Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008227

Physical Location & Seq

Genomic Coordinates Reverse (-)

8328201 .. 8330307

Gene Structure 2107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g14670.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGATGCAGGAAATGGAAAAGTTTGTTCTTCCAGCTGGAAATTTCAAGGAAGACAATCAGATTGATCTACCACCCGGGTTTCGATTCCACCCAACCGATGAAGAGCTTATTTCTCACTACCTACACAAGAAGGTTATGGATTCCAACTTCGGATGCAAAGCAATTGGGGATGTGGACTTGAACAAGTCCGAGCCTTGGGATTTGCCATATAAAGCGAAAATGGGAGAAAAGGAATGGTACTTCTTCTGTGTGAGGGACAGAAAGTATCCAACTGGTCTGAGGACAAACAGAGCAACTGAGGCTGGATATTGGAAAGCTACCGGGAAAGACAAGGAGATTTACAAAGGGAAATCCCTAGTTGGCATGAAGAAGACCCTTGTGTTCTACAGAGGCAGAGCCCCAAAAGGTGAAAAGAGCAACTGGGTCATGCATGAATACAGATTGGAGGGTAAATTCTCAGTCCACAACCTCCCCAAATCTGCAAAGAACGAATGGGTGATTTGTAGGGTCTTTGAAAAATCTGCCGGTGGTAAAAAAGTCCATATCTCTGGACTTCCGAATTCGGGTTCTCGTGGAACTGAAACTGGTTCTTCTGGTTTGCCACCTTTGCTGGACTCGACGCCTTACAATGGCGCCAAGACCAGACCTGCTTCAGAGTCGACTTACGTGCCCTGCTTCTCCAACCAAGAATCCATTGATTCTCAAAGAAACCAAGGGATTGTTGATTATATCAACAACAACAATCCTCTCTTCTCTGTTTCATCCAATCCTTCAAACAACAACAACAACAACAACAACTCTTTCCCACGAGTCACGTATCAATACTCTGCTCCAGTTTCATCGGCAAATTTCCAGTTTCCGAGTTCGGTTGTAATGCAAGACCATCTGAGGGCCTTGCTTGAGAACAATGTCTCGTTCATGAGACAGAACTTCAAAACAGAGAGGGACATGATCAGTGTGTCTCAAGAAACAGGTCTTACTACTGATGTGAACCCTGAAATCTCTTCTGTCATGGCGAATCATGAGATAGGTAGAAGGCCATTTGATGATCAAGATAGCTTTTGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

357

Amino Acids

40.44

Weight (kDa)

8.66

Isoelectric Point (pI)

35.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	24 - 71	1.9e-14	No apical meristem (NAM) protein
NAM	PF02365	112 - 190	1.7e-27	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07680 AT5G07680 AT5G61430 AT5G61430
fragaria_vesca	FvH4_5g14670 FvH4_5g14670
malus_domestica	MD06G1196100.v1.1 MD14G1203000.v1.1
prunus_persica	Prupe.5G196000_v2.0.a1
pyrus_communis	pycom06g17320 pycom14g16800
rosa_chinensis	RchiOBHm_Chr7g0181751 RchiOBHm_Chr7g0181811
rosa_laevigata	RLG00000005172
rosa_multiflora	Rmu_sc0000988.1_g000005 Rmu_sc0004898.1_g000004
rosa_roxburghii	Rroxscaffold_3G00271760
rosa_rugosa	Rorug06G0443200
rosa_samantha	Rh7AG045700 Rh7BG045000 Rh7CG046400 Rh7DG045300
rosa_wichuraiana	Rw7G003810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	655
AccB1I	GGYRCC	1 cut(s)	632
AccI	GTMKAC	1 cut(s)	659
AcsI	RAATTY	4 cut(s)	40, 452, 559, 847
AcuI	CTGAAG	1 cut(s)	636
AcyI	GRCGYC	2 cut(s)	620, 633
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	4 cut(s)	195, 563, 629, 889
AgsI	TTSAA	5 cut(s)	46, 181, 515, 774, 934
AluBI	AGCT	4 cut(s)	35, 106, 317, 1059
AluI	AGCT	4 cut(s)	35, 106, 317, 1059
Alw26I	GTCTC	3 cut(s)	916, 916, 966
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	2 cut(s)	891, 1037
ApoI	RAATTY	4 cut(s)	40, 452, 559, 847
AspLEI	GCGC	1 cut(s)	635
AspS9I	GGNCC	1 cut(s)	891
AsuC2I	CCSGG	3 cut(s)	75, 76, 322
AsuHPI	GGTGA	2 cut(s)	419, 508
AvaI	CYCGRG	1 cut(s)	74
BaeGI	GKGCMC	1 cut(s)	672
BanI	GGYRCC	1 cut(s)	632
BanII	GRGCYC	1 cut(s)	400
BauI	CACGAG	2 cut(s)	570, 807
BbsI	GAAGAC	2 cut(s)	57, 377
BccI	CCATC	1 cut(s)	891
BcgI	CGANNNNNNTGC	2 cut(s)	649, 683
BciVI	GTATCC	1 cut(s)	276
BclI	TGATCA	2 cut(s)	951, 1048
BcnI	CCSGG	3 cut(s)	75, 76, 322
BcoDI	GTCTC	3 cut(s)	916, 916, 966
BfaI	CTAG	1 cut(s)	356
BfmI	CTRYAG	1 cut(s)	385
BfoI	RGCGCY	1 cut(s)	636
BfuAI	ACCTGC	1 cut(s)	655
BfuI	GTATCC	1 cut(s)	276
Bme1390I	CCNGG	3 cut(s)	75, 76, 322
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	891
BmiI	GGNNCC	1 cut(s)	634
BmrFI	CCNGG	3 cut(s)	75, 76, 322
BmrI	ACTGGG	1 cut(s)	430
BmsI	GCATC	1 cut(s)	143
BmuI	ACTGGG	1 cut(s)	430
BpiI	GAAGAC	2 cut(s)	57, 377
BpmI	CTGGAG	1 cut(s)	816
BpuEI	CTTGAG	2 cut(s)	920, 948
BpuMI	CCSGG	3 cut(s)	75, 76, 322
BsaAI	YACGTR	2 cut(s)	667, 816
BsaHI	GRCGYC	2 cut(s)	620, 633
BsaJI	CCNNGG	3 cut(s)	74, 194, 712
Bsc4I	CCNNNNNNNGG	4 cut(s)	195, 563, 629, 889
Bse118I	RCCGGY	1 cut(s)	524
Bse1I	ACTGG	5 cut(s)	277, 425, 589, 833, 853
BseDI	CCNNGG	3 cut(s)	74, 194, 712
BseGI	GGATG	4 cut(s)	158, 175, 761, 1071
BseLI	CCNNNNNNNGG	4 cut(s)	195, 563, 629, 889
BseMII	CTCAG	4 cut(s)	269, 288, 471, 878
BseNI	ACTGG	5 cut(s)	277, 425, 589, 833, 853
BseSI	GKGCMC	1 cut(s)	672
BshFI	GGCC	2 cut(s)	893, 1039
BshNI	GGYRCC	1 cut(s)	632
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	3 cut(s)	75, 321, 525
BslFI	GGGAC	2 cut(s)	269, 959
BslI	CCNNNNNNNGG	4 cut(s)	195, 563, 629, 889
BsmAI	GTCTC	3 cut(s)	916, 916, 966
BsmFI	GGGAC	2 cut(s)	269, 959
BsnI	GGCC	2 cut(s)	893, 1039
BsoBI	CYCGRG	1 cut(s)	74
Bsp1286I	GDGCHC	2 cut(s)	400, 672
Bsp143I	GATC	3 cut(s)	64, 951, 1048
BspANI	GGCC	2 cut(s)	893, 1039
BspCNI	CTCAG	4 cut(s)	270, 289, 470, 879
BspHI	TCATGA	2 cut(s)	918, 1021
BspLI	GGNNCC	1 cut(s)	634
BspMI	ACCTGC	1 cut(s)	655
BspQI	GCTCTTC	1 cut(s)	96
BspT107I	GGYRCC	1 cut(s)	632
BsrFI	RCCGGY	1 cut(s)	524
BsrI	ACTGG	5 cut(s)	277, 425, 589, 833, 853
BssAI	RCCGGY	1 cut(s)	524
BssECI	CCNNGG	3 cut(s)	74, 194, 712
BssMI	GATC	3 cut(s)	64, 951, 1048
BssNI	GRCGYC	2 cut(s)	620, 633
BssSI	CACGAG	2 cut(s)	570, 807
BssT1I	CCWWGG	2 cut(s)	194, 712
Bst2BI	CACGAG	2 cut(s)	570, 807
Bst6I	CTCTTC	3 cut(s)	96, 755, 1009
BstACI	GRCGYC	2 cut(s)	620, 633
BstBAI	YACGTR	2 cut(s)	667, 816
BstDEI	CTNAG	4 cut(s)	278, 297, 457, 887
BstF5I	GGATG	4 cut(s)	158, 175, 761, 1071
BstH2I	RGCGCY	1 cut(s)	636
BstHHI	GCGC	1 cut(s)	635
BstKTI	GATC	3 cut(s)	67, 954, 1051
BstMAI	GTCTC	3 cut(s)	916, 916, 966
BstMBI	GATC	3 cut(s)	64, 951, 1048
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 607
BstSCI	CCNGG	3 cut(s)	73, 74, 320
BstSFI	CTRYAG	1 cut(s)	385
BstSLI	GKGCMC	1 cut(s)	672
BstV2I	GAAGAC	2 cut(s)	57, 377
BstXI	CCANNNNNNTGG	1 cut(s)	548
BsuI	GTATCC	1 cut(s)	276
BsuRI	GGCC	2 cut(s)	893, 1039
BtsCI	GGATG	4 cut(s)	158, 175, 761, 1071
BtsIMutI	CAGTG	1 cut(s)	961
BveI	ACCTGC	1 cut(s)	655
CciI	TCATGA	2 cut(s)	918, 1021
CfoI	GCGC	1 cut(s)	635
Cfr10I	RCCGGY	1 cut(s)	524
Cfr13I	GGNCC	1 cut(s)	891
Cfr9I	CCCGGG	1 cut(s)	74
CseI	GACGC	1 cut(s)	628
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	7 cut(s)	364, 427, 431, 919, 949, 1012, 1022
CviJI	RGCY	9 cut(s)	35, 106, 193, 302, 317, 398, 893, 1039, 1059
CviKI_1	RGCY	9 cut(s)	35, 106, 193, 302, 317, 398, 893, 1039, 1059
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	4 cut(s)	278, 297, 457, 887
DinI	GGCGCC	1 cut(s)	634
DpnI	GATC	3 cut(s)	66, 953, 1050
DpnII	GATC	3 cut(s)	64, 951, 1048
Eam1104I	CTCTTC	3 cut(s)	96, 755, 1009
EarI	CTCTTC	3 cut(s)	96, 755, 1009
Eco130I	CCWWGG	2 cut(s)	194, 712
Eco24I	GRGCYC	1 cut(s)	400
Eco57I	CTGAAG	1 cut(s)	636
Eco88I	CYCGRG	1 cut(s)	74
EcoO109I	RGGNCCY	1 cut(s)	891
EcoRI	GAATTC	1 cut(s)	559
EcoT14I	CCWWGG	2 cut(s)	194, 712
EcoT22I	ATGCAT	1 cut(s)	432
EcoT38I	GRGCYC	1 cut(s)	400
EgeI	GGCGCC	1 cut(s)	634
EheI	GGCGCC	1 cut(s)	634
ErhI	CCWWGG	2 cut(s)	194, 712
FaeI	CATG	7 cut(s)	367, 430, 434, 922, 952, 1015, 1025
FaqI	GGGAC	2 cut(s)	269, 959
FatI	CATG	7 cut(s)	363, 426, 430, 918, 948, 1011, 1021
FbaI	TGATCA	2 cut(s)	951, 1048
FblI	GTMKAC	1 cut(s)	659
FokI	GGATG	3 cut(s)	165, 182, 748
FriOI	GRGCYC	1 cut(s)	400
FspBI	CTAG	1 cut(s)	356
GlaI	GCGC	1 cut(s)	634
GsuI	CTGGAG	1 cut(s)	816
HaeII	RGCGCY	1 cut(s)	636
HaeIII	GGCC	2 cut(s)	893, 1039
HapII	CCGG	3 cut(s)	75, 321, 525
HgaI	GACGC	1 cut(s)	628
HhaI	GCGC	1 cut(s)	635
Hin1I	GRCGYC	2 cut(s)	620, 633
Hin1II	CATG	7 cut(s)	367, 430, 434, 922, 952, 1015, 1025
Hin6I	GCGC	1 cut(s)	633
HinP1I	GCGC	1 cut(s)	633
HincII	GTYRAC	1 cut(s)	660
HindII	GTYRAC	1 cut(s)	660
HinfI	GANTC	8 cut(s)	84, 140, 614, 656, 689, 698, 810, 1018
HpaII	CCGG	3 cut(s)	75, 321, 525
HphI	GGTGA	2 cut(s)	419, 508
Hpy166II	GTNNAC	4 cut(s)	175, 463, 660, 991
Hpy188I	TCNGA	8 cut(s)	60, 152, 190, 279, 558, 655, 861, 888
Hpy188III	TCNNGA	5 cut(s)	549, 919, 965, 1022, 1052
Hpy8I	GTNNAC	4 cut(s)	175, 463, 660, 991
Hpy99I	CGWCG	1 cut(s)	622
HpyAV	CCTTC	3 cut(s)	124, 780, 1029
HpyCH4IV	ACGT	2 cut(s)	666, 815
HpyCH4V	TGCA	5 cut(s)	7, 156, 430, 482, 877
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 607
HpyF3I	CTNAG	4 cut(s)	278, 297, 457, 887
HpySE526I	ACGT	2 cut(s)	666, 815
Hsp92I	GRCGYC	2 cut(s)	620, 633
Hsp92II	CATG	7 cut(s)	367, 430, 434, 922, 952, 1015, 1025
HspAI	GCGC	1 cut(s)	633
KasI	GGCGCC	1 cut(s)	632
Ksp22I	TGATCA	2 cut(s)	951, 1048
Kzo9I	GATC	3 cut(s)	64, 951, 1048
LguI	GCTCTTC	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	835
LweI	GCATC	1 cut(s)	143
MaeI	CTAG	1 cut(s)	356
MaeII	ACGT	2 cut(s)	666, 815
MaeIII	GTNAC	1 cut(s)	811
MalI	GATC	3 cut(s)	66, 953, 1050
MboI	GATC	3 cut(s)	64, 951, 1048
MboII	GAAGA	9 cut(s)	20, 62, 113, 235, 379, 382, 582, 742, 996
MfeI	CAATTG	1 cut(s)	162
MhlI	GDGCHC	2 cut(s)	400, 672
MluCI	AATT	5 cut(s)	40, 162, 452, 559, 847
Mly113I	GGCGCC	1 cut(s)	633
MlyI	GAGTC	3 cut(s)	608, 665, 819
MmeI	TCCRAC	3 cut(s)	168, 293, 705
MnlI	CCTC	9 cut(s)	246, 273, 292, 383, 439, 479, 756, 882, 936
Mph1103I	ATGCAT	1 cut(s)	432
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	3 cut(s)	75, 321, 525
MspR9I	CCNGG	3 cut(s)	75, 76, 322
MunI	CAATTG	1 cut(s)	162
MwoI	GCNNNNNNNGC	2 cut(s)	299, 607
NarI	GGCGCC	1 cut(s)	633
NciI	CCSGG	3 cut(s)	75, 76, 322
NdeII	GATC	3 cut(s)	64, 951, 1048
NlaIII	CATG	7 cut(s)	367, 430, 434, 922, 952, 1015, 1025
NlaIV	GGNNCC	1 cut(s)	634
NmuCI	GTSAC	1 cut(s)	811
NsiI	ATGCAT	1 cut(s)	432
PagI	TCATGA	2 cut(s)	918, 1021
PciSI	GCTCTTC	1 cut(s)	96
PfeI	GAWTC	5 cut(s)	84, 140, 689, 698, 1018
PleI	GAGTC	3 cut(s)	608, 664, 818
PluTI	GGCGCC	1 cut(s)	636
PpsI	GAGTC	3 cut(s)	608, 664, 818
Ppu21I	YACGTR	2 cut(s)	667, 816
PspN4I	GGNNCC	1 cut(s)	634
PspPI	GGNCC	1 cut(s)	891
PvuII	CAGCTG	1 cut(s)	35
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SalI	GTCGAC	1 cut(s)	658
SapI	GCTCTTC	1 cut(s)	96
Sau3AI	GATC	3 cut(s)	64, 951, 1048
Sau96I	GGNCC	1 cut(s)	891
SchI	GAGTC	3 cut(s)	608, 665, 819
ScrFI	CCNGG	3 cut(s)	75, 76, 322
SduI	GDGCHC	2 cut(s)	400, 672
SfaNI	GCATC	1 cut(s)	143
SfcI	CTRYAG	1 cut(s)	385
SfoI	GGCGCC	1 cut(s)	634
SmaI	CCCGGG	1 cut(s)	76
SmlI	CTYRAG	2 cut(s)	899, 963
SmoI	CTYRAG	2 cut(s)	899, 963
Sse9I	AATT	5 cut(s)	40, 162, 452, 559, 847
SspDI	GGCGCC	1 cut(s)	632
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	3 cut(s)	73, 74, 320
StyI	CCWWGG	2 cut(s)	194, 712
TaiI	ACGT	2 cut(s)	669, 818
TaqI	TCGA	3 cut(s)	82, 617, 659
TasI	AATT	5 cut(s)	40, 162, 452, 559, 847
TfiI	GAWTC	5 cut(s)	84, 140, 689, 698, 1018
TscAI	CASTG	1 cut(s)	961
TseFI	GTSAC	1 cut(s)	811
Tsp45I	GTSAC	1 cut(s)	811
TspDTI	ATGAA	6 cut(s)	114, 380, 447, 750, 828, 907
TspMI	CCCGGG	1 cut(s)	74
TspRI	CASTG	1 cut(s)	961
XapI	RAATTY	4 cut(s)	40, 452, 559, 847
XmaI	CCCGGG	1 cut(s)	74
XmiI	GTMKAC	1 cut(s)	659
XspI	CTAG	1 cut(s)	356
Zsp2I	ATGCAT	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.