Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0008227

Physical Location & Seq

Genomic Coordinates Forward (+)

15882585 .. 15884747

Gene Structure 2163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G196000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGAACACGTTCCAGCTGGAATGGTCGAGCAATATGAGCAGATCGATTTGCCACCGGGGTTTCGGTTCCACCCAACCGATGAAGAGCTTATTTCTCACTACCTTCATAAGAAGGTTATTGATATCAGCTTCTCTTGTAAAGCAATTGGGGAGGTGGACTTGAACAAGTCTGAACCTTGGGATTTGCCTGGGAAAGCGAAAATGGGAGAAAAGGAATGGTACTTTTTCTGTGTGAGAGACAGAAAGTACCCAACTGGTCTGAGGACAAACAGGGCAACTGAAGCTGGATATTGGAAAGCCACGGGGAAAGATAAAGAGATCTACAAAGGAAAATCCCTAGTTGGCATGAAAAAGACCTTGGTTTTCTACAGAGGCAGAGCCCCCAAAGGAGAAAAGAGCAATTGGGTCATGCATGAGTACAGATTGGAGGGTAAATTCTCTGTTCATAACCTCCCCAAAACTGCAAAGAATGAATGGGTGATTTGCAGGGTTTTTGAGAAAAACTCTGGTGGCAAAAAAACCCATATTTCAGGATTTGTGAGATATGGTGCTCTGGGAAATGAAATGGATCCTTCTGGTCTGCCACCGTTAATGGATTCTTCACCTTACAGCTCCAAAACCAAACTCGCCTCTGAGTCCTCTTACGTGCCCTGCTTCTCCAACCCTGATCCCACTGATGTTCAAAGAAACCAAGGGATTGTTGATTATATGAACAACCCTCTTTTTGGTGTTTCTTCAAACACCTCCAACTTTTTCCCAAGAGCCCCATTTTCCACCTCATTCTACTCTGCTCAGTCTGCTCCAGTTGCAGCAAATTTCCAGTTCCCAGGTTCAGTTTTAATGCAAGACCAGTCCATTCTGAGGGCCTTGCTTGAAAACAATGGTTCAAACATGAGGCAGAGCTTCAAAACAGAGAGGGAAATGGTCAGTGTGTCCCAAGAGACGGGGCTAACAAGTGAAATGAACACTGAAATCTCTTCTGTCATGTCCAATCTTGAGATGGGAAGGAGGCCATTTGGTGATCAAGAGGCCCCAGCAGCAGCAGCTGGAGCAGTGGACCTGGATAATTTTTGGAATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

361

Amino Acids

40.48

Weight (kDa)

7.65

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07680 AT5G07680 AT5G61430 AT5G61430
fragaria_vesca	FvH4_5g14670 FvH4_5g14670
malus_domestica	MD06G1196100.v1.1 MD14G1203000.v1.1
prunus_persica	Prupe.5G196000_v2.0.a1
pyrus_communis	pycom06g17320 pycom14g16800
rosa_chinensis	RchiOBHm_Chr7g0181751 RchiOBHm_Chr7g0181811
rosa_laevigata	RLG00000005172
rosa_multiflora	Rmu_sc0000988.1_g000005 Rmu_sc0004898.1_g000004
rosa_roxburghii	Rroxscaffold_3G00271760
rosa_rugosa	Rorug06G0443200
rosa_samantha	Rh7AG045700 Rh7BG045000 Rh7CG046400 Rh7DG045300
rosa_wichuraiana	Rw7G003810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	563, 576, 662
AcsI	RAATTY	2 cut(s)	434, 814
AcuI	CTGAAG	1 cut(s)	300
AfaI	GTAC	3 cut(s)	221, 248, 419
AfiI	CCNNNNNNNGG	3 cut(s)	725, 861, 943
AflIII	ACRYGT	1 cut(s)	7
AgsI	TTSAA	6 cut(s)	163, 683, 738, 875, 888, 907
AjnI	CCWGG	3 cut(s)	187, 826, 1059
AjuI	GAANNNNNNNTTGG	2 cut(s)	341, 373
AluBI	AGCT	7 cut(s)	17, 88, 129, 284, 612, 903, 1046
AluI	AGCT	7 cut(s)	17, 88, 129, 284, 612, 903, 1046
Alw21I	GWGCWC	1 cut(s)	553
Alw26I	GTCTC	2 cut(s)	231, 935
AlwI	GGATC	3 cut(s)	563, 576, 662
AlwNI	CAGNNNCTG	1 cut(s)	1046
AoxI	GGCC	3 cut(s)	864, 1010, 1029
ApeKI	GCWGC	4 cut(s)	809, 1037, 1040, 1043
ApoI	RAATTY	2 cut(s)	434, 814
Asp700I	GAANNNNTTC	1 cut(s)	9
AspS9I	GGNCC	3 cut(s)	864, 1030, 1057
AsuC2I	CCSGG	1 cut(s)	57
AsuHPI	GGTGA	3 cut(s)	490, 594, 1031
AvaII	GGWCC	1 cut(s)	1057
BaeGI	GKGCMC	1 cut(s)	651
BamHI	GGATCC	1 cut(s)	568
BanII	GRGCYC	2 cut(s)	382, 766
Bbv12I	GWGCWC	1 cut(s)	553
BbvI	GCAGC	4 cut(s)	821, 1049, 1052, 1055
BccI	CCATC	1 cut(s)	994
BciT130I	CCWGG	3 cut(s)	189, 828, 1061
BclI	TGATCA	1 cut(s)	1021
BcnI	CCSGG	1 cut(s)	57
BcoDI	GTCTC	2 cut(s)	231, 935
BfaI	CTAG	1 cut(s)	338
BfmI	CTRYAG	1 cut(s)	367
BglII	AGATCT	1 cut(s)	318
BisI	GCNGC	4 cut(s)	810, 1038, 1041, 1044
BlsI	GCNGC	4 cut(s)	811, 1039, 1042, 1045
Bme1390I	CCNGG	4 cut(s)	57, 189, 828, 1061
Bme18I	GGWCC	1 cut(s)	1057
BmgT120I	GGNCC	3 cut(s)	864, 1030, 1057
BmiI	GGNNCC	3 cut(s)	68, 570, 1032
BmrFI	CCNGG	4 cut(s)	57, 189, 828, 1061
BplI	GAGNNNNNCTC	2 cut(s)	488, 520
BpmI	CTGGAG	2 cut(s)	786, 1068
BpuEI	CTTGAG	1 cut(s)	1016
BpuMI	CCSGG	1 cut(s)	57
Bsa29I	ATCGAT	1 cut(s)	45
BsaAI	YACGTR	1 cut(s)	646
BsaJI	CCNNGG	7 cut(s)	56, 176, 188, 300, 357, 691, 826
Bsc4I	CCNNNNNNNGG	3 cut(s)	725, 861, 943
Bse1I	ACTGG	4 cut(s)	259, 803, 820, 850
BseBI	CCWGG	3 cut(s)	189, 828, 1061
BseCI	ATCGAT	1 cut(s)	45
BseDI	CCNNGG	7 cut(s)	56, 176, 188, 300, 357, 691, 826
BseLI	CCNNNNNNNGG	3 cut(s)	725, 861, 943
BseMII	CTCAG	4 cut(s)	251, 624, 806, 851
BseNI	ACTGG	4 cut(s)	259, 803, 820, 850
BseSI	GKGCMC	1 cut(s)	651
BseXI	GCAGC	4 cut(s)	821, 1049, 1052, 1055
BseYI	CCCAGC	1 cut(s)	1033
BshFI	GGCC	3 cut(s)	866, 1012, 1031
BshVI	ATCGAT	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	553
BsiSI	CCGG	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	919
BslI	CCNNNNNNNGG	3 cut(s)	725, 861, 943
BsmAI	GTCTC	2 cut(s)	231, 935
BsmBI	CGTCTC	1 cut(s)	935
BsmFI	GGGAC	1 cut(s)	919
BsnI	GGCC	3 cut(s)	866, 1012, 1031
Bsp1286I	GDGCHC	4 cut(s)	382, 553, 651, 766
Bsp143I	GATC	5 cut(s)	42, 318, 568, 667, 1021
BspANI	GGCC	3 cut(s)	866, 1012, 1031
BspCNI	CTCAG	4 cut(s)	252, 625, 805, 852
BspDI	ATCGAT	1 cut(s)	45
BspLI	GGNNCC	3 cut(s)	68, 570, 1032
BspPI	GGATC	3 cut(s)	563, 576, 662
BspQI	GCTCTTC	1 cut(s)	78
BsrI	ACTGG	4 cut(s)	259, 803, 820, 850
BssECI	CCNNGG	7 cut(s)	56, 176, 188, 300, 357, 691, 826
BssMI	GATC	5 cut(s)	42, 318, 568, 667, 1021
BssT1I	CCWWGG	3 cut(s)	176, 357, 691
Bst2UI	CCWGG	3 cut(s)	189, 828, 1061
Bst4CI	ACNGT	1 cut(s)	588
Bst6I	CTCTTC	2 cut(s)	78, 982
BstBAI	YACGTR	1 cut(s)	646
BstDEI	CTNAG	4 cut(s)	260, 633, 792, 860
BstDSI	CCRYGG	1 cut(s)	300
BstKTI	GATC	5 cut(s)	45, 321, 571, 670, 1024
BstMAI	GTCTC	2 cut(s)	231, 935
BstMBI	GATC	5 cut(s)	42, 318, 568, 667, 1021
BstMWI	GCNNNNNNNGC	7 cut(s)	37, 281, 797, 806, 1037, 1043, 1049
BstNI	CCWGG	3 cut(s)	189, 828, 1061
BstSCI	CCNGG	4 cut(s)	55, 187, 826, 1059
BstSFI	CTRYAG	1 cut(s)	367
BstSLI	GKGCMC	1 cut(s)	651
BstV1I	GCAGC	4 cut(s)	821, 1049, 1052, 1055
BstX2I	RGATCY	2 cut(s)	318, 568
BstYI	RGATCY	2 cut(s)	318, 568
Bsu15I	ATCGAT	1 cut(s)	45
BsuRI	GGCC	3 cut(s)	866, 1012, 1031
BsuTUI	ATCGAT	1 cut(s)	45
BtgI	CCRYGG	1 cut(s)	300
BtsI	GCAGTG	1 cut(s)	1059
BtsIMutI	CAGTG	4 cut(s)	672, 934, 966, 1059
CaiI	CAGNNNCTG	1 cut(s)	1046
Cfr13I	GGNCC	3 cut(s)	864, 1030, 1057
ClaI	ATCGAT	1 cut(s)	45
Csp6I	GTAC	3 cut(s)	220, 247, 418
CviAII	CATG	5 cut(s)	346, 409, 413, 892, 985
CviQI	GTAC	3 cut(s)	220, 247, 418
DdeI	CTNAG	4 cut(s)	260, 633, 792, 860
DpnI	GATC	5 cut(s)	44, 320, 570, 669, 1023
DpnII	GATC	5 cut(s)	42, 318, 568, 667, 1021
Eam1104I	CTCTTC	2 cut(s)	78, 982
EarI	CTCTTC	2 cut(s)	78, 982
Eco130I	CCWWGG	3 cut(s)	176, 357, 691
Eco24I	GRGCYC	2 cut(s)	382, 766
Eco32I	GATATC	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	1057
Eco57I	CTGAAG	1 cut(s)	300
EcoO109I	RGGNCCY	2 cut(s)	864, 1030
EcoRII	CCWGG	3 cut(s)	187, 826, 1059
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	3 cut(s)	176, 357, 691
EcoT22I	ATGCAT	1 cut(s)	414
EcoT38I	GRGCYC	2 cut(s)	382, 766
ErhI	CCWWGG	3 cut(s)	176, 357, 691
Esp3I	CGTCTC	1 cut(s)	935
FaeI	CATG	5 cut(s)	349, 412, 416, 895, 988
FaqI	GGGAC	1 cut(s)	919
FatI	CATG	5 cut(s)	345, 408, 412, 891, 984
FbaI	TGATCA	1 cut(s)	1021
Fnu4HI	GCNGC	4 cut(s)	810, 1038, 1041, 1044
FriOI	GRGCYC	2 cut(s)	382, 766
Fsp4HI	GCNGC	4 cut(s)	810, 1038, 1041, 1044
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	4 cut(s)	810, 1038, 1041, 1044
GsaI	CCCAGC	1 cut(s)	1037
GsuI	CTGGAG	2 cut(s)	786, 1068
HaeIII	GGCC	3 cut(s)	866, 1012, 1031
HapII	CCGG	1 cut(s)	56
Hin1II	CATG	5 cut(s)	349, 412, 416, 895, 988
HinfI	GANTC	2 cut(s)	596, 635
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	3 cut(s)	490, 594, 1031
Hpy166II	GTNNAC	2 cut(s)	157, 1057
Hpy188I	TCNGA	4 cut(s)	172, 261, 634, 861
Hpy188III	TCNNGA	3 cut(s)	531, 995, 1025
Hpy8I	GTNNAC	2 cut(s)	157, 1057
HpyAV	CCTTC	4 cut(s)	106, 113, 582, 999
HpyCH4III	ACNGT	1 cut(s)	588
HpyCH4IV	ACGT	2 cut(s)	9, 645
HpyCH4V	TGCA	5 cut(s)	412, 464, 486, 809, 844
HpyF10VI	GCNNNNNNNGC	7 cut(s)	37, 281, 797, 806, 1037, 1043, 1049
HpyF3I	CTNAG	4 cut(s)	260, 633, 792, 860
HpySE526I	ACGT	2 cut(s)	9, 645
Hsp92II	CATG	5 cut(s)	349, 412, 416, 895, 988
Ksp22I	TGATCA	1 cut(s)	1021
Kzo9I	GATC	5 cut(s)	42, 318, 568, 667, 1021
LguI	GCTCTTC	1 cut(s)	78
LmnI	GCTCC	3 cut(s)	617, 805, 1049
Lsp1109I	GCAGC	4 cut(s)	821, 1049, 1052, 1055
MaeI	CTAG	1 cut(s)	338
MaeII	ACGT	2 cut(s)	9, 645
MalI	GATC	5 cut(s)	44, 320, 570, 669, 1023
MboI	GATC	5 cut(s)	42, 318, 568, 667, 1021
MboII	GAAGA	4 cut(s)	95, 591, 726, 969
MfeI	CAATTG	2 cut(s)	144, 400
MflI	RGATCY	2 cut(s)	318, 568
MhlI	GDGCHC	4 cut(s)	382, 553, 651, 766
MluCI	AATT	6 cut(s)	144, 400, 434, 814, 1066, 1075
MlyI	GAGTC	1 cut(s)	644
MmeI	TCCRAC	2 cut(s)	684, 771
Mph1103I	ATGCAT	1 cut(s)	414
MroXI	GAANNNNTTC	1 cut(s)	9
MseI	TTAA	3 cut(s)	590, 839, 1081
MspA1I	CMGCKG	2 cut(s)	17, 1046
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	4 cut(s)	57, 189, 828, 1061
MunI	CAATTG	2 cut(s)	144, 400
MvaI	CCWGG	3 cut(s)	189, 828, 1061
MwoI	GCNNNNNNNGC	7 cut(s)	37, 281, 797, 806, 1037, 1043, 1049
NciI	CCSGG	1 cut(s)	57
NdeII	GATC	5 cut(s)	42, 318, 568, 667, 1021
NlaIII	CATG	5 cut(s)	349, 412, 416, 895, 988
NlaIV	GGNNCC	3 cut(s)	68, 570, 1032
NsiI	ATGCAT	1 cut(s)	414
PciSI	GCTCTTC	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	596
PkrI	GCNGC	4 cut(s)	811, 1039, 1042, 1045
PleI	GAGTC	1 cut(s)	643
PpsI	GAGTC	1 cut(s)	643
Ppu21I	YACGTR	1 cut(s)	646
Psp6I	CCWGG	3 cut(s)	187, 826, 1059
PspFI	CCCAGC	1 cut(s)	1033
PspGI	CCWGG	3 cut(s)	187, 826, 1059
PspN4I	GGNNCC	3 cut(s)	68, 570, 1032
PspPI	GGNCC	3 cut(s)	864, 1030, 1057
PstNI	CAGNNNCTG	1 cut(s)	1046
PsuI	RGATCY	2 cut(s)	318, 568
PvuII	CAGCTG	2 cut(s)	17, 1046
RsaI	GTAC	3 cut(s)	221, 248, 419
RsaNI	GTAC	3 cut(s)	220, 247, 418
SapI	GCTCTTC	1 cut(s)	78
SaqAI	TTAA	3 cut(s)	590, 839, 1081
SatI	GCNGC	4 cut(s)	810, 1038, 1041, 1044
Sau3AI	GATC	5 cut(s)	42, 318, 568, 667, 1021
Sau96I	GGNCC	3 cut(s)	864, 1030, 1057
SchI	GAGTC	1 cut(s)	644
ScrFI	CCNGG	4 cut(s)	57, 189, 828, 1061
SduI	GDGCHC	4 cut(s)	382, 553, 651, 766
SfcI	CTRYAG	1 cut(s)	367
SinI	GGWCC	1 cut(s)	1057
SmlI	CTYRAG	1 cut(s)	995
SmoI	CTYRAG	1 cut(s)	995
Sse9I	AATT	6 cut(s)	144, 400, 434, 814, 1066, 1075
SspMI	CTAG	1 cut(s)	338
StyD4I	CCNGG	4 cut(s)	55, 187, 826, 1059
StyI	CCWWGG	3 cut(s)	176, 357, 691
TaaI	ACNGT	1 cut(s)	588
TaiI	ACGT	2 cut(s)	12, 648
TaqI	TCGA	2 cut(s)	27, 45
TasI	AATT	6 cut(s)	144, 400, 434, 814, 1066, 1075
TatI	WGTACW	1 cut(s)	417
TfiI	GAWTC	1 cut(s)	596
Tru1I	TTAA	3 cut(s)	590, 839, 1081
Tru9I	TTAA	3 cut(s)	590, 839, 1081
TscAI	CASTG	4 cut(s)	679, 934, 973, 1059
TseI	GCWGC	4 cut(s)	809, 1037, 1040, 1043
TspDTI	ATGAA	8 cut(s)	95, 96, 362, 434, 486, 576, 725, 977
TspRI	CASTG	4 cut(s)	679, 934, 973, 1059
VpaK11BI	GGWCC	1 cut(s)	1057
XapI	RAATTY	2 cut(s)	434, 814
XcmI	CCANNNNNNNNNTGG	1 cut(s)	997
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	1 cut(s)	338
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.