut(s)	135
Bst2BI	CACGAG	1 cut(s)	573
Bst6I	CTCTTC	1 cut(s)	784
BstACI	GRCGYC	1 cut(s)	414
BstBAI	YACGTR	2 cut(s)	448, 582
BstBI	TTCGAA	1 cut(s)	542
BstDEI	CTNAG	5 cut(s)	59, 238, 397, 662, 798
BstF5I	GGATG	1 cut(s)	846
BstH2I	RGCGCY	2 cut(s)	404, 417
BstHHI	GCGC	2 cut(s)	403, 416
BstKTI	GATC	2 cut(s)	729, 826
BstMAI	GTCTC	2 cut(s)	691, 741
BstMBI	GATC	2 cut(s)	726, 823
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstSLI	GKGCMC	1 cut(s)	453
BstV2I	GAAGAC	1 cut(s)	158
BstXI	CCANNNNNNTGG	1 cut(s)	329
BsuI	GTATCC	2 cut(s)	57, 80
BsuRI	GGCC	2 cut(s)	668, 814
BtsCI	GGATG	1 cut(s)	846
BtsIMutI	CAGTG	1 cut(s)	736
BveI	ACCTGC	1 cut(s)	436
CciI	TCATGA	1 cut(s)	693
CfoI	GCGC	2 cut(s)	403, 416
Cfr13I	GGNCC	2 cut(s)	347, 666
Csp6I	GTAC	1 cut(s)	19
CspCI	CAANNNNNGTGG	2 cut(s)	372, 407
CviAII	CATG	7 cut(s)	145, 212, 353, 467, 694, 724, 787
CviJI	RGCY	5 cut(s)	83, 98, 179, 668, 814
CviKI_1	RGCY	5 cut(s)	83, 98, 179, 668, 814
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	5 cut(s)	59, 238, 397, 662, 798
DinI	GGCGCC	1 cut(s)	415
DpnI	GATC	2 cut(s)	728, 825
DpnII	GATC	2 cut(s)	726, 823
DraI	TTTAAA	1 cut(s)	552
Eam1104I	CTCTTC	1 cut(s)	784
EarI	CTCTTC	1 cut(s)	784
Eco130I	CCWWGG	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	347
Eco57I	CTGAAG	2 cut(s)	99, 417
EcoO109I	RGGNCCY	1 cut(s)	666
EcoRI	GAATTC	2 cut(s)	340, 589
EcoT14I	CCWWGG	1 cut(s)	135
EcoT22I	ATGCAT	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	181
EgeI	GGCGCC	1 cut(s)	415
EheI	GGCGCC	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	7 cut(s)	148, 215, 356, 470, 697, 727, 790
FaiI	YATR	9 cut(s)	146, 209, 213, 324, 354, 468, 695, 725, 788
FaqI	GGGAC	1 cut(s)	734
FatI	CATG	7 cut(s)	144, 211, 352, 466, 693, 723, 786
FbaI	TGATCA	2 cut(s)	726, 823
FriOI	GRGCYC	1 cut(s)	181
GlaI	GCGC	2 cut(s)	402, 415
GsuI	CTGGAG	1 cut(s)	245
HaeII	RGCGCY	2 cut(s)	404, 417
HaeIII	GGCC	2 cut(s)	668, 814
HapII	CCGG	1 cut(s)	345
HhaI	GCGC	2 cut(s)	403, 416
Hin1I	GRCGYC	1 cut(s)	414
Hin1II	CATG	7 cut(s)	148, 215, 356, 470, 697, 727, 790
Hin6I	GCGC	2 cut(s)	401, 414
HinP1I	GCGC	2 cut(s)	401, 414
HinfI	GANTC	6 cut(s)	395, 437, 470, 479, 544, 576
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	2 cut(s)	200, 289
Hpy166II	GTNNAC	3 cut(s)	244, 380, 766
Hpy188I	TCNGA	6 cut(s)	51, 60, 436, 588, 636, 663
Hpy188III	TCNNGA	4 cut(s)	694, 740, 797, 827
Hpy8I	GTNNAC	3 cut(s)	244, 380, 766
HpyAV	CCTTC	1 cut(s)	4
HpyCH4IV	ACGT	2 cut(s)	447, 581
HpyCH4V	TGCA	2 cut(s)	211, 652
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	5 cut(s)	59, 238, 397, 662, 798
HpySE526I	ACGT	2 cut(s)	447, 581
Hsp92I	GRCGYC	1 cut(s)	414
Hsp92II	CATG	7 cut(s)	148, 215, 356, 470, 697, 727, 790
HspAI	GCGC	2 cut(s)	401, 414
KasI	GGCGCC	1 cut(s)	413
Ksp22I	TGATCA	2 cut(s)	726, 823
Kzo9I	GATC	2 cut(s)	726, 823
LmnI	GCTCC	1 cut(s)	610
MaeII	ACGT	2 cut(s)	447, 581
MaeIII	GTNAC	1 cut(s)	577
MalI	GATC	2 cut(s)	728, 825
MboI	GATC	2 cut(s)	726, 823
MboII	GAAGA	5 cut(s)	160, 163, 363, 531, 771
MhlI	GDGCHC	2 cut(s)	181, 453
MluCI	AATT	5 cut(s)	233, 340, 442, 589, 622
Mly113I	GGCGCC	1 cut(s)	414
MlyI	GAGTC	4 cut(s)	389, 446, 479, 585
MmeI	TCCRAC	3 cut(s)	74, 372, 486
Mph1103I	ATGCAT	1 cut(s)	213
MseI	TTAA	2 cut(s)	551, 647
MspI	CCGG	1 cut(s)	345
MwoI	GCNNNNNNNGC	1 cut(s)	80
NarI	GGCGCC	1 cut(s)	414
NdeII	GATC	2 cut(s)	726, 823
NlaIII	CATG	7 cut(s)	148, 215, 356, 470, 697, 727, 790
NlaIV	GGNNCC	1 cut(s)	415
NmuCI	GTSAC	1 cut(s)	577
NsiI	ATGCAT	1 cut(s)	213
NspV	TTCGAA	1 cut(s)	542
PagI	TCATGA	1 cut(s)	693
PfeI	GAWTC	2 cut(s)	479, 544
PleI	GAGTC	4 cut(s)	389, 445, 478, 584
PluTI	GGCGCC	1 cut(s)	417
PpsI	GAGTC	4 cut(s)	389, 445, 478, 584
Ppu21I	YACGTR	2 cut(s)	448, 582
PspN4I	GGNNCC	1 cut(s)	415
PspPI	GGNCC	2 cut(s)	347, 666
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SaqAI	TTAA	2 cut(s)	551, 647
Sau3AI	GATC	2 cut(s)	726, 823
Sau96I	GGNCC	2 cut(s)	347, 666
SchI	GAGTC	4 cut(s)	389, 446, 479, 585
SduI	GDGCHC	2 cut(s)	181, 453
SetI	ASST	9 cut(s)	85, 100, 190, 252, 388, 430, 450, 584, 751
SfoI	GGCGCC	1 cut(s)	415
SfuI	TTCGAA	1 cut(s)	542
SinI	GGWCC	1 cut(s)	347
SmlI	CTYRAG	1 cut(s)	738
SmoI	CTYRAG	1 cut(s)	738
Sse9I	AATT	5 cut(s)	233, 340, 442, 589, 622
SspDI	GGCGCC	1 cut(s)	413
StyI	CCWWGG	1 cut(s)	135
TaiI	ACGT	2 cut(s)	450, 584
TaqI	TCGA	2 cut(s)	440, 542
TasI	AATT	5 cut(s)	233, 340, 442, 589, 622
TfiI	GAWTC	2 cut(s)	479, 544
Tru1I	TTAA	2 cut(s)	551, 647
Tru9I	TTAA	2 cut(s)	551, 647
TscAI	CASTG	1 cut(s)	736
TseFI	GTSAC	1 cut(s)	577
Tsp45I	GTSAC	1 cut(s)	577
TspDTI	ATGAA	4 cut(s)	161, 228, 603, 682
TspRI	CASTG	1 cut(s)	736
VpaK11BI	GGWCC	1 cut(s)	347
XapI	RAATTY	4 cut(s)	233, 340, 589, 622
Zsp2I	ATGCAT	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.