Rh7BG045000
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0008227
Physical Location & Seq
Forward (+)
2814171 .. 2867871
53701 bp
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UTR
Exon/CDS
Intron
Rh7BG045000.1

Sequence Viewer

Length: 582 bp
ATGATGCAAGAAATGGAGAAGTTTGCTATTCAAGCTGGAACTTTCAAGGAAGATGATCAGATTGATTTGCCACCGGGGTTTCGATTCCATCCAACCGATGAAGAGCTTATTTCTCACTACCTGCACAAGAAGGTTATCGATTCCAACTTCGGCTGCAAAGCAATTGGTGATGTGGACTTGAACAAGTCTGAGCCTTGGGATTTGCCATATAAGGCGAAAATGGGAGAGAAGGAATGGTACTTTTTCTGTGTGAGGGATAGAAAGTATCCGACTGGTCTGAGGACAAACAGAGCAACTGAAGCTGGATATTGGAAAGCTACTGGGAAAGACAAGGAGATTTACAAAGGGAAATCCTTGGTTGGCATGAAGAAGACCCTTGTTTTCTACAGGGGAAGAGCCCCAAAAGGTGAAAAGAGCAACTGGGTCATGCATGAATACAGACTGGAGGGTAAATTCTCAGTCCACAACCTCCCCAAATCTGCAAAGAACGAATGGGTGATTTGTAGGGTCTTTGAAAAATCTGCTGGTGGTAAAAAAAATCCATATCACTGGACTTGTGAATTCGGGTTCTCATGGAACTGA

Protein Analysis

193

Amino Acids

22.61

Weight (kDa)

9.19

Isoelectric Point (pI)

22.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 24 - 148 1.9e-50 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 129
AcsI RAATTY 2 cut(s) 452, 560
AcuI CTGAAG 1 cut(s) 318
AfaI GTAC 1 cut(s) 239
AgsI TTSAA 4 cut(s) 32, 46, 181, 515
AluBI AGCT 4 cut(s) 35, 106, 302, 317
AluI AGCT 4 cut(s) 35, 106, 302, 317
ApeKI GCWGC 1 cut(s) 153
ApoI RAATTY 2 cut(s) 452, 560
AsuC2I CCSGG 1 cut(s) 75
AsuHPI GGTGA 3 cut(s) 179, 419, 508
BanII GRGCYC 1 cut(s) 400
BarI GAAGNNNNNNTAC 2 cut(s) 221, 253
BbsI GAAGAC 1 cut(s) 377
BbvI GCAGC 1 cut(s) 140
BccI CCATC 1 cut(s) 96
BciVI GTATCC 1 cut(s) 276
BclI TGATCA 1 cut(s) 55
BcnI CCSGG 1 cut(s) 75
BfmI CTRYAG 1 cut(s) 385
BfuAI ACCTGC 1 cut(s) 129
BfuI GTATCC 1 cut(s) 276
BisI GCNGC 1 cut(s) 154
BlsI GCNGC 1 cut(s) 155
Bme1390I CCNGG 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 75
BmrI ACTGGG 2 cut(s) 330, 430
BmuI ACTGGG 2 cut(s) 330, 430
BpiI GAAGAC 1 cut(s) 377
BpmI CTGGAG 1 cut(s) 464
BpuMI CCSGG 1 cut(s) 75
Bsa29I ATCGAT 1 cut(s) 138
BsaJI CCNNGG 3 cut(s) 74, 194, 354
Bse1I ACTGG 5 cut(s) 277, 325, 425, 447, 554
BseCI ATCGAT 1 cut(s) 138
BseDI CCNNGG 3 cut(s) 74, 194, 354
BseGI GGATG 1 cut(s) 88
BseMII CTCAG 3 cut(s) 180, 269, 471
BseNI ACTGG 5 cut(s) 277, 325, 425, 447, 554
BseXI GCAGC 1 cut(s) 140
BsgI GTGCAG 1 cut(s) 107
BshVI ATCGAT 1 cut(s) 138
BsiSI CCGG 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 400
Bsp143I GATC 1 cut(s) 55
BspCNI CTCAG 3 cut(s) 181, 270, 470
BspDI ATCGAT 1 cut(s) 138
BspMI ACCTGC 1 cut(s) 129
BspQI GCTCTTC 2 cut(s) 96, 388
BsrI ACTGG 5 cut(s) 277, 325, 425, 447, 554
BssECI CCNNGG 3 cut(s) 74, 194, 354
BssMI GATC 1 cut(s) 55
BssT1I CCWWGG 2 cut(s) 194, 354
Bst6I CTCTTC 2 cut(s) 96, 388
BstDEI CTNAG 3 cut(s) 189, 278, 457
BstF5I GGATG 1 cut(s) 88
BstKTI GATC 1 cut(s) 58
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 2 cut(s) 32, 299
BstSCI CCNGG 1 cut(s) 73
BstSFI CTRYAG 1 cut(s) 385
BstV1I GCAGC 1 cut(s) 140
BstV2I GAAGAC 1 cut(s) 377
BstXI CCANNNNNNTGG 1 cut(s) 549
Bsu15I ATCGAT 1 cut(s) 138
BsuI GTATCC 1 cut(s) 276
BsuTUI ATCGAT 1 cut(s) 138
BtsCI GGATG 1 cut(s) 88
BtsIMutI CAGTG 1 cut(s) 547
BveI ACCTGC 1 cut(s) 129
ClaI ATCGAT 1 cut(s) 138
Csp6I GTAC 1 cut(s) 238
CviAII CATG 4 cut(s) 364, 427, 431, 573
CviJI RGCY 7 cut(s) 35, 106, 153, 193, 302, 317, 398
CviKI_1 RGCY 7 cut(s) 35, 106, 153, 193, 302, 317, 398
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 3 cut(s) 189, 278, 457
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eam1104I CTCTTC 2 cut(s) 96, 388
EarI CTCTTC 2 cut(s) 96, 388
Eco130I CCWWGG 2 cut(s) 194, 354
Eco24I GRGCYC 1 cut(s) 400
Eco57I CTGAAG 1 cut(s) 318
EcoRI GAATTC 1 cut(s) 560
EcoT14I CCWWGG 2 cut(s) 194, 354
EcoT22I ATGCAT 1 cut(s) 432
EcoT38I GRGCYC 1 cut(s) 400
ErhI CCWWGG 2 cut(s) 194, 354
FaeI CATG 4 cut(s) 367, 430, 434, 576
FaiI YATR 7 cut(s) 208, 210, 365, 428, 432, 544, 574
FatI CATG 4 cut(s) 363, 426, 430, 572
FbaI TGATCA 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 154
FokI GGATG 1 cut(s) 75
FriOI GRGCYC 1 cut(s) 400
Fsp4HI GCNGC 1 cut(s) 154
GluI GCNGC 1 cut(s) 154
GsuI CTGGAG 1 cut(s) 464
HapII CCGG 1 cut(s) 74
Hin1II CATG 4 cut(s) 367, 430, 434, 576
HinfI GANTC 2 cut(s) 84, 140
HpaII CCGG 1 cut(s) 74
HphI GGTGA 3 cut(s) 179, 419, 508
Hpy166II GTNNAC 2 cut(s) 175, 463
Hpy188I TCNGA 4 cut(s) 60, 190, 270, 279
Hpy8I GTNNAC 2 cut(s) 175, 463
HpyAV CCTTC 2 cut(s) 124, 223
HpyCH4V TGCA 5 cut(s) 7, 124, 156, 430, 482
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 299
HpyF3I CTNAG 3 cut(s) 189, 278, 457
Hsp92II CATG 4 cut(s) 367, 430, 434, 576
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 1 cut(s) 55
LguI GCTCTTC 2 cut(s) 96, 388
Lsp1109I GCAGC 1 cut(s) 140
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 5 cut(s) 62, 113, 379, 382, 405
MfeI CAATTG 1 cut(s) 162
MhlI GDGCHC 1 cut(s) 400
MluCI AATT 3 cut(s) 162, 452, 560
MmeI TCCRAC 3 cut(s) 116, 168, 293
MnlI CCTC 4 cut(s) 246, 273, 439, 479
Mph1103I ATGCAT 1 cut(s) 432
MspI CCGG 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 75
MunI CAATTG 1 cut(s) 162
MwoI GCNNNNNNNGC 2 cut(s) 32, 299
NciI CCSGG 1 cut(s) 75
NdeII GATC 1 cut(s) 55
NlaIII CATG 4 cut(s) 367, 430, 434, 576
NsiI ATGCAT 1 cut(s) 432
PciSI GCTCTTC 2 cut(s) 96, 388
PfeI GAWTC 2 cut(s) 84, 140
PkrI GCNGC 1 cut(s) 155
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
SapI GCTCTTC 2 cut(s) 96, 388
SatI GCNGC 1 cut(s) 154
Sau3AI GATC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 75
SduI GDGCHC 1 cut(s) 400
SetI ASST 8 cut(s) 37, 108, 123, 135, 304, 319, 409, 471
SfcI CTRYAG 1 cut(s) 385
Sse9I AATT 3 cut(s) 162, 452, 560
StyD4I CCNGG 1 cut(s) 73
StyI CCWWGG 2 cut(s) 194, 354
TaqI TCGA 2 cut(s) 82, 138
TasI AATT 3 cut(s) 162, 452, 560
TfiI GAWTC 2 cut(s) 84, 140
TscAI CASTG 1 cut(s) 554
TseI GCWGC 1 cut(s) 153
TspDTI ATGAA 3 cut(s) 114, 380, 447
TspRI CASTG 1 cut(s) 554
XapI RAATTY 2 cut(s) 452, 560
Zsp2I ATGCAT 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.