Rorug06G0443200
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0008227
Physical Location & Seq
Forward (+)
57483869 .. 57484754
886 bp
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UTR
Exon/CDS
Intron
Rorug06G0443200.1

Sequence Viewer

Length: 435 bp
ATGTTACCTGAATTAATTGAAAATGGCCAACTGGAGCTCAGGCTGGCGTATGCCCTAGCGTCGGAGGAGGAGGATGTTGAGTCTGTGTGGGAAGTGAGGGGAGGCAAGTGGACAAAGCTCGTTCCTGATTTTGTGAGGGACGGCTTTGTTGCTGCTAATGGCGGTGGCTTGGCTTCAAAGGCTTTCCTCATAGTGTTGCTAGTGATTATCTGGACTACCCTCTCTGGAGACTGGAGAGCAGTTCAGGGCGTCGCTAGCCATGTCAGTGGTGTGCTTGCCACACAGGCTTTGCTTTATGCTGTTGGATTGCTTTCCCCAATTCCTACAGCTGCGGCGGTGAATTGGGTGCTTAAGGATGGGATTGGATACCTGAGCAAGATTATGCTCTCGAAATATGGGAGGCATTTTGATGTCAATCCGAAAGGGCGAAGTTAA

Protein Analysis

144

Amino Acids

15.55

Weight (kDa)

6.09

Isoelectric Point (pI)

26.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UVB_sens_prot PF04884 78 - 141 9.3e-15 Vitamin B6 photo-protection and homoeostasis domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 162, 332, 335
AcoI YGGCCR 1 cut(s) 25
AcyI GRCGYC 1 cut(s) 249
AfiI CCNNNNNNNGG 1 cut(s) 61
AflII CTTAAG 1 cut(s) 350
AgsI TTSAA 2 cut(s) 20, 177
AluBI AGCT 3 cut(s) 37, 118, 329
AluI AGCT 3 cut(s) 37, 118, 329
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 222
AoxI GGCC 1 cut(s) 25
ApeKI GCWGC 2 cut(s) 152, 329
AseI ATTAAT 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 349
AsuNHI GCTAGC 1 cut(s) 254
BalI TGGCCA 1 cut(s) 27
BanII GRGCYC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 39
BbvI GCAGC 2 cut(s) 139, 316
BccI CCATC 1 cut(s) 350
BceAI ACGGC 1 cut(s) 157
BciVI GTATCC 1 cut(s) 359
BcoDI GTCTC 1 cut(s) 222
BfaI CTAG 3 cut(s) 56, 200, 255
BfmI CTRYAG 1 cut(s) 324
BfrI CTTAAG 1 cut(s) 350
BfuI GTATCC 1 cut(s) 359
BglI GCCNNNNNGGC 1 cut(s) 284
BisI GCNGC 3 cut(s) 153, 330, 333
BlsI GCNGC 3 cut(s) 154, 331, 334
BmtI GCTAGC 1 cut(s) 258
BpmI CTGGAG 3 cut(s) 53, 246, 253
Bpu10I CCTNAGC 2 cut(s) 38, 371
BsaBI GATNNNNATC 1 cut(s) 414
BsaHI GRCGYC 1 cut(s) 249
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse1I ACTGG 2 cut(s) 36, 236
Bse8I GATNNNNATC 1 cut(s) 414
BseGI GGATG 2 cut(s) 79, 361
BseJI GATNNNNATC 1 cut(s) 414
BseLI CCNNNNNNNGG 1 cut(s) 61
BseMII CTCAG 2 cut(s) 52, 362
BseNI ACTGG 2 cut(s) 36, 236
BseRI GAGGAG 2 cut(s) 80, 83
BseXI GCAGC 2 cut(s) 139, 316
BshFI GGCC 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 39
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 222
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 39
BspACI CCGC 3 cut(s) 162, 332, 335
BspANI GGCC 1 cut(s) 27
BspCNI CTCAG 2 cut(s) 51, 363
BspOI GCTAGC 1 cut(s) 258
BspTI CTTAAG 1 cut(s) 350
BsrI ACTGG 2 cut(s) 36, 236
BssNI GRCGYC 1 cut(s) 249
BstACI GRCGYC 1 cut(s) 249
BstAFI CTTAAG 1 cut(s) 350
BstC8I GCNNGC 3 cut(s) 45, 256, 276
BstDEI CTNAG 2 cut(s) 38, 371
BstF5I GGATG 2 cut(s) 79, 361
BstMAI GTCTC 1 cut(s) 222
BstMWI GCNNNNNNNGC 3 cut(s) 179, 255, 284
BstSFI CTRYAG 1 cut(s) 324
BstV1I GCAGC 2 cut(s) 139, 316
BstXI CCANNNNNNTGG 1 cut(s) 266
BsuI GTATCC 1 cut(s) 359
BsuRI GGCC 1 cut(s) 27
BtsCI GGATG 2 cut(s) 79, 361
BtsIMutI CAGTG 1 cut(s) 271
Cac8I GCNNGC 3 cut(s) 45, 256, 276
CseI GACGC 2 cut(s) 48, 238
CviAII CATG 1 cut(s) 260
DdeI CTNAG 2 cut(s) 38, 371
EaeI YGGCCR 1 cut(s) 25
Ecl136II GAGCTC 1 cut(s) 37
Eco24I GRGCYC 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 37
EcoT38I GRGCYC 1 cut(s) 39
FaeI CATG 1 cut(s) 263
FaiI YATR 6 cut(s) 51, 191, 261, 297, 383, 396
FaqI GGGAC 1 cut(s) 152
FatI CATG 1 cut(s) 259
Fnu4HI GCNGC 3 cut(s) 153, 330, 333
FokI GGATG 2 cut(s) 86, 368
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 3 cut(s) 153, 330, 333
FspBI CTAG 3 cut(s) 56, 200, 255
GluI GCNGC 3 cut(s) 153, 330, 333
GsuI CTGGAG 3 cut(s) 53, 246, 253
HaeIII GGCC 1 cut(s) 27
HgaI GACGC 2 cut(s) 48, 238
Hin1I GRCGYC 1 cut(s) 249
Hin1II CATG 1 cut(s) 263
HinfI GANTC 1 cut(s) 80
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 1 cut(s) 111
Hpy188I TCNGA 2 cut(s) 64, 420
Hpy188III TCNNGA 4 cut(s) 125, 211, 225, 388
Hpy8I GTNNAC 1 cut(s) 111
Hpy99I CGWCG 2 cut(s) 64, 254
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 255, 284
HpyF3I CTNAG 2 cut(s) 38, 371
Hsp92I GRCGYC 1 cut(s) 249
Hsp92II CATG 1 cut(s) 263
LmnI GCTCC 1 cut(s) 34
Lsp1109I GCAGC 2 cut(s) 139, 316
MaeI CTAG 3 cut(s) 56, 200, 255
MaeIII GTNAC 1 cut(s) 3
MhlI GDGCHC 1 cut(s) 39
MlsI TGGCCA 1 cut(s) 27
MluCI AATT 4 cut(s) 11, 15, 318, 340
MluNI TGGCCA 1 cut(s) 27
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 2 cut(s) 42, 283
MnlI CCTC 9 cut(s) 58, 61, 64, 90, 95, 129, 197, 230, 393
Mox20I TGGCCA 1 cut(s) 27
MscI TGGCCA 1 cut(s) 27
MseI TTAA 3 cut(s) 14, 351, 433
MslI CAYNNNNRTG 2 cut(s) 264, 408
Msp20I TGGCCA 1 cut(s) 27
MspA1I CMGCKG 1 cut(s) 329
MspCI CTTAAG 1 cut(s) 350
MwoI GCNNNNNNNGC 3 cut(s) 179, 255, 284
NheI GCTAGC 1 cut(s) 254
NlaIII CATG 1 cut(s) 263
PkrI GCNGC 3 cut(s) 154, 331, 334
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PshBI ATTAAT 1 cut(s) 14
Psp124BI GAGCTC 1 cut(s) 39
PvuII CAGCTG 1 cut(s) 329
RseI CAYNNNNRTG 2 cut(s) 264, 408
SacI GAGCTC 1 cut(s) 39
SaqAI TTAA 3 cut(s) 14, 351, 433
SatI GCNGC 3 cut(s) 153, 330, 333
SchI GAGTC 1 cut(s) 89
SduI GDGCHC 1 cut(s) 39
SetI ASST 5 cut(s) 10, 39, 120, 331, 372
SfcI CTRYAG 1 cut(s) 324
SmiMI CAYNNNNRTG 2 cut(s) 264, 408
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 4 cut(s) 11, 15, 318, 340
SsiI CCGC 3 cut(s) 162, 332, 335
SspMI CTAG 3 cut(s) 56, 200, 255
SstI GAGCTC 1 cut(s) 39
TaqI TCGA 1 cut(s) 389
TasI AATT 4 cut(s) 11, 15, 318, 340
TauI GCSGC 1 cut(s) 335
Tru1I TTAA 3 cut(s) 14, 351, 433
Tru9I TTAA 3 cut(s) 14, 351, 433
TscAI CASTG 1 cut(s) 271
TseI GCWGC 2 cut(s) 152, 329
TspRI CASTG 1 cut(s) 271
Vha464I CTTAAG 1 cut(s) 350
VspI ATTAAT 1 cut(s) 14
XspI CTAG 3 cut(s) 56, 200, 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.