Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0008227

Physical Location & Seq

Genomic Coordinates Forward (+)

21305234 .. 21306725

Gene Structure 1492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g17320.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGAAAACGTTCCAGCTGGGATTGTTGAGGAGGATGATCAGATCGATTTGCCGCCGGGATTTCGATTCCATCCAACCAATGAAGAGCTTATTTCTCACTACTTGCACAAGAAGGTGATCGATACCAGCTTCTCTTGTAAAGCAATTGGGGAGGTGGACTTGAACAAGTCAGAGCCTTGGGAATTGCCTTGGAAAGCGAAAATGGGAGAAAAGGAGTGGTACTTTTTTTGTGTGAGAGACAGAAAGTACCCAACTGGTCTGAGGACAAACAGGGCGACAGAAGCCGGATACTGGAAAGCTACAGGGAAGGATAAGGAGATTTACAGAGGAAAATCTCTGGTTGGGATGAAGAAAACCTTGGTTTTCTACAAAGGAAGAGCTCCCAAAGGAGAAAAAAGTAACTGGGTGATGCATGAATATAGATTGGATGGTAAATTCTCTGTCCACAACCTCCCCAAAACTGCAAAGAATGAATGGGTGATCTGCAGGGTTTTTGAAAAGAATTCTGGTGGCAAGAAAACCCATTTTTCTGGATATGTGAGTTTGGGTTCTCTCGGAAATGAAATCGGTCCTTCTGGCTTACCGCCATTGATGGATTCTTCACCCTATAGCGCCGCCAAGGCCAAACCTGCTTCCGAGTCCCATTACGTGCCCTGCTTCTCCAACCCTGATCCCACTGATGTTCAAGGAAACCAAGGGAATATTGTTGATTACATGAACAACAATACTCTCTTTGGTGTTTCTTCAAACACTTCAAACTCTTTCCCAATAATCCCATTTCCCAATTCATTCTACTCTGCTGATAATGCTCCGATTTCACCGAATTTTCAGTTCCCGTGTTCAAATTTACTGCAAGATCAGTCCATCCTGCGGGCCTTGTTTGAAAACAATGCAGCGAACATGAGGCAGCCTAGCTTCAAAACAGAGAGAGAAATGGTGAGTGTGTCACAAGAAACCGGCCTTACAAGCGATATGAACACTGAAATCCCTTCAGTCATGTCAAATCTTAACATGGCAAGAAGGCCATTTGGTGTTCAAGATCCTCCAGCTGCAGCAGCAGGCCTGGATAATTTTTGGAATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

362

Amino Acids

40.47

Weight (kDa)

7.05

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07680 AT5G07680 AT5G61430 AT5G61430
fragaria_vesca	FvH4_5g14670 FvH4_5g14670
malus_domestica	MD06G1196100.v1.1 MD14G1203000.v1.1
prunus_persica	Prupe.5G196000_v2.0.a1
pyrus_communis	pycom06g17320 pycom14g16800
rosa_chinensis	RchiOBHm_Chr7g0181751 RchiOBHm_Chr7g0181811
rosa_laevigata	RLG00000005172
rosa_multiflora	Rmu_sc0000988.1_g000005 Rmu_sc0004898.1_g000004
rosa_roxburghii	Rroxscaffold_3G00271760
rosa_rugosa	Rorug06G0443200
rosa_samantha	Rh7AG045700 Rh7BG045000 Rh7CG046400 Rh7DG045300
rosa_wichuraiana	Rw7G003810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	637
AciI	CCGC	4 cut(s)	53, 584, 615, 871
AclI	AACGTT	1 cut(s)	9
AclWI	GGATC	2 cut(s)	665, 1034
AcsI	RAATTY	4 cut(s)	434, 502, 823, 844
AcuI	CTGAAG	1 cut(s)	975
AfaI	GTAC	2 cut(s)	221, 248
AfiI	CCNNNNNNNGG	2 cut(s)	291, 870
AgsI	TTSAA	9 cut(s)	163, 497, 686, 747, 756, 843, 884, 919, 1037
AjnI	CCWGG	1 cut(s)	1062
AjuI	GAANNNNNNNTTGG	2 cut(s)	341, 373
AluBI	AGCT	7 cut(s)	17, 88, 129, 299, 380, 915, 1049
AluI	AGCT	7 cut(s)	17, 88, 129, 299, 380, 915, 1049
Alw21I	GWGCWC	1 cut(s)	382
Alw26I	GTCTC	1 cut(s)	231
AlwI	GGATC	2 cut(s)	665, 1034
AoxI	GGCC	5 cut(s)	621, 873, 958, 1022, 1060
ApeKI	GCWGC	5 cut(s)	893, 907, 1049, 1052, 1055
ApoI	RAATTY	4 cut(s)	434, 502, 823, 844
Asp700I	GAANNNNTTC	1 cut(s)	9
AspLEI	GCGC	1 cut(s)	614
AspS9I	GGNCC	2 cut(s)	569, 873
AsuC2I	CCSGG	1 cut(s)	57
AsuHPI	GGTGA	6 cut(s)	127, 418, 490, 594, 810, 949
AvaII	GGWCC	1 cut(s)	569
BaeGI	GKGCMC	1 cut(s)	654
BanII	GRGCYC	1 cut(s)	382
Bbv12I	GWGCWC	1 cut(s)	382
BbvI	GCAGC	5 cut(s)	905, 919, 1036, 1064, 1067
BccI	CCATC	4 cut(s)	78, 422, 586, 872
BciT130I	CCWGG	1 cut(s)	1064
BciVI	GTATCC	1 cut(s)	281
BclI	TGATCA	1 cut(s)	37
BcnI	CCSGG	1 cut(s)	57
BcoDI	GTCTC	1 cut(s)	231
BfaI	CTAG	1 cut(s)	912
BfmI	CTRYAG	4 cut(s)	300, 484, 607, 1050
BfoI	RGCGCY	1 cut(s)	615
BfuAI	ACCTGC	1 cut(s)	637
BfuI	GTATCC	1 cut(s)	281
BglI	GCCNNNNNGGC	1 cut(s)	620
BisI	GCNGC	7 cut(s)	53, 615, 894, 908, 1050, 1053, 1056
BlsI	GCNGC	7 cut(s)	54, 616, 895, 909, 1051, 1054, 1057
Bme1390I	CCNGG	2 cut(s)	57, 1064
Bme18I	GGWCC	1 cut(s)	569
BmgT120I	GGNCC	2 cut(s)	569, 873
BmrFI	CCNGG	2 cut(s)	57, 1064
BmrI	ACTGGG	1 cut(s)	412
BmsI	GCATC	1 cut(s)	399
BmuI	ACTGGG	1 cut(s)	412
BpmI	CTGGAG	1 cut(s)	1029
BpuMI	CCSGG	1 cut(s)	57
Bsa29I	ATCGAT	2 cut(s)	45, 120
BsaAI	YACGTR	1 cut(s)	649
BsaJI	CCNNGG	5 cut(s)	176, 188, 357, 618, 694
Bsc4I	CCNNNNNNNGG	2 cut(s)	291, 870
Bse118I	RCCGGY	1 cut(s)	956
Bse1I	ACTGG	3 cut(s)	259, 296, 407
BseBI	CCWGG	1 cut(s)	1064
BseCI	ATCGAT	2 cut(s)	45, 120
BseDI	CCNNGG	5 cut(s)	176, 188, 357, 618, 694
BseGI	GGATG	5 cut(s)	40, 70, 351, 433, 864
BseLI	CCNNNNNNNGG	2 cut(s)	291, 870
BseMII	CTCAG	1 cut(s)	251
BseNI	ACTGG	3 cut(s)	259, 296, 407
BseRI	GAGGAG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	654
BseXI	GCAGC	5 cut(s)	905, 919, 1036, 1064, 1067
BseYI	CCCAGC	1 cut(s)	17
BshFI	GGCC	5 cut(s)	623, 875, 960, 1024, 1062
BshVI	ATCGAT	2 cut(s)	45, 120
BsiHKAI	GWGCWC	1 cut(s)	382
BsiSI	CCGG	3 cut(s)	56, 285, 957
BslFI	GGGAC	1 cut(s)	625
BslI	CCNNNNNNNGG	2 cut(s)	291, 870
BsmAI	GTCTC	1 cut(s)	231
BsmFI	GGGAC	1 cut(s)	625
BsnI	GGCC	5 cut(s)	623, 875, 960, 1024, 1062
Bsp1286I	GDGCHC	2 cut(s)	382, 654
Bsp143I	GATC	7 cut(s)	37, 42, 117, 480, 670, 856, 1039
BspACI	CCGC	4 cut(s)	53, 584, 615, 871
BspANI	GGCC	5 cut(s)	623, 875, 960, 1024, 1062
BspCNI	CTCAG	1 cut(s)	252
BspDI	ATCGAT	2 cut(s)	45, 120
BspMAI	CTGCAG	2 cut(s)	488, 1054
BspMI	ACCTGC	1 cut(s)	637
BspPI	GGATC	2 cut(s)	665, 1034
BspQI	GCTCTTC	2 cut(s)	78, 370
BsrFI	RCCGGY	1 cut(s)	956
BsrI	ACTGG	3 cut(s)	259, 296, 407
BssAI	RCCGGY	1 cut(s)	956
BssECI	CCNNGG	5 cut(s)	176, 188, 357, 618, 694
BssMI	GATC	7 cut(s)	37, 42, 117, 480, 670, 856, 1039
BssT1I	CCWWGG	5 cut(s)	176, 188, 357, 618, 694
Bst2UI	CCWGG	1 cut(s)	1064
Bst6I	CTCTTC	2 cut(s)	78, 370
BstBAI	YACGTR	1 cut(s)	649
BstC8I	GCNNGC	2 cut(s)	873, 1060
BstDEI	CTNAG	1 cut(s)	260
BstF5I	GGATG	5 cut(s)	40, 70, 351, 433, 864
BstH2I	RGCGCY	1 cut(s)	615
BstHHI	GCGC	1 cut(s)	614
BstKTI	GATC	7 cut(s)	40, 45, 120, 483, 673, 859, 1042
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	7 cut(s)	37, 42, 117, 480, 670, 856, 1039
BstMWI	GCNNNNNNNGC	6 cut(s)	281, 620, 629, 806, 966, 1055
BstNI	CCWGG	1 cut(s)	1064
BstSCI	CCNGG	2 cut(s)	55, 1062
BstSFI	CTRYAG	4 cut(s)	300, 484, 607, 1050
BstSLI	GKGCMC	1 cut(s)	654
BstV1I	GCAGC	5 cut(s)	905, 919, 1036, 1064, 1067
BstX2I	RGATCY	1 cut(s)	1039
BstXI	CCANNNNNNTGG	1 cut(s)	530
BstYI	RGATCY	1 cut(s)	1039
Bsu15I	ATCGAT	2 cut(s)	45, 120
BsuI	GTATCC	1 cut(s)	281
BsuRI	GGCC	5 cut(s)	623, 875, 960, 1024, 1062
BsuTUI	ATCGAT	2 cut(s)	45, 120
BtsCI	GGATG	5 cut(s)	40, 70, 351, 433, 864
BtsIMutI	CAGTG	2 cut(s)	675, 978
BveI	ACCTGC	1 cut(s)	637
Cac8I	GCNNGC	2 cut(s)	873, 1060
CfoI	GCGC	1 cut(s)	614
Cfr10I	RCCGGY	1 cut(s)	956
Cfr13I	GGNCC	2 cut(s)	569, 873
ClaI	ATCGAT	2 cut(s)	45, 120
Csp6I	GTAC	2 cut(s)	220, 247
CviAII	CATG	5 cut(s)	413, 715, 901, 997, 1012
CviQI	GTAC	2 cut(s)	220, 247
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	7 cut(s)	39, 44, 119, 482, 672, 858, 1041
DpnII	GATC	7 cut(s)	37, 42, 117, 480, 670, 856, 1039
Eam1104I	CTCTTC	2 cut(s)	78, 370
EarI	CTCTTC	2 cut(s)	78, 370
Ecl136II	GAGCTC	1 cut(s)	380
Eco130I	CCWWGG	5 cut(s)	176, 188, 357, 618, 694
Eco147I	AGGCCT	1 cut(s)	1062
Eco24I	GRGCYC	1 cut(s)	382
Eco47I	GGWCC	1 cut(s)	569
Eco53kI	GAGCTC	1 cut(s)	380
Eco57I	CTGAAG	1 cut(s)	975
EcoICRI	GAGCTC	1 cut(s)	380
EcoRI	GAATTC	1 cut(s)	502
EcoRII	CCWGG	1 cut(s)	1062
EcoT14I	CCWWGG	5 cut(s)	176, 188, 357, 618, 694
EcoT22I	ATGCAT	1 cut(s)	414
EcoT38I	GRGCYC	1 cut(s)	382
ErhI	CCWWGG	5 cut(s)	176, 188, 357, 618, 694
FaeI	CATG	5 cut(s)	416, 718, 904, 1000, 1015
FaiI	YATR	9 cut(s)	414, 420, 537, 609, 716, 902, 974, 998, 1013
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FaqI	GGGAC	1 cut(s)	625
FatI	CATG	5 cut(s)	412, 714, 900, 996, 1011
FauI	CCCGC	1 cut(s)	864
FbaI	TGATCA	1 cut(s)	37
Fnu4HI	GCNGC	7 cut(s)	53, 615, 894, 908, 1050, 1053, 1056
FokI	GGATG	5 cut(s)	47, 57, 358, 440, 851
FriOI	GRGCYC	1 cut(s)	382
Fsp4HI	GCNGC	7 cut(s)	53, 615, 894, 908, 1050, 1053, 1056
FspBI	CTAG	1 cut(s)	912
GlaI	GCGC	1 cut(s)	613
GluI	GCNGC	7 cut(s)	53, 615, 894, 908, 1050, 1053, 1056
GsaI	CCCAGC	1 cut(s)	21
GsuI	CTGGAG	1 cut(s)	1029
HaeII	RGCGCY	1 cut(s)	615
HaeIII	GGCC	5 cut(s)	623, 875, 960, 1024, 1062
HapII	CCGG	3 cut(s)	56, 285, 957
HhaI	GCGC	1 cut(s)	614
Hin1II	CATG	5 cut(s)	416, 718, 904, 1000, 1015
Hin6I	GCGC	1 cut(s)	612
HinP1I	GCGC	1 cut(s)	612
HinfI	GANTC	3 cut(s)	66, 596, 638
HpaII	CCGG	3 cut(s)	56, 285, 957
HphI	GGTGA	6 cut(s)	127, 418, 490, 594, 810, 949
Hpy166II	GTNNAC	2 cut(s)	157, 445
Hpy188I	TCNGA	6 cut(s)	42, 172, 261, 557, 637, 813
Hpy188III	TCNNGA	2 cut(s)	531, 1037
Hpy8I	GTNNAC	2 cut(s)	157, 445
HpyAV	CCTTC	5 cut(s)	106, 301, 582, 999, 1014
HpyCH4IV	ACGT	2 cut(s)	9, 648
HpyCH4V	TGCA	7 cut(s)	106, 412, 464, 486, 853, 893, 1052
HpyF10VI	GCNNNNNNNGC	6 cut(s)	281, 620, 629, 806, 966, 1055
HpyF3I	CTNAG	1 cut(s)	260
HpySE526I	ACGT	2 cut(s)	9, 648
Hsp92II	CATG	5 cut(s)	416, 718, 904, 1000, 1015
HspAI	GCGC	1 cut(s)	612
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	7 cut(s)	37, 42, 117, 480, 670, 856, 1039
LguI	GCTCTTC	2 cut(s)	78, 370
LmnI	GCTCC	2 cut(s)	385, 814
Lsp1109I	GCAGC	5 cut(s)	905, 919, 1036, 1064, 1067
LweI	GCATC	1 cut(s)	399
MaeI	CTAG	1 cut(s)	912
MaeII	ACGT	2 cut(s)	9, 648
MaeIII	GTNAC	2 cut(s)	398, 945
MalI	GATC	7 cut(s)	39, 44, 119, 482, 672, 858, 1041
MboI	GATC	7 cut(s)	37, 42, 117, 480, 670, 856, 1039
MboII	GAAGA	5 cut(s)	95, 361, 387, 591, 735
MfeI	CAATTG	1 cut(s)	144
MflI	RGATCY	1 cut(s)	1039
MhlI	GDGCHC	2 cut(s)	382, 654
MluCI	AATT	9 cut(s)	144, 182, 434, 502, 784, 823, 844, 1069, 1078
MlyI	GAGTC	1 cut(s)	647
MmeI	TCCRAC	2 cut(s)	98, 687
MnlI	CCTC	8 cut(s)	22, 25, 145, 255, 320, 461, 897, 1053
Mph1103I	ATGCAT	1 cut(s)	414
MroXI	GAANNNNTTC	1 cut(s)	9
MseI	TTAA	2 cut(s)	1008, 1084
MspA1I	CMGCKG	2 cut(s)	17, 1049
MspI	CCGG	3 cut(s)	56, 285, 957
MspR9I	CCNGG	2 cut(s)	57, 1064
MunI	CAATTG	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	1064
MwoI	GCNNNNNNNGC	6 cut(s)	281, 620, 629, 806, 966, 1055
NciI	CCSGG	1 cut(s)	57
NdeII	GATC	7 cut(s)	37, 42, 117, 480, 670, 856, 1039
NlaIII	CATG	5 cut(s)	416, 718, 904, 1000, 1015
NmuCI	GTSAC	1 cut(s)	945
NsiI	ATGCAT	1 cut(s)	414
PceI	AGGCCT	1 cut(s)	1062
PciSI	GCTCTTC	2 cut(s)	78, 370
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	2 cut(s)	66, 596
PkrI	GCNGC	7 cut(s)	54, 616, 895, 909, 1051, 1054, 1057
PleI	GAGTC	1 cut(s)	646
PpsI	GAGTC	1 cut(s)	646
Ppu21I	YACGTR	1 cut(s)	649
Psp124BI	GAGCTC	1 cut(s)	382
Psp1406I	AACGTT	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	1062
PspFI	CCCAGC	1 cut(s)	17
PspGI	CCWGG	1 cut(s)	1062
PspPI	GGNCC	2 cut(s)	569, 873
PstI	CTGCAG	2 cut(s)	488, 1054
PsuI	RGATCY	1 cut(s)	1039
PvuII	CAGCTG	2 cut(s)	17, 1049
RsaI	GTAC	2 cut(s)	221, 248
RsaNI	GTAC	2 cut(s)	220, 247
SacI	GAGCTC	1 cut(s)	382
SapI	GCTCTTC	2 cut(s)	78, 370
SaqAI	TTAA	2 cut(s)	1008, 1084
SatI	GCNGC	7 cut(s)	53, 615, 894, 908, 1050, 1053, 1056
Sau3AI	GATC	7 cut(s)	37, 42, 117, 480, 670, 856, 1039
Sau96I	GGNCC	2 cut(s)	569, 873
SchI	GAGTC	1 cut(s)	647
ScrFI	CCNGG	2 cut(s)	57, 1064
SduI	GDGCHC	2 cut(s)	382, 654
SfaNI	GCATC	1 cut(s)	399
SfcI	CTRYAG	4 cut(s)	300, 484, 607, 1050
SinI	GGWCC	1 cut(s)	569
Sse9I	AATT	9 cut(s)	144, 182, 434, 502, 784, 823, 844, 1069, 1078
SseBI	AGGCCT	1 cut(s)	1062
SsiI	CCGC	4 cut(s)	53, 584, 615, 871
SspI	AATATT	1 cut(s)	703
SspMI	CTAG	1 cut(s)	912
SstI	GAGCTC	1 cut(s)	382
StuI	AGGCCT	1 cut(s)	1062
StyD4I	CCNGG	2 cut(s)	55, 1062
StyI	CCWWGG	5 cut(s)	176, 188, 357, 618, 694
TaiI	ACGT	2 cut(s)	12, 651
TaqI	TCGA	3 cut(s)	45, 64, 120
TaqII	GACCGA	1 cut(s)	557
TasI	AATT	9 cut(s)	144, 182, 434, 502, 784, 823, 844, 1069, 1078
TauI	GCSGC	2 cut(s)	55, 617
TfiI	GAWTC	2 cut(s)	66, 596
Tru1I	TTAA	2 cut(s)	1008, 1084
Tru9I	TTAA	2 cut(s)	1008, 1084
TscAI	CASTG	2 cut(s)	682, 985
TseFI	GTSAC	1 cut(s)	945
TseI	GCWGC	5 cut(s)	893, 907, 1049, 1052, 1055
Tsp45I	GTSAC	1 cut(s)	945
TspDTI	ATGAA	8 cut(s)	96, 362, 429, 486, 576, 731, 777, 989
TspRI	CASTG	2 cut(s)	682, 985
VpaK11BI	GGWCC	1 cut(s)	569
XapI	RAATTY	4 cut(s)	434, 502, 823, 844
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	1 cut(s)	912
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.