Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008227

Physical Location & Seq

Genomic Coordinates Reverse (-)

65628866 .. 65630155

Gene Structure 1290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005172

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGCAAGAAATGGAGAAGTTTGCCGTTCAAGCTGGAACTTTCAAGGAAGATGATCAGATTGATTTGCCACCGGGGTTTCGATTCCATCCAACCGATGAAGAGCTTATTTCTCACTACCTGCACAAGAAGGTTATCGATTCCAACTTCGGCTGCAAAGCAATTGGTGATGTGGACTTGAACAAGTCTGAGCCTTGGGATTTGCCATATAAAGCGAAAATGGGAGAGAAGGAATGGTACTTTTTCTGTGTGAGGGATAGAAAGTATCCGACTGGTCTGAGGACAAACAGGGCGACTGAAGCTGGATATTGGAAAGCTACTGGGAAAGACAAGGAGATTTACAAAGGGAAATCCTTGGTTGGCATGAAGAAGACCCTTGTTTTCTACAGGGGCAGAGCCCCAAAAGGTGAAAAGAGCAACTGGGTCATGCATGAATACAGACTGGAGGGTAAATTCTCAGTCCACAACCTCCCCAAATCTGCAAAGAACGAATGGGTGATTTGTAGGGTCTTTGAAAAATCTGCTGGTGGTAAAAAAATCCATATTACTGGACTTGTGAATTCCGGTCCTCATGGAACTGAAATGGGTTCTTCTGGTTTACCACCTTTGTTGGACTCAGCGCCTTACAATGGCGCCAAGACCAGACCTGCTTCAGAGTCGAATTACGTGCCCTGCTTCTCCAACCATGAGTCCATTGATTCTCAAAGAAATCAAGGGATTGTTGATTACATCAACATCAATCCTCTTTTCTCTGTTTCTTCAAATCCTTCAAACAACAACAACGCTTTCCCACGAGTCACGTATCAGAATTCACTCTGCTCTGCTCCCGTTTCATCTGCGAATTTCCAGTTTCCGAGTTCGGTTTTAATGCAAGACCATCTGAGGGCCTTGCTTGAAAACAATGTCTCATTCATGAGGCAGAACTTCAAAACAGAGAGGGACATGATCAGCGTGTCTCAAGAAACAGGTCTTACTACTGAAGTGAACCCTGAAATCTCTTCTGTCATGCCAAATCCTGAGATGGGTAGGAGGCCATTTGATGATCAAGATAACTTTTGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

354

Amino Acids

40.03

Weight (kDa)

8.14

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	23 - 147	8.9e-50	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07680 AT5G07680 AT5G61430 AT5G61430
fragaria_vesca	FvH4_5g14670 FvH4_5g14670
malus_domestica	MD06G1196100.v1.1 MD14G1203000.v1.1
prunus_persica	Prupe.5G196000_v2.0.a1
pyrus_communis	pycom06g17320 pycom14g16800
rosa_chinensis	RchiOBHm_Chr7g0181751 RchiOBHm_Chr7g0181811
rosa_laevigata	RLG00000005172
rosa_multiflora	Rmu_sc0000988.1_g000005 Rmu_sc0004898.1_g000004
rosa_roxburghii	Rroxscaffold_3G00271760
rosa_rugosa	Rorug06G0443200
rosa_samantha	Rh7AG045700 Rh7BG045000 Rh7CG046400 Rh7DG045300
rosa_wichuraiana	Rw7G003810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	126, 652
AccB1I	GGYRCC	1 cut(s)	629
AcsI	RAATTY	4 cut(s)	449, 556, 805, 838
AcuI	CTGAAG	3 cut(s)	315, 633, 996
AcyI	GRCGYC	1 cut(s)	630
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	3 cut(s)	626, 880, 1019
AgsI	TTSAA	8 cut(s)	29, 43, 178, 512, 759, 768, 893, 925
AluBI	AGCT	4 cut(s)	32, 103, 299, 314
AluI	AGCT	4 cut(s)	32, 103, 299, 314
Alw26I	GTCTC	2 cut(s)	907, 957
AoxI	GGCC	2 cut(s)	882, 1028
ApeKI	GCWGC	1 cut(s)	150
ApoI	RAATTY	4 cut(s)	449, 556, 805, 838
AspLEI	GCGC	2 cut(s)	619, 632
AspS9I	GGNCC	2 cut(s)	563, 882
AsuC2I	CCSGG	1 cut(s)	72
AsuHPI	GGTGA	3 cut(s)	176, 416, 505
AvaII	GGWCC	1 cut(s)	563
BaeGI	GKGCMC	1 cut(s)	669
BanI	GGYRCC	1 cut(s)	629
BanII	GRGCYC	1 cut(s)	397
BarI	GAAGNNNNNNTAC	2 cut(s)	218, 250
BauI	CACGAG	1 cut(s)	789
BbsI	GAAGAC	1 cut(s)	374
BbvI	GCAGC	1 cut(s)	137
BccI	CCATC	3 cut(s)	93, 882, 1012
BceAI	ACGGC	1 cut(s)	8
BcgI	CGANNNNNNTGC	2 cut(s)	646, 680
BciVI	GTATCC	1 cut(s)	273
BclI	TGATCA	3 cut(s)	52, 942, 1039
BcnI	CCSGG	1 cut(s)	72
BcoDI	GTCTC	2 cut(s)	907, 957
BfmI	CTRYAG	1 cut(s)	382
BfoI	RGCGCY	2 cut(s)	620, 633
BfuAI	ACCTGC	2 cut(s)	126, 652
BfuI	GTATCC	1 cut(s)	273
BisI	GCNGC	1 cut(s)	151
BlsI	GCNGC	1 cut(s)	152
Bme1390I	CCNGG	1 cut(s)	72
Bme18I	GGWCC	1 cut(s)	563
BmgT120I	GGNCC	2 cut(s)	563, 882
BmiI	GGNNCC	1 cut(s)	631
BmrFI	CCNGG	1 cut(s)	72
BmrI	ACTGGG	2 cut(s)	327, 427
BmuI	ACTGGG	2 cut(s)	327, 427
BpiI	GAAGAC	1 cut(s)	374
BpmI	CTGGAG	1 cut(s)	461
BpuEI	CTTGAG	1 cut(s)	939
BpuMI	CCSGG	1 cut(s)	72
Bsa29I	ATCGAT	1 cut(s)	135
BsaAI	YACGTR	2 cut(s)	664, 798
BsaHI	GRCGYC	1 cut(s)	630
BsaJI	CCNNGG	3 cut(s)	71, 191, 351
BsaWI	WCCGGW	1 cut(s)	560
Bsc4I	CCNNNNNNNGG	3 cut(s)	626, 880, 1019
Bse1I	ACTGG	6 cut(s)	274, 322, 422, 444, 550, 844
BseCI	ATCGAT	1 cut(s)	135
BseDI	CCNNGG	3 cut(s)	71, 191, 351
BseGI	GGATG	2 cut(s)	85, 1062
BseLI	CCNNNNNNNGG	3 cut(s)	626, 880, 1019
BseMII	CTCAG	6 cut(s)	177, 266, 468, 627, 869, 1005
BseNI	ACTGG	6 cut(s)	274, 322, 422, 444, 550, 844
BseSI	GKGCMC	1 cut(s)	669
BseXI	GCAGC	1 cut(s)	137
BsgI	GTGCAG	1 cut(s)	104
BshFI	GGCC	2 cut(s)	884, 1030
BshNI	GGYRCC	1 cut(s)	629
BshVI	ATCGAT	1 cut(s)	135
BsiSI	CCGG	2 cut(s)	71, 561
BslFI	GGGAC	1 cut(s)	950
BslI	CCNNNNNNNGG	3 cut(s)	626, 880, 1019
BsmAI	GTCTC	2 cut(s)	907, 957
BsmFI	GGGAC	1 cut(s)	950
BsnI	GGCC	2 cut(s)	884, 1030
Bsp1286I	GDGCHC	2 cut(s)	397, 669
Bsp143I	GATC	3 cut(s)	52, 942, 1039
BspANI	GGCC	2 cut(s)	884, 1030
BspCNI	CTCAG	6 cut(s)	178, 267, 467, 626, 870, 1006
BspDI	ATCGAT	1 cut(s)	135
BspHI	TCATGA	1 cut(s)	909
BspLI	GGNNCC	1 cut(s)	631
BspMI	ACCTGC	2 cut(s)	126, 652
BspQI	GCTCTTC	1 cut(s)	93
BspT107I	GGYRCC	1 cut(s)	629
BsrI	ACTGG	6 cut(s)	274, 322, 422, 444, 550, 844
BssECI	CCNNGG	3 cut(s)	71, 191, 351
BssMI	GATC	3 cut(s)	52, 942, 1039
BssNI	GRCGYC	1 cut(s)	630
BssSI	CACGAG	1 cut(s)	789
BssT1I	CCWWGG	2 cut(s)	191, 351
Bst2BI	CACGAG	1 cut(s)	789
Bst6I	CTCTTC	2 cut(s)	93, 1000
BstACI	GRCGYC	1 cut(s)	630
BstBAI	YACGTR	2 cut(s)	664, 798
BstDEI	CTNAG	6 cut(s)	186, 275, 454, 613, 878, 1014
BstF5I	GGATG	2 cut(s)	85, 1062
BstH2I	RGCGCY	2 cut(s)	620, 633
BstHHI	GCGC	2 cut(s)	619, 632
BstKTI	GATC	3 cut(s)	55, 945, 1042
BstMAI	GTCTC	2 cut(s)	907, 957
BstMBI	GATC	3 cut(s)	52, 942, 1039
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 296
BstSCI	CCNGG	1 cut(s)	70
BstSFI	CTRYAG	1 cut(s)	382
BstSLI	GKGCMC	1 cut(s)	669
BstV1I	GCAGC	1 cut(s)	137
BstV2I	GAAGAC	1 cut(s)	374
BstXI	CCANNNNNNTGG	1 cut(s)	545
Bsu15I	ATCGAT	1 cut(s)	135
BsuI	GTATCC	1 cut(s)	273
BsuRI	GGCC	2 cut(s)	884, 1030
BsuTUI	ATCGAT	1 cut(s)	135
BtsCI	GGATG	2 cut(s)	85, 1062
BveI	ACCTGC	2 cut(s)	126, 652
CciI	TCATGA	1 cut(s)	909
CfoI	GCGC	2 cut(s)	619, 632
Cfr13I	GGNCC	2 cut(s)	563, 882
ClaI	ATCGAT	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	235
CspCI	CAANNNNNGTGG	2 cut(s)	588, 623
CviAII	CATG	8 cut(s)	361, 424, 428, 569, 683, 910, 940, 1003
CviJI	RGCY	9 cut(s)	32, 103, 150, 190, 299, 314, 395, 884, 1030
CviKI_1	RGCY	9 cut(s)	32, 103, 150, 190, 299, 314, 395, 884, 1030
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	6 cut(s)	186, 275, 454, 613, 878, 1014
DinI	GGCGCC	1 cut(s)	631
DpnI	GATC	3 cut(s)	54, 944, 1041
DpnII	GATC	3 cut(s)	52, 942, 1039
Eam1104I	CTCTTC	2 cut(s)	93, 1000
EarI	CTCTTC	2 cut(s)	93, 1000
Eco130I	CCWWGG	2 cut(s)	191, 351
Eco24I	GRGCYC	1 cut(s)	397
Eco47I	GGWCC	1 cut(s)	563
Eco57I	CTGAAG	3 cut(s)	315, 633, 996
EcoO109I	RGGNCCY	1 cut(s)	882
EcoRI	GAATTC	2 cut(s)	556, 805
EcoT14I	CCWWGG	2 cut(s)	191, 351
EcoT22I	ATGCAT	1 cut(s)	429
EcoT38I	GRGCYC	1 cut(s)	397
EgeI	GGCGCC	1 cut(s)	631
EheI	GGCGCC	1 cut(s)	631
ErhI	CCWWGG	2 cut(s)	191, 351
FaeI	CATG	8 cut(s)	364, 427, 431, 572, 686, 913, 943, 1006
FaqI	GGGAC	1 cut(s)	950
FatI	CATG	8 cut(s)	360, 423, 427, 568, 682, 909, 939, 1002
FbaI	TGATCA	3 cut(s)	52, 942, 1039
Fnu4HI	GCNGC	1 cut(s)	151
FokI	GGATG	1 cut(s)	72
FriOI	GRGCYC	1 cut(s)	397
Fsp4HI	GCNGC	1 cut(s)	151
GlaI	GCGC	2 cut(s)	618, 631
GluI	GCNGC	1 cut(s)	151
GsuI	CTGGAG	1 cut(s)	461
HaeII	RGCGCY	2 cut(s)	620, 633
HaeIII	GGCC	2 cut(s)	884, 1030
HapII	CCGG	2 cut(s)	71, 561
HhaI	GCGC	2 cut(s)	619, 632
Hin1I	GRCGYC	1 cut(s)	630
Hin1II	CATG	8 cut(s)	364, 427, 431, 572, 686, 913, 943, 1006
Hin6I	GCGC	2 cut(s)	617, 630
HinP1I	GCGC	2 cut(s)	617, 630
HinfI	GANTC	7 cut(s)	81, 137, 611, 653, 686, 695, 792
HpaII	CCGG	2 cut(s)	71, 561
HphI	GGTGA	3 cut(s)	176, 416, 505
Hpy166II	GTNNAC	4 cut(s)	172, 460, 596, 982
Hpy188I	TCNGA	8 cut(s)	57, 187, 267, 276, 652, 804, 852, 879
Hpy188III	TCNNGA	4 cut(s)	910, 956, 1013, 1043
Hpy8I	GTNNAC	4 cut(s)	172, 460, 596, 982
HpyAV	CCTTC	3 cut(s)	121, 220, 774
HpyCH4IV	ACGT	2 cut(s)	663, 797
HpyCH4V	TGCA	6 cut(s)	4, 121, 153, 427, 479, 868
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 296
HpyF3I	CTNAG	6 cut(s)	186, 275, 454, 613, 878, 1014
HpySE526I	ACGT	2 cut(s)	663, 797
Hsp92I	GRCGYC	1 cut(s)	630
Hsp92II	CATG	8 cut(s)	364, 427, 431, 572, 686, 913, 943, 1006
HspAI	GCGC	2 cut(s)	617, 630
KasI	GGCGCC	1 cut(s)	629
Ksp22I	TGATCA	3 cut(s)	52, 942, 1039
Kzo9I	GATC	3 cut(s)	52, 942, 1039
LguI	GCTCTTC	1 cut(s)	93
LmnI	GCTCC	1 cut(s)	826
Lsp1109I	GCAGC	1 cut(s)	137
MaeII	ACGT	2 cut(s)	663, 797
MaeIII	GTNAC	1 cut(s)	793
MalI	GATC	3 cut(s)	54, 944, 1041
MboI	GATC	3 cut(s)	52, 942, 1039
MboII	GAAGA	7 cut(s)	59, 110, 376, 379, 579, 747, 987
MfeI	CAATTG	1 cut(s)	159
MhlI	GDGCHC	2 cut(s)	397, 669
MluCI	AATT	6 cut(s)	159, 449, 556, 658, 805, 838
Mly113I	GGCGCC	1 cut(s)	630
MlyI	GAGTC	4 cut(s)	605, 662, 695, 801
MmeI	TCCRAC	5 cut(s)	113, 165, 290, 588, 702
Mph1103I	ATGCAT	1 cut(s)	429
MseI	TTAA	1 cut(s)	863
MspI	CCGG	2 cut(s)	71, 561
MspR9I	CCNGG	1 cut(s)	72
MunI	CAATTG	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	29, 296
NarI	GGCGCC	1 cut(s)	630
NciI	CCSGG	1 cut(s)	72
NdeII	GATC	3 cut(s)	52, 942, 1039
NlaIII	CATG	8 cut(s)	364, 427, 431, 572, 686, 913, 943, 1006
NlaIV	GGNNCC	1 cut(s)	631
NmuCI	GTSAC	1 cut(s)	793
NsiI	ATGCAT	1 cut(s)	429
PagI	TCATGA	1 cut(s)	909
PciSI	GCTCTTC	1 cut(s)	93
PfeI	GAWTC	3 cut(s)	81, 137, 695
PkrI	GCNGC	1 cut(s)	152
PleI	GAGTC	4 cut(s)	605, 661, 694, 800
PluTI	GGCGCC	1 cut(s)	633
PpsI	GAGTC	4 cut(s)	605, 661, 694, 800
Ppu21I	YACGTR	2 cut(s)	664, 798
PspN4I	GGNNCC	1 cut(s)	631
PspPI	GGNCC	2 cut(s)	563, 882
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SapI	GCTCTTC	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	863
SatI	GCNGC	1 cut(s)	151
Sau3AI	GATC	3 cut(s)	52, 942, 1039
Sau96I	GGNCC	2 cut(s)	563, 882
SchI	GAGTC	4 cut(s)	605, 662, 695, 801
ScrFI	CCNGG	1 cut(s)	72
SduI	GDGCHC	2 cut(s)	397, 669
SfcI	CTRYAG	1 cut(s)	382
SfoI	GGCGCC	1 cut(s)	631
SinI	GGWCC	1 cut(s)	563
SmlI	CTYRAG	1 cut(s)	954
SmoI	CTYRAG	1 cut(s)	954
Sse9I	AATT	6 cut(s)	159, 449, 556, 658, 805, 838
SspDI	GGCGCC	1 cut(s)	629
StyD4I	CCNGG	1 cut(s)	70
StyI	CCWWGG	2 cut(s)	191, 351
TaiI	ACGT	2 cut(s)	666, 800
TaqI	TCGA	3 cut(s)	79, 135, 656
TasI	AATT	6 cut(s)	159, 449, 556, 658, 805, 838
TfiI	GAWTC	3 cut(s)	81, 137, 695
Tru1I	TTAA	1 cut(s)	863
Tru9I	TTAA	1 cut(s)	863
TseFI	GTSAC	1 cut(s)	793
TseI	GCWGC	1 cut(s)	150
Tsp45I	GTSAC	1 cut(s)	793
TspDTI	ATGAA	5 cut(s)	111, 377, 444, 819, 898
VpaK11BI	GGWCC	1 cut(s)	563
XapI	RAATTY	4 cut(s)	449, 556, 805, 838
Zsp2I	ATGCAT	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.