AT5G61430
NAC Family

NAC domain-containing protein 100-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008227
Physical Location & Seq
Reverse (-)
24701062 .. 24702787
1726 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G61430.2

Sequence Viewer

Length: 1011 bp
ATGGAGACTTTTTGTGGGTTTCAAAAGGAGGAAGAGCAGATGGATTTACCTCCTGGGTTCAGGTTTCATCCAACAGATGAAGAACTCATAACTCACTATCTCCATAAGAAGGTTCTTGACACCAGCTTCTCAGCTAAAGCTATCGGTGAAGTTGATTTAAACAAATCAGAGCCATGGGAGTTACCATGGATGGCAAAAATGGGTGAGAAAGAATGGTATTTTTTCTGTGTGAGAGACAGAAAGTATCCCACCGGTTTAAGAACTAACCGAGCAACTGAAGCCGGTTATTGGAAGGCGACCGGGAAGGATAAAGAGATATACCGAGGCAAATCACTTGTTGGGATGAAGAAGACACTTGTTTTCTATAGAGGAAGAGCTCCTAAAGGTCAGAAAACCAACTGGGTGATGCATGAGTACAGGCTTGAAGGAAAATTCTCTGCCCATAACTTGCCGAAAACCGCAAAGAATGAATGGGTGATATGCAGGGTGTTCCAAAAGAGTGCTGGAGGGAAGAAGATCCCGATTTCGAGTCTAATCCGAATCGGTTCACTCGGAACCGACTTTAACCCTTCGCTTTTGCCCTCTTTAACCGATTCTTCGCCTTACAACGATAAAACCAAAACAGAACCGGTCTACGTGCCCTGCTTCTCCAACCAAACGGATCAAAACCAAGGAACCACACTCAATTGCTTCAGCAGCCCTGTTCTTAACTCGATCCAAGCCGACATTTTTCACAGGATTCCACTCTATCAAACTCAGTCCCTCCAGGTTTCTATGAATCTACAGAGCCCGGTTCTCACGCAAGAACACTCAGTTCTACATGCTATGATCGAGAACAACAGAAGACAAAGTCTCAAAACGATGAGTGTCTCACAAGAAACCGGAGTTTCAACTGACATGAACACTGATATCTCATCGGATTTTGAATTTGGTAAGAGACGGTTTGATTCTCAAGAAGATCCGTCTTCCTCTACTGGACCGGTTGATCTTGAACCTTTCTGGAATTACTGA

Protein Analysis

336

Amino Acids

38.47

Weight (kDa)

8.15

Isoelectric Point (pI)

46.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 3 - 78 7.6e-28 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 633
AciI CCGC 1 cut(s) 459
AclWI GGATC 4 cut(s) 511, 669, 709, 953
AcsI RAATTY 2 cut(s) 431, 926
AcuI CTGAAG 2 cut(s) 297, 676
AfaI GTAC 1 cut(s) 416
AfiI CCNNNNNNNGG 2 cut(s) 109, 288
AgeI ACCGGT 3 cut(s) 251, 628, 979
AgsI TTSAA 5 cut(s) 23, 425, 891, 926, 992
AjnI CCWGG 2 cut(s) 52, 765
AluBI AGCT 4 cut(s) 126, 134, 140, 377
AluI AGCT 4 cut(s) 126, 134, 140, 377
Alw21I GWGCWC 1 cut(s) 379
Alw26I GTCTC 4 cut(s) 228, 857, 874, 931
AlwI GGATC 4 cut(s) 511, 669, 709, 953
ApeKI GCWGC 1 cut(s) 696
ApoI RAATTY 2 cut(s) 431, 926
AsiGI ACCGGT 3 cut(s) 251, 628, 979
Asp700I GAANNNNTTC 1 cut(s) 544
AspS9I GGNCC 1 cut(s) 977
AsuC2I CCSGG 2 cut(s) 301, 791
AsuHPI GGTGA 4 cut(s) 158, 215, 415, 487
AvaII GGWCC 1 cut(s) 977
BaeGI GKGCMC 1 cut(s) 642
BanII GRGCYC 2 cut(s) 379, 791
BbsI GAAGAC 3 cut(s) 356, 850, 957
Bbv12I GWGCWC 1 cut(s) 379
BbvI GCAGC 1 cut(s) 708
BccI CCATC 2 cut(s) 34, 184
BciT130I CCWGG 2 cut(s) 54, 767
BciVI GTATCC 1 cut(s) 255
BcnI CCSGG 2 cut(s) 301, 791
BcoDI GTCTC 4 cut(s) 228, 857, 874, 931
BfmI CTRYAG 2 cut(s) 364, 782
BfuI GTATCC 1 cut(s) 255
BisI GCNGC 1 cut(s) 697
BlsI GCNGC 1 cut(s) 698
Bme1390I CCNGG 4 cut(s) 54, 301, 767, 791
Bme18I GGWCC 1 cut(s) 977
BmgT120I GGNCC 1 cut(s) 977
BmiI GGNNCC 2 cut(s) 556, 676
BmrFI CCNGG 4 cut(s) 54, 301, 767, 791
BmrI ACTGGG 1 cut(s) 409
BmsI GCATC 1 cut(s) 396
BmuI ACTGGG 1 cut(s) 409
BpiI GAAGAC 3 cut(s) 356, 850, 957
BpmI CTGGAG 2 cut(s) 525, 749
BpuEI CTTGAG 1 cut(s) 936
BpuMI CCSGG 2 cut(s) 301, 791
BsaAI YACGTR 1 cut(s) 637
BsaJI CCNNGG 5 cut(s) 53, 173, 185, 322, 670
BsaWI WCCGGW 4 cut(s) 251, 628, 881, 979
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 288
Bse118I RCCGGY 4 cut(s) 251, 281, 628, 979
Bse1I ACTGG 2 cut(s) 404, 979
BseBI CCWGG 2 cut(s) 54, 767
BseDI CCNNGG 5 cut(s) 53, 173, 185, 322, 670
BseGI GGATG 3 cut(s) 67, 195, 348
BseLI CCNNNNNNNGG 2 cut(s) 109, 288
BseMII CTCAG 3 cut(s) 144, 770, 825
BseNI ACTGG 2 cut(s) 404, 979
BseSI GKGCMC 1 cut(s) 642
BseXI GCAGC 1 cut(s) 708
Bsh1285I CGRYCG 1 cut(s) 300
BshTI ACCGGT 3 cut(s) 251, 628, 979
BsiEI CGRYCG 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 379
BsiSI CCGG 7 cut(s) 252, 282, 300, 629, 791, 882, 980
BslFI GGGAC 1 cut(s) 745
BslI CCNNNNNNNGG 2 cut(s) 109, 288
BsmAI GTCTC 4 cut(s) 228, 857, 874, 931
BsmBI CGTCTC 1 cut(s) 931
BsmFI GGGAC 1 cut(s) 745
Bsp1286I GDGCHC 3 cut(s) 379, 642, 791
Bsp143I GATC 6 cut(s) 516, 661, 714, 828, 958, 985
Bsp19I CCATGG 2 cut(s) 173, 185
BspACI CCGC 1 cut(s) 459
BspCNI CTCAG 3 cut(s) 143, 769, 824
BspLI GGNNCC 2 cut(s) 556, 676
BspPI GGATC 4 cut(s) 511, 669, 709, 953
BspQI GCTCTTC 2 cut(s) 27, 367
BsrFI RCCGGY 4 cut(s) 251, 281, 628, 979
BsrI ACTGG 2 cut(s) 404, 979
BssAI RCCGGY 4 cut(s) 251, 281, 628, 979
BssECI CCNNGG 5 cut(s) 53, 173, 185, 322, 670
BssMI GATC 6 cut(s) 516, 661, 714, 828, 958, 985
BssT1I CCWWGG 3 cut(s) 173, 185, 670
Bst2UI CCWGG 2 cut(s) 54, 767
Bst4CI ACNGT 1 cut(s) 942
Bst6I CTCTTC 2 cut(s) 27, 367
BstBAI YACGTR 1 cut(s) 637
BstDEI CTNAG 3 cut(s) 130, 756, 811
BstDSI CCRYGG 2 cut(s) 173, 185
BstF5I GGATG 3 cut(s) 67, 195, 348
BstKTI GATC 6 cut(s) 519, 664, 717, 831, 961, 988
BstMAI GTCTC 4 cut(s) 228, 857, 874, 931
BstMBI GATC 6 cut(s) 516, 661, 714, 828, 958, 985
BstMCI CGRYCG 1 cut(s) 300
BstMWI GCNNNNNNNGC 2 cut(s) 278, 696
BstNI CCWGG 2 cut(s) 54, 767
BstNSI RCATGY 1 cut(s) 824
BstSCI CCNGG 4 cut(s) 52, 299, 765, 789
BstSFI CTRYAG 2 cut(s) 364, 782
BstSLI GKGCMC 1 cut(s) 642
BstV1I GCAGC 1 cut(s) 708
BstV2I GAAGAC 3 cut(s) 356, 850, 957
BstX2I RGATCY 2 cut(s) 516, 958
BstYI RGATCY 2 cut(s) 516, 958
BsuI GTATCC 1 cut(s) 255
BtgI CCRYGG 2 cut(s) 173, 185
BtsCI GGATG 3 cut(s) 67, 195, 348
BtsIMutI CAGTG 1 cut(s) 903
Cfr10I RCCGGY 4 cut(s) 251, 281, 628, 979
Cfr13I GGNCC 1 cut(s) 977
Csp6I GTAC 1 cut(s) 415
CspAI ACCGGT 3 cut(s) 251, 628, 979
CviAII CATG 5 cut(s) 174, 186, 410, 821, 898
CviQI GTAC 1 cut(s) 415
DdeI CTNAG 3 cut(s) 130, 756, 811
DpnI GATC 6 cut(s) 518, 663, 716, 830, 960, 987
DpnII GATC 6 cut(s) 516, 661, 714, 828, 958, 985
DraI TTTAAA 1 cut(s) 159
Eam1104I CTCTTC 2 cut(s) 27, 367
EarI CTCTTC 2 cut(s) 27, 367
Ecl136II GAGCTC 1 cut(s) 377
Eco130I CCWWGG 3 cut(s) 173, 185, 670
Eco24I GRGCYC 2 cut(s) 379, 791
Eco32I GATATC 1 cut(s) 910
Eco47I GGWCC 1 cut(s) 977
Eco53kI GAGCTC 1 cut(s) 377
Eco57I CTGAAG 2 cut(s) 297, 676
EcoICRI GAGCTC 1 cut(s) 377
EcoRII CCWGG 2 cut(s) 52, 765
EcoRV GATATC 1 cut(s) 910
EcoT14I CCWWGG 3 cut(s) 173, 185, 670
EcoT22I ATGCAT 1 cut(s) 411
EcoT38I GRGCYC 2 cut(s) 379, 791
ErhI CCWWGG 3 cut(s) 173, 185, 670
Esp3I CGTCTC 1 cut(s) 931
FaeI CATG 5 cut(s) 177, 189, 413, 824, 901
FaqI GGGAC 1 cut(s) 745
FatI CATG 5 cut(s) 173, 185, 409, 820, 897
FblI GTMKAC 1 cut(s) 633
Fnu4HI GCNGC 1 cut(s) 697
FokI GGATG 3 cut(s) 54, 202, 355
FriOI GRGCYC 2 cut(s) 379, 791
Fsp4HI GCNGC 1 cut(s) 697
GluI GCNGC 1 cut(s) 697
GsuI CTGGAG 2 cut(s) 525, 749
HapII CCGG 7 cut(s) 252, 282, 300, 629, 791, 882, 980
Hin1II CATG 5 cut(s) 177, 189, 413, 824, 901
HinfI GANTC 6 cut(s) 529, 540, 593, 739, 778, 947
HpaII CCGG 7 cut(s) 252, 282, 300, 629, 791, 882, 980
HphI GGTGA 4 cut(s) 158, 215, 415, 487
Hpy166II GTNNAC 2 cut(s) 548, 634
Hpy188I TCNGA 5 cut(s) 169, 390, 539, 554, 919
Hpy188III TCNNGA 6 cut(s) 116, 520, 832, 953, 989, 1000
Hpy8I GTNNAC 2 cut(s) 548, 634
HpyAV CCTTC 5 cut(s) 103, 286, 298, 419, 579
HpyCH4III ACNGT 1 cut(s) 942
HpyCH4IV ACGT 1 cut(s) 636
HpyCH4V TGCA 2 cut(s) 409, 483
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 696
HpyF3I CTNAG 3 cut(s) 130, 756, 811
HpySE526I ACGT 1 cut(s) 636
Hsp92II CATG 5 cut(s) 177, 189, 413, 824, 901
Kzo9I GATC 6 cut(s) 516, 661, 714, 828, 958, 985
LguI GCTCTTC 2 cut(s) 27, 367
LmnI GCTCC 1 cut(s) 382
Lsp1109I GCAGC 1 cut(s) 708
LweI GCATC 1 cut(s) 396
MaeII ACGT 1 cut(s) 636
MaeIII GTNAC 1 cut(s) 180
MalI GATC 6 cut(s) 518, 663, 716, 830, 960, 987
MboI GATC 6 cut(s) 516, 661, 714, 828, 958, 985
MfeI CAATTG 1 cut(s) 685
MflI RGATCY 2 cut(s) 516, 958
MhlI GDGCHC 3 cut(s) 379, 642, 791
MluCI AATT 4 cut(s) 431, 685, 926, 1003
MlyI GAGTC 1 cut(s) 538
MmeI TCCRAC 2 cut(s) 95, 675
MnlI CCTC 8 cut(s) 22, 60, 317, 362, 500, 592, 773, 979
Mph1103I ATGCAT 1 cut(s) 411
MroXI GAANNNNTTC 1 cut(s) 544
MseI TTAA 5 cut(s) 158, 257, 564, 587, 708
MspI CCGG 7 cut(s) 252, 282, 300, 629, 791, 882, 980
MspR9I CCNGG 4 cut(s) 54, 301, 767, 791
MunI CAATTG 1 cut(s) 685
MvaI CCWGG 2 cut(s) 54, 767
MwoI GCNNNNNNNGC 2 cut(s) 278, 696
NciI CCSGG 2 cut(s) 301, 791
NcoI CCATGG 2 cut(s) 173, 185
NdeII GATC 6 cut(s) 516, 661, 714, 828, 958, 985
NlaIII CATG 5 cut(s) 177, 189, 413, 824, 901
NlaIV GGNNCC 2 cut(s) 556, 676
NsiI ATGCAT 1 cut(s) 411
NspI RCATGY 1 cut(s) 824
PciSI GCTCTTC 2 cut(s) 27, 367
PdmI GAANNNNTTC 1 cut(s) 544
PfeI GAWTC 5 cut(s) 540, 593, 739, 778, 947
PflFI GACNNNGTC 1 cut(s) 849
PinAI ACCGGT 3 cut(s) 251, 628, 979
PkrI GCNGC 1 cut(s) 698
PleI GAGTC 1 cut(s) 537
PpsI GAGTC 1 cut(s) 537
Ppu21I YACGTR 1 cut(s) 637
Psp124BI GAGCTC 1 cut(s) 379
Psp6I CCWGG 2 cut(s) 52, 765
PspGI CCWGG 2 cut(s) 52, 765
PspN4I GGNNCC 2 cut(s) 556, 676
PspPI GGNCC 1 cut(s) 977
PsuI RGATCY 2 cut(s) 516, 958
PsyI GACNNNGTC 1 cut(s) 849
RsaI GTAC 1 cut(s) 416
RsaNI GTAC 1 cut(s) 415
SacI GAGCTC 1 cut(s) 379
SapI GCTCTTC 2 cut(s) 27, 367
SaqAI TTAA 5 cut(s) 158, 257, 564, 587, 708
SatI GCNGC 1 cut(s) 697
Sau3AI GATC 6 cut(s) 516, 661, 714, 828, 958, 985
Sau96I GGNCC 1 cut(s) 977
SchI GAGTC 1 cut(s) 538
ScrFI CCNGG 4 cut(s) 54, 301, 767, 791
SduI GDGCHC 3 cut(s) 379, 642, 791
SfaNI GCATC 1 cut(s) 396
SfcI CTRYAG 2 cut(s) 364, 782
SinI GGWCC 1 cut(s) 977
SmlI CTYRAG 1 cut(s) 951
SmoI CTYRAG 1 cut(s) 951
Sse9I AATT 4 cut(s) 431, 685, 926, 1003
SsiI CCGC 1 cut(s) 459
SstI GAGCTC 1 cut(s) 379
StyD4I CCNGG 4 cut(s) 52, 299, 765, 789
StyI CCWWGG 3 cut(s) 173, 185, 670
TaaI ACNGT 1 cut(s) 942
TaiI ACGT 1 cut(s) 639
TaqI TCGA 3 cut(s) 527, 713, 831
TasI AATT 4 cut(s) 431, 685, 926, 1003
TatI WGTACW 1 cut(s) 414
TfiI GAWTC 5 cut(s) 540, 593, 739, 778, 947
Tru1I TTAA 5 cut(s) 158, 257, 564, 587, 708
Tru9I TTAA 5 cut(s) 158, 257, 564, 587, 708
TscAI CASTG 1 cut(s) 910
TseI GCWGC 1 cut(s) 696
TspDTI ATGAA 6 cut(s) 56, 93, 359, 483, 791, 914
TspGWI ACGGA 2 cut(s) 674, 951
TspRI CASTG 1 cut(s) 910
Tth111I GACNNNGTC 1 cut(s) 849
VpaK11BI GGWCC 1 cut(s) 977
XapI RAATTY 2 cut(s) 431, 926
XceI RCATGY 1 cut(s) 824
XcmI CCANNNNNNNNNTGG 1 cut(s) 500
XmiI GTMKAC 1 cut(s) 633
XmnI GAANNNNTTC 1 cut(s) 544
Zsp2I ATGCAT 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.