Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008227

Physical Location & Seq

Genomic Coordinates Reverse (-)

64113463 .. 64115333

Gene Structure 1871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00271760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGATGCAAGAAATGGAGAAGTTTGCTGTTCAAGCTGGAACTTTCAGGGAAGATGATCAGATTGATTTGCCACCGGGTTTTCGATTCCATCCAACCGATGAAGAGCTTATTTCTCACTACCTTCACAAGAAGGTTATCGATTCCAACTTCGGCTGCAAAGCAATTGGTGATGTGGACTTGAACAAGTCTGAGCCTTGGGATTTGCCATATAAAGCGAAAATGGGAGAGAAGGAATGGTACTTTTTCTGTGTGAGGGATAGAAAGTATCCGACTGGTCTGAGGACAAACAGAGCAACTGAAGCTGGATATTGGAAAGCTACTGGGAAAGACAAGGAGATTTACAAAGGGAAATCCTTGGTTGGCATGAAGAAGACCCTTGTTTTCTACAGGGGCAGAGCCCCAAAAGGTGAAAAGAGCAACTGGGTCATGCATGAATACAGACTGGAGGGTAAATTCTCAGTCCACAACCTCCCCAAATCTGCAAAGAACGAGTGGGTGATTTGTAGGGTCTTTGAAAAATCTGCTGGTGGTAAAAAAATCCATATTACCGGACTTGTGAATTCCGGTCCTCATGGAACTGAAATGGGTTCTTCGGGTTTACCACCTTTGTTGGACTCGGCGCCTTACAATGGCGCCAAGACCAGACCTGCTTCAGAGTCGAATTACGTGCCCTGCTTCTCCAACCACGAGTCCATTGATTCTCAAAGAAATCAAGGGATTGTTGATTACATCAACATCAATCCTCTTTTCTCTGTTTCCTCGATTCCTTCAAACAACAACAACGCTTTCCCACGAGTCACGTATCAGAATTCATTCTGCTCTGCTCCCGTTTCATCTGCAAATTTCCAGTTTCCGAGTTCGGTTTTAATGCAAGACCATCTGAGGGCCTTGCTTGAAAACAATGTCTCATTCATGAGGCAGAACTTCAAAACAGAGAGGGACATGATCAGTGTGTCTCAAGAAACAGGTCTTACTACTGATGTGAACCCTGAAATCTCTTCTGTCATGCCAAATCCTGAGATGGGTAGGAGGCCATTTGATGATCAAGATAACTTTTGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

354

Amino Acids

40.21

Weight (kDa)

8.14

Isoelectric Point (pI)

37.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	24 - 148	8.9e-50	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07680 AT5G07680 AT5G61430 AT5G61430
fragaria_vesca	FvH4_5g14670 FvH4_5g14670
malus_domestica	MD06G1196100.v1.1 MD14G1203000.v1.1
prunus_persica	Prupe.5G196000_v2.0.a1
pyrus_communis	pycom06g17320 pycom14g16800
rosa_chinensis	RchiOBHm_Chr7g0181751 RchiOBHm_Chr7g0181811
rosa_laevigata	RLG00000005172
rosa_multiflora	Rmu_sc0000988.1_g000005 Rmu_sc0004898.1_g000004
rosa_roxburghii	Rroxscaffold_3G00271760
rosa_rugosa	Rorug06G0443200
rosa_samantha	Rh7AG045700 Rh7BG045000 Rh7CG046400 Rh7DG045300
rosa_wichuraiana	Rw7G003810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	655
AccB1I	GGYRCC	2 cut(s)	619, 632
AcsI	RAATTY	4 cut(s)	452, 559, 808, 841
AcuI	CTGAAG	2 cut(s)	318, 636
AcyI	GRCGYC	2 cut(s)	620, 633
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	3 cut(s)	629, 883, 1022
AgsI	TTSAA	6 cut(s)	32, 181, 515, 771, 896, 928
AluBI	AGCT	4 cut(s)	35, 106, 302, 317
AluI	AGCT	4 cut(s)	35, 106, 302, 317
Alw26I	GTCTC	2 cut(s)	910, 960
AoxI	GGCC	2 cut(s)	885, 1031
ApeKI	GCWGC	1 cut(s)	153
ApoI	RAATTY	4 cut(s)	452, 559, 808, 841
Asp700I	GAANNNNTTC	1 cut(s)	812
AspLEI	GCGC	2 cut(s)	622, 635
AspS9I	GGNCC	2 cut(s)	566, 885
AsuC2I	CCSGG	1 cut(s)	75
AsuHPI	GGTGA	3 cut(s)	179, 419, 508
AvaII	GGWCC	1 cut(s)	566
BaeGI	GKGCMC	1 cut(s)	672
BanI	GGYRCC	2 cut(s)	619, 632
BanII	GRGCYC	1 cut(s)	400
BarI	GAAGNNNNNNTAC	2 cut(s)	221, 253
BauI	CACGAG	2 cut(s)	686, 792
BbsI	GAAGAC	1 cut(s)	377
BbvI	GCAGC	1 cut(s)	140
BccI	CCATC	3 cut(s)	96, 885, 1015
BcgI	CGANNNNNNTGC	2 cut(s)	649, 683
BciVI	GTATCC	1 cut(s)	276
BclI	TGATCA	3 cut(s)	55, 945, 1042
BcnI	CCSGG	1 cut(s)	75
BcoDI	GTCTC	2 cut(s)	910, 960
BfmI	CTRYAG	1 cut(s)	385
BfoI	RGCGCY	2 cut(s)	623, 636
BfuAI	ACCTGC	1 cut(s)	655
BfuI	GTATCC	1 cut(s)	276
BisI	GCNGC	1 cut(s)	154
BlsI	GCNGC	1 cut(s)	155
Bme1390I	CCNGG	1 cut(s)	75
Bme18I	GGWCC	1 cut(s)	566
BmgT120I	GGNCC	2 cut(s)	566, 885
BmiI	GGNNCC	2 cut(s)	621, 634
BmrFI	CCNGG	1 cut(s)	75
BmrI	ACTGGG	2 cut(s)	330, 430
BmuI	ACTGGG	2 cut(s)	330, 430
BpiI	GAAGAC	1 cut(s)	377
BpmI	CTGGAG	1 cut(s)	464
BpuEI	CTTGAG	1 cut(s)	942
BpuMI	CCSGG	1 cut(s)	75
Bsa29I	ATCGAT	1 cut(s)	138
BsaAI	YACGTR	2 cut(s)	667, 801
BsaHI	GRCGYC	2 cut(s)	620, 633
BsaJI	CCNNGG	2 cut(s)	194, 354
BsaWI	WCCGGW	2 cut(s)	548, 563
Bsc4I	CCNNNNNNNGG	3 cut(s)	629, 883, 1022
Bse1I	ACTGG	5 cut(s)	277, 325, 425, 447, 847
BseCI	ATCGAT	1 cut(s)	138
BseDI	CCNNGG	2 cut(s)	194, 354
BseGI	GGATG	2 cut(s)	88, 1065
BseLI	CCNNNNNNNGG	3 cut(s)	629, 883, 1022
BseMII	CTCAG	5 cut(s)	180, 269, 471, 872, 1008
BseNI	ACTGG	5 cut(s)	277, 325, 425, 447, 847
BseSI	GKGCMC	1 cut(s)	672
BseXI	GCAGC	1 cut(s)	140
BshFI	GGCC	2 cut(s)	887, 1033
BshNI	GGYRCC	2 cut(s)	619, 632
BshVI	ATCGAT	1 cut(s)	138
BsiSI	CCGG	3 cut(s)	74, 549, 564
BslFI	GGGAC	1 cut(s)	953
BslI	CCNNNNNNNGG	3 cut(s)	629, 883, 1022
BsmAI	GTCTC	2 cut(s)	910, 960
BsmFI	GGGAC	1 cut(s)	953
BsnI	GGCC	2 cut(s)	887, 1033
Bsp1286I	GDGCHC	2 cut(s)	400, 672
Bsp143I	GATC	3 cut(s)	55, 945, 1042
BspANI	GGCC	2 cut(s)	887, 1033
BspCNI	CTCAG	5 cut(s)	181, 270, 470, 873, 1009
BspDI	ATCGAT	1 cut(s)	138
BspHI	TCATGA	1 cut(s)	912
BspLI	GGNNCC	2 cut(s)	621, 634
BspMI	ACCTGC	1 cut(s)	655
BspQI	GCTCTTC	1 cut(s)	96
BspT107I	GGYRCC	2 cut(s)	619, 632
BsrI	ACTGG	5 cut(s)	277, 325, 425, 447, 847
BssECI	CCNNGG	2 cut(s)	194, 354
BssMI	GATC	3 cut(s)	55, 945, 1042
BssNI	GRCGYC	2 cut(s)	620, 633
BssSI	CACGAG	2 cut(s)	686, 792
BssT1I	CCWWGG	2 cut(s)	194, 354
Bst2BI	CACGAG	2 cut(s)	686, 792
Bst6I	CTCTTC	2 cut(s)	96, 1003
BstACI	GRCGYC	2 cut(s)	620, 633
BstBAI	YACGTR	2 cut(s)	667, 801
BstDEI	CTNAG	5 cut(s)	189, 278, 457, 881, 1017
BstF5I	GGATG	2 cut(s)	88, 1065
BstH2I	RGCGCY	2 cut(s)	623, 636
BstHHI	GCGC	2 cut(s)	622, 635
BstKTI	GATC	3 cut(s)	58, 948, 1045
BstMAI	GTCTC	2 cut(s)	910, 960
BstMBI	GATC	3 cut(s)	55, 945, 1042
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 299
BstSCI	CCNGG	1 cut(s)	73
BstSFI	CTRYAG	1 cut(s)	385
BstSLI	GKGCMC	1 cut(s)	672
BstV1I	GCAGC	1 cut(s)	140
BstV2I	GAAGAC	1 cut(s)	377
Bsu15I	ATCGAT	1 cut(s)	138
BsuI	GTATCC	1 cut(s)	276
BsuRI	GGCC	2 cut(s)	887, 1033
BsuTUI	ATCGAT	1 cut(s)	138
BtsCI	GGATG	2 cut(s)	88, 1065
BtsIMutI	CAGTG	1 cut(s)	955
BveI	ACCTGC	1 cut(s)	655
CciI	TCATGA	1 cut(s)	912
CfoI	GCGC	2 cut(s)	622, 635
Cfr13I	GGNCC	2 cut(s)	566, 885
ClaI	ATCGAT	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	238
CspCI	CAANNNNNGTGG	2 cut(s)	591, 626
CviAII	CATG	7 cut(s)	364, 427, 431, 572, 913, 943, 1006
CviJI	RGCY	9 cut(s)	35, 106, 153, 193, 302, 317, 398, 887, 1033
CviKI_1	RGCY	9 cut(s)	35, 106, 153, 193, 302, 317, 398, 887, 1033
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	5 cut(s)	189, 278, 457, 881, 1017
DinI	GGCGCC	2 cut(s)	621, 634
DpnI	GATC	3 cut(s)	57, 947, 1044
DpnII	GATC	3 cut(s)	55, 945, 1042
Eam1104I	CTCTTC	2 cut(s)	96, 1003
EarI	CTCTTC	2 cut(s)	96, 1003
Eco130I	CCWWGG	2 cut(s)	194, 354
Eco24I	GRGCYC	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	566
Eco57I	CTGAAG	2 cut(s)	318, 636
EcoO109I	RGGNCCY	1 cut(s)	885
EcoRI	GAATTC	2 cut(s)	559, 808
EcoT14I	CCWWGG	2 cut(s)	194, 354
EcoT22I	ATGCAT	1 cut(s)	432
EcoT38I	GRGCYC	1 cut(s)	400
EgeI	GGCGCC	2 cut(s)	621, 634
EheI	GGCGCC	2 cut(s)	621, 634
ErhI	CCWWGG	2 cut(s)	194, 354
FaeI	CATG	7 cut(s)	367, 430, 434, 575, 916, 946, 1009
FaqI	GGGAC	1 cut(s)	953
FatI	CATG	7 cut(s)	363, 426, 430, 571, 912, 942, 1005
FbaI	TGATCA	3 cut(s)	55, 945, 1042
Fnu4HI	GCNGC	1 cut(s)	154
FokI	GGATG	1 cut(s)	75
FriOI	GRGCYC	1 cut(s)	400
Fsp4HI	GCNGC	1 cut(s)	154
GlaI	GCGC	2 cut(s)	621, 634
GluI	GCNGC	1 cut(s)	154
GsuI	CTGGAG	1 cut(s)	464
HaeII	RGCGCY	2 cut(s)	623, 636
HaeIII	GGCC	2 cut(s)	887, 1033
HapII	CCGG	3 cut(s)	74, 549, 564
HhaI	GCGC	2 cut(s)	622, 635
Hin1I	GRCGYC	2 cut(s)	620, 633
Hin1II	CATG	7 cut(s)	367, 430, 434, 575, 916, 946, 1009
Hin6I	GCGC	2 cut(s)	620, 633
HinP1I	GCGC	2 cut(s)	620, 633
HinfI	GANTC	8 cut(s)	84, 140, 614, 656, 689, 698, 763, 795
HpaII	CCGG	3 cut(s)	74, 549, 564
HphI	GGTGA	3 cut(s)	179, 419, 508
Hpy166II	GTNNAC	4 cut(s)	175, 463, 599, 985
Hpy188I	TCNGA	8 cut(s)	60, 190, 270, 279, 655, 807, 855, 882
Hpy188III	TCNNGA	4 cut(s)	913, 959, 1016, 1046
Hpy8I	GTNNAC	4 cut(s)	175, 463, 599, 985
HpyAV	CCTTC	4 cut(s)	124, 131, 223, 777
HpyCH4IV	ACGT	2 cut(s)	666, 800
HpyCH4V	TGCA	6 cut(s)	7, 156, 430, 482, 839, 871
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 299
HpyF3I	CTNAG	5 cut(s)	189, 278, 457, 881, 1017
HpySE526I	ACGT	2 cut(s)	666, 800
Hsp92I	GRCGYC	2 cut(s)	620, 633
Hsp92II	CATG	7 cut(s)	367, 430, 434, 575, 916, 946, 1009
HspAI	GCGC	2 cut(s)	620, 633
KasI	GGCGCC	2 cut(s)	619, 632
Ksp22I	TGATCA	3 cut(s)	55, 945, 1042
Kzo9I	GATC	3 cut(s)	55, 945, 1042
LguI	GCTCTTC	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	829
Lsp1109I	GCAGC	1 cut(s)	140
MaeII	ACGT	2 cut(s)	666, 800
MaeIII	GTNAC	1 cut(s)	796
MalI	GATC	3 cut(s)	57, 947, 1044
MboI	GATC	3 cut(s)	55, 945, 1042
MboII	GAAGA	6 cut(s)	62, 113, 379, 382, 582, 990
MfeI	CAATTG	1 cut(s)	162
MhlI	GDGCHC	2 cut(s)	400, 672
MluCI	AATT	6 cut(s)	162, 452, 559, 661, 808, 841
Mly113I	GGCGCC	2 cut(s)	620, 633
MlyI	GAGTC	4 cut(s)	608, 665, 698, 804
MmeI	TCCRAC	5 cut(s)	116, 168, 293, 591, 705
Mph1103I	ATGCAT	1 cut(s)	432
MroXI	GAANNNNTTC	1 cut(s)	812
MseI	TTAA	1 cut(s)	866
MspI	CCGG	3 cut(s)	74, 549, 564
MspR9I	CCNGG	1 cut(s)	75
MunI	CAATTG	1 cut(s)	162
MwoI	GCNNNNNNNGC	2 cut(s)	32, 299
NarI	GGCGCC	2 cut(s)	620, 633
NciI	CCSGG	1 cut(s)	75
NdeII	GATC	3 cut(s)	55, 945, 1042
NlaIII	CATG	7 cut(s)	367, 430, 434, 575, 916, 946, 1009
NlaIV	GGNNCC	2 cut(s)	621, 634
NmeAIII	GCCGAG	1 cut(s)	596
NmuCI	GTSAC	1 cut(s)	796
NsiI	ATGCAT	1 cut(s)	432
PagI	TCATGA	1 cut(s)	912
PciSI	GCTCTTC	1 cut(s)	96
PdmI	GAANNNNTTC	1 cut(s)	812
PfeI	GAWTC	4 cut(s)	84, 140, 698, 763
PkrI	GCNGC	1 cut(s)	155
PleI	GAGTC	4 cut(s)	608, 664, 697, 803
PluTI	GGCGCC	2 cut(s)	623, 636
PpsI	GAGTC	4 cut(s)	608, 664, 697, 803
Ppu21I	YACGTR	2 cut(s)	667, 801
PspN4I	GGNNCC	2 cut(s)	621, 634
PspPI	GGNCC	2 cut(s)	566, 885
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SapI	GCTCTTC	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	866
SatI	GCNGC	1 cut(s)	154
Sau3AI	GATC	3 cut(s)	55, 945, 1042
Sau96I	GGNCC	2 cut(s)	566, 885
SchI	GAGTC	4 cut(s)	608, 665, 698, 804
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	2 cut(s)	400, 672
SfcI	CTRYAG	1 cut(s)	385
SfoI	GGCGCC	2 cut(s)	621, 634
SinI	GGWCC	1 cut(s)	566
SmlI	CTYRAG	1 cut(s)	957
SmoI	CTYRAG	1 cut(s)	957
Sse9I	AATT	6 cut(s)	162, 452, 559, 661, 808, 841
SspDI	GGCGCC	2 cut(s)	619, 632
StyD4I	CCNGG	1 cut(s)	73
StyI	CCWWGG	2 cut(s)	194, 354
TaiI	ACGT	2 cut(s)	669, 803
TaqI	TCGA	4 cut(s)	82, 138, 659, 761
TasI	AATT	6 cut(s)	162, 452, 559, 661, 808, 841
TfiI	GAWTC	4 cut(s)	84, 140, 698, 763
Tru1I	TTAA	1 cut(s)	866
Tru9I	TTAA	1 cut(s)	866
TscAI	CASTG	1 cut(s)	955
TseFI	GTSAC	1 cut(s)	796
TseI	GCWGC	1 cut(s)	153
Tsp45I	GTSAC	1 cut(s)	796
TspDTI	ATGAA	6 cut(s)	114, 380, 447, 801, 822, 901
TspRI	CASTG	1 cut(s)	955
VpaK11BI	GGWCC	1 cut(s)	566
XapI	RAATTY	4 cut(s)	452, 559, 808, 841
XmnI	GAANNNNTTC	1 cut(s)	812
Zsp2I	ATGCAT	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.