Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0008227

Physical Location & Seq

Genomic Coordinates Forward (+)

18969158 .. 18970479

Gene Structure 1322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g16800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGGGGAGGTGGACTTGAACAAGTCAGAGCCTTGGCAATTGCCTTTGAAAGCGAAAATGGGAGAAAAGGAGTGGTACTTTTTCTGTGTGAGAGACAGAAAGTACCCAACTGGTCTGAGGACTAACAGGGCGACCGGAGCCGGATACTGGAAGGCCACAGGGAAAGATAAGGAGATCTACAGAGCAAAATCTCTGGTTGGGATGAAGAAAACCTTGGTTTTCTACAAAGGAAGAGCCCCGAAAGGAGAAAAAAGTAACTGGGTTATGCATGAATATAGATTGGATGGTAAATTCTCTGTTCACAACCTCCCCAAAACTGCAAAGAATGAATGGGTGATTTGCAGAGTTTTTGAAAAGAATTCTGGTGGCAAGAAAACCCATATTTCTGGATTTATGACTTTGGCTTCTCTCGGAAATGAAATTGGTCCTTCTGGCCTACCACCATTGATGGATTCTTCGCCCTACAGCCCTGTCAAGGCCAAACCTGCTTCTGAGTCCCATTACGTGCCCTGCTTCTCCAACCCTGATCCCACTGATGTTCAAAGAAACCAAGGGAATATTGTTGATTACATGAACAACAATCCTCTCTTTGGTGTTTCTTCAAACTCTTCCAACTTTTTCCCAAGAATCCCACTTCCCAATTCATTCTACTCTGCTCATAATGCTCCGATTTCGACAAGTTTCAAGTTCCCCGGTTCGGATATACTGCAAGATCAGTCCATTCTGAAGGCCTTGTTAGAAAACAATGCTGCAAACATGAGGCAGCAGAGCTACAAAACAGAGAGGGAAATGGTGAGTGTGTCCCAAGAAACCGGCCTCACAAGCGATATGAACACTGAAATCTCTTCAGTCATATCCAATCTTGAAATGGCAACAAGGCCATATGGTGATCAAGATCCTCCAGCTGAAGCAGCAGGCCTGGATAATTTTTGGAATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

314

Amino Acids

35.08

Weight (kDa)

9.01

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07680 AT5G07680 AT5G61430 AT5G61430
fragaria_vesca	FvH4_5g14670 FvH4_5g14670
malus_domestica	MD06G1196100.v1.1 MD14G1203000.v1.1
prunus_persica	Prupe.5G196000_v2.0.a1
pyrus_communis	pycom06g17320 pycom14g16800
rosa_chinensis	RchiOBHm_Chr7g0181751 RchiOBHm_Chr7g0181811
rosa_laevigata	RLG00000005172
rosa_multiflora	Rmu_sc0000988.1_g000005 Rmu_sc0004898.1_g000004
rosa_roxburghii	Rroxscaffold_3G00271760
rosa_rugosa	Rorug06G0443200
rosa_samantha	Rh7AG045700 Rh7BG045000 Rh7CG046400 Rh7DG045300
rosa_wichuraiana	Rw7G003810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	493
AclWI	GGATC	2 cut(s)	521, 890
AcsI	RAATTY	2 cut(s)	290, 358
AcuI	CTGAAG	3 cut(s)	746, 831, 927
AfaI	GTAC	2 cut(s)	77, 104
AfiI	CCNNNNNNNGG	4 cut(s)	147, 475, 590, 697
AgsI	TTSAA	7 cut(s)	19, 49, 353, 542, 603, 685, 866
AjnI	CCWGG	1 cut(s)	918
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	2 cut(s)	771, 905
AluI	AGCT	2 cut(s)	771, 905
Alw26I	GTCTC	1 cut(s)	87
AlwI	GGATC	2 cut(s)	521, 890
AoxI	GGCC	7 cut(s)	153, 433, 477, 729, 814, 878, 916
ApeKI	GCWGC	3 cut(s)	749, 763, 911
ApoI	RAATTY	2 cut(s)	290, 358
AspS9I	GGNCC	1 cut(s)	425
AsuC2I	CCSGG	1 cut(s)	693
AsuHPI	GGTGA	3 cut(s)	346, 805, 899
AvaII	GGWCC	1 cut(s)	425
BaeGI	GKGCMC	1 cut(s)	510
BanII	GRGCYC	1 cut(s)	238
BbvI	GCAGC	3 cut(s)	736, 775, 923
BccI	CCATC	2 cut(s)	278, 442
BciT130I	CCWGG	1 cut(s)	920
BciVI	GTATCC	1 cut(s)	137
BclI	TGATCA	1 cut(s)	889
BcnI	CCSGG	1 cut(s)	693
BcoDI	GTCTC	1 cut(s)	87
BfmI	CTRYAG	2 cut(s)	178, 463
BfuAI	ACCTGC	1 cut(s)	493
BfuI	GTATCC	1 cut(s)	137
BglII	AGATCT	1 cut(s)	174
BisI	GCNGC	3 cut(s)	750, 764, 912
BlsI	GCNGC	3 cut(s)	751, 765, 913
Bme1390I	CCNGG	2 cut(s)	693, 920
Bme18I	GGWCC	1 cut(s)	425
BmgT120I	GGNCC	1 cut(s)	425
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	2 cut(s)	693, 920
BmrI	ACTGGG	1 cut(s)	268
BmuI	ACTGGG	1 cut(s)	268
BpmI	CTGGAG	1 cut(s)	885
BpuMI	CCSGG	1 cut(s)	693
BsaAI	YACGTR	1 cut(s)	505
BsaBI	GATNNNNATC	1 cut(s)	894
BsaJI	CCNNGG	4 cut(s)	32, 213, 550, 691
BsaWI	WCCGGW	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	4 cut(s)	147, 475, 590, 697
Bse118I	RCCGGY	1 cut(s)	812
Bse1I	ACTGG	3 cut(s)	115, 152, 263
Bse8I	GATNNNNATC	1 cut(s)	894
BseBI	CCWGG	1 cut(s)	920
BseDI	CCNNGG	4 cut(s)	32, 213, 550, 691
BseGI	GGATG	2 cut(s)	207, 289
BseJI	GATNNNNATC	1 cut(s)	894
BseLI	CCNNNNNNNGG	4 cut(s)	147, 475, 590, 697
BseMII	CTCAG	2 cut(s)	107, 483
BseNI	ACTGG	3 cut(s)	115, 152, 263
BseSI	GKGCMC	1 cut(s)	510
BseXI	GCAGC	3 cut(s)	736, 775, 923
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	7 cut(s)	155, 435, 479, 731, 816, 880, 918
BsiEI	CGRYCG	1 cut(s)	135
BsiSI	CCGG	4 cut(s)	135, 141, 693, 813
BslFI	GGGAC	2 cut(s)	481, 787
BslI	CCNNNNNNNGG	4 cut(s)	147, 475, 590, 697
BsmAI	GTCTC	1 cut(s)	87
BsmFI	GGGAC	2 cut(s)	481, 787
BsnI	GGCC	7 cut(s)	155, 435, 479, 731, 816, 880, 918
Bsp1286I	GDGCHC	2 cut(s)	238, 510
Bsp143I	GATC	5 cut(s)	174, 526, 712, 889, 895
BspANI	GGCC	7 cut(s)	155, 435, 479, 731, 816, 880, 918
BspCNI	CTCAG	2 cut(s)	108, 484
BspLI	GGNNCC	1 cut(s)	139
BspMI	ACCTGC	1 cut(s)	493
BspPI	GGATC	2 cut(s)	521, 890
BspQI	GCTCTTC	1 cut(s)	226
BsrFI	RCCGGY	1 cut(s)	812
BsrI	ACTGG	3 cut(s)	115, 152, 263
BssAI	RCCGGY	1 cut(s)	812
BssECI	CCNNGG	4 cut(s)	32, 213, 550, 691
BssMI	GATC	5 cut(s)	174, 526, 712, 889, 895
BssT1I	CCWWGG	3 cut(s)	32, 213, 550
Bst2UI	CCWGG	1 cut(s)	920
Bst6I	CTCTTC	3 cut(s)	226, 613, 850
BstBAI	YACGTR	1 cut(s)	505
BstC8I	GCNNGC	1 cut(s)	916
BstDEI	CTNAG	2 cut(s)	116, 492
BstF5I	GGATG	2 cut(s)	207, 289
BstKTI	GATC	5 cut(s)	177, 529, 715, 892, 898
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	5 cut(s)	174, 526, 712, 889, 895
BstMCI	CGRYCG	1 cut(s)	135
BstMWI	GCNNNNNNNGC	5 cut(s)	137, 485, 662, 822, 911
BstNI	CCWGG	1 cut(s)	920
BstSCI	CCNGG	2 cut(s)	691, 918
BstSFI	CTRYAG	2 cut(s)	178, 463
BstSLI	GKGCMC	1 cut(s)	510
BstV1I	GCAGC	3 cut(s)	736, 775, 923
BstX2I	RGATCY	2 cut(s)	174, 895
BstXI	CCANNNNNNTGG	1 cut(s)	386
BstYI	RGATCY	2 cut(s)	174, 895
BsuI	GTATCC	1 cut(s)	137
BsuRI	GGCC	7 cut(s)	155, 435, 479, 731, 816, 880, 918
BtsCI	GGATG	2 cut(s)	207, 289
BtsIMutI	CAGTG	2 cut(s)	531, 834
BveI	ACCTGC	1 cut(s)	493
Cac8I	GCNNGC	1 cut(s)	916
Cfr10I	RCCGGY	1 cut(s)	812
Cfr13I	GGNCC	1 cut(s)	425
Csp6I	GTAC	2 cut(s)	76, 103
CviAII	CATG	3 cut(s)	269, 571, 757
CviQI	GTAC	2 cut(s)	76, 103
DdeI	CTNAG	2 cut(s)	116, 492
DpnI	GATC	5 cut(s)	176, 528, 714, 891, 897
DpnII	GATC	5 cut(s)	174, 526, 712, 889, 895
Eam1104I	CTCTTC	3 cut(s)	226, 613, 850
EarI	CTCTTC	3 cut(s)	226, 613, 850
Eco130I	CCWWGG	3 cut(s)	32, 213, 550
Eco147I	AGGCCT	2 cut(s)	731, 918
Eco24I	GRGCYC	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	425
Eco57I	CTGAAG	3 cut(s)	746, 831, 927
EcoRI	GAATTC	1 cut(s)	358
EcoRII	CCWGG	1 cut(s)	918
EcoT14I	CCWWGG	3 cut(s)	32, 213, 550
EcoT22I	ATGCAT	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	238
ErhI	CCWWGG	3 cut(s)	32, 213, 550
FaeI	CATG	3 cut(s)	272, 574, 760
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FaqI	GGGAC	2 cut(s)	481, 787
FatI	CATG	3 cut(s)	268, 570, 756
FauNDI	CATATG	1 cut(s)	883
FbaI	TGATCA	1 cut(s)	889
Fnu4HI	GCNGC	3 cut(s)	750, 764, 912
FokI	GGATG	2 cut(s)	214, 296
FriOI	GRGCYC	1 cut(s)	238
Fsp4HI	GCNGC	3 cut(s)	750, 764, 912
GluI	GCNGC	3 cut(s)	750, 764, 912
GsuI	CTGGAG	1 cut(s)	885
HaeIII	GGCC	7 cut(s)	155, 435, 479, 731, 816, 880, 918
HapII	CCGG	4 cut(s)	135, 141, 693, 813
Hin1II	CATG	3 cut(s)	272, 574, 760
HinfI	GANTC	3 cut(s)	452, 494, 627
HpaII	CCGG	4 cut(s)	135, 141, 693, 813
HphI	GGTGA	3 cut(s)	346, 805, 899
Hpy166II	GTNNAC	2 cut(s)	13, 301
Hpy188I	TCNGA	7 cut(s)	28, 117, 413, 493, 669, 700, 726
Hpy188III	TCNNGA	3 cut(s)	387, 863, 893
Hpy8I	GTNNAC	2 cut(s)	13, 301
HpyAV	CCTTC	3 cut(s)	145, 438, 721
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	5 cut(s)	268, 320, 342, 709, 752
HpyF10VI	GCNNNNNNNGC	5 cut(s)	137, 485, 662, 822, 911
HpyF3I	CTNAG	2 cut(s)	116, 492
HpySE526I	ACGT	1 cut(s)	504
Hsp92II	CATG	3 cut(s)	272, 574, 760
Ksp22I	TGATCA	1 cut(s)	889
Kzo9I	GATC	5 cut(s)	174, 526, 712, 889, 895
LguI	GCTCTTC	1 cut(s)	226
LmnI	GCTCC	2 cut(s)	137, 670
Lsp1109I	GCAGC	3 cut(s)	736, 775, 923
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	5 cut(s)	176, 528, 714, 891, 897
MboI	GATC	5 cut(s)	174, 526, 712, 889, 895
MboII	GAAGA	6 cut(s)	217, 243, 447, 591, 600, 837
MfeI	CAATTG	1 cut(s)	38
MflI	RGATCY	2 cut(s)	174, 895
MhlI	GDGCHC	2 cut(s)	238, 510
MluCI	AATT	7 cut(s)	38, 290, 358, 420, 640, 925, 934
MlyI	GAGTC	1 cut(s)	503
MmeI	TCCRAC	2 cut(s)	543, 636
MnlI	CCTC	7 cut(s)	111, 317, 594, 753, 777, 827, 909
Mph1103I	ATGCAT	1 cut(s)	270
MseI	TTAA	1 cut(s)	940
MspA1I	CMGCKG	1 cut(s)	905
MspI	CCGG	4 cut(s)	135, 141, 693, 813
MspR9I	CCNGG	2 cut(s)	693, 920
MunI	CAATTG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	920
MwoI	GCNNNNNNNGC	5 cut(s)	137, 485, 662, 822, 911
NciI	CCSGG	1 cut(s)	693
NdeI	CATATG	1 cut(s)	883
NdeII	GATC	5 cut(s)	174, 526, 712, 889, 895
NlaIII	CATG	3 cut(s)	272, 574, 760
NlaIV	GGNNCC	1 cut(s)	139
NsiI	ATGCAT	1 cut(s)	270
PceI	AGGCCT	2 cut(s)	731, 918
PciSI	GCTCTTC	1 cut(s)	226
PfeI	GAWTC	2 cut(s)	452, 627
PkrI	GCNGC	3 cut(s)	751, 765, 913
PleI	GAGTC	1 cut(s)	502
PpsI	GAGTC	1 cut(s)	502
Ppu21I	YACGTR	1 cut(s)	505
Psp6I	CCWGG	1 cut(s)	918
PspGI	CCWGG	1 cut(s)	918
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	1 cut(s)	425
PsuI	RGATCY	2 cut(s)	174, 895
PvuII	CAGCTG	1 cut(s)	905
RsaI	GTAC	2 cut(s)	77, 104
RsaNI	GTAC	2 cut(s)	76, 103
SapI	GCTCTTC	1 cut(s)	226
SaqAI	TTAA	1 cut(s)	940
SatI	GCNGC	3 cut(s)	750, 764, 912
Sau3AI	GATC	5 cut(s)	174, 526, 712, 889, 895
Sau96I	GGNCC	1 cut(s)	425
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	2 cut(s)	693, 920
SduI	GDGCHC	2 cut(s)	238, 510
SetI	ASST	7 cut(s)	12, 215, 309, 487, 507, 773, 907
SfcI	CTRYAG	2 cut(s)	178, 463
SinI	GGWCC	1 cut(s)	425
Sse9I	AATT	7 cut(s)	38, 290, 358, 420, 640, 925, 934
SseBI	AGGCCT	2 cut(s)	731, 918
SspI	AATATT	1 cut(s)	559
StuI	AGGCCT	2 cut(s)	731, 918
StyD4I	CCNGG	2 cut(s)	691, 918
StyI	CCWWGG	3 cut(s)	32, 213, 550
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	1 cut(s)	674
TasI	AATT	7 cut(s)	38, 290, 358, 420, 640, 925, 934
TfiI	GAWTC	2 cut(s)	452, 627
Tru1I	TTAA	1 cut(s)	940
Tru9I	TTAA	1 cut(s)	940
TscAI	CASTG	2 cut(s)	538, 841
TseI	GCWGC	3 cut(s)	749, 763, 911
TspDTI	ATGAA	7 cut(s)	218, 285, 342, 432, 587, 633, 845
TspRI	CASTG	2 cut(s)	538, 841
VpaK11BI	GGWCC	1 cut(s)	425
XapI	RAATTY	2 cut(s)	290, 358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	865
Zsp2I	ATGCAT	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.