Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007742

Physical Location & Seq

Genomic Coordinates Reverse (-)

2457347 .. 2458502

Gene Structure 1156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G07730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCTGAAGATGAAGATCATTATTGTGAACAACACCTGATTGGTCCATTGGATCACAGTTCGTCAATGGTTGTCATCAGAGAATCGCCAATTTTCGCCAAGGACGATGGCGTTGTGTTCCCGCCGATCTACCATGAGAATCTCCATGTCGCTTCTTCCGTCTATGGAGTCGATAGATACCTCGAATCTCCGTCGGAATCCTCGTCTCCGTCATCTTCGTCGAGACGCTCTGGTTCATCTTCTTCTTTTTCGTTGTTTCCTTCTGATTCAGATGGACAAACGTCACTGACTGCGTTTGAATTTGACCGGAAGGCTCCGTCGGAAACTGAAGAAAAATCTCTGCCGTTGTTGTTAAGCGGTGAATCTCCACCGTCCGATTCGGGGGAACAGTCGCCATTTGAACAGATATCTCCGCGATTACCTTCTGAACAAGGCGGCAAGTCTCCACCATGCGATTCAGATGGGAAATTACTGGGGAAACCATTGAATCGTGAAGTTGATGTCCTCCACGATTGGTGGGAGCCTCTTCTTGTACGTTTATACTCCAAGTTGAAGAATTTGTTGACCTGGTTCTCAAAGACTATCCGATCATTTTATCCAGTTCTTGCCATTGCGATTTGGTGGTGGATGCGTGTACGAGCTCCTCGGAAACGCGTTAAAGGAGAAAACATGGATCATCTTCGAGATGTGATCAAAGAGAGAGACGAGAGGATAGTTCAGCTTTTGCATCAACTTGCTCAAATGAATGAGTTACTGTTAAAGCACCACAAGGACATTGTATCAAGAAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

264

Amino Acids

30.09

Weight (kDa)

5.94

Isoelectric Point (pI)

69.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07730 AT5G61360
fragaria_vesca	FvH4_5g14530
malus_domestica	MD06G1197700.v1.1 MD14G1205100.v1.1
prunus_persica	Prupe.5G198500_v2.0.a1
pyrus_communis	pycom06g17470 pycom14g16950
rosa_chinensis	RchiOBHm_Chr7g0182121
rosa_laevigata	RLG00000005149
rosa_multiflora	Rmu_co8282759.1_g000001 Rmu_sc0003511.1_g000005 Rmu_sc0040499.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271490 Rroxscaffold_5G00360990
rosa_rugosa	Rorug06G0445800
rosa_samantha	Rh4BG277900 Rh7AG048500 Rh7BG048300 Rh7CG049800 Rh7DG047700
rosa_wichuraiana	Rw0G021040 Rw2G026110 Rw7G003960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	415, 654
AciI	CCGC	4 cut(s)	122, 357, 413, 435
AclWI	GGATC	2 cut(s)	60, 681
AcsI	RAATTY	2 cut(s)	299, 556
AcuI	CTGAAG	2 cut(s)	27, 348
AfaI	GTAC	2 cut(s)	534, 636
AfiI	CCNNNNNNNGG	1 cut(s)	381
AflIII	ACRYGT	1 cut(s)	652
AgsI	TTSAA	4 cut(s)	299, 401, 487, 553
AjnI	CCWGG	1 cut(s)	566
AluBI	AGCT	2 cut(s)	641, 721
AluI	AGCT	2 cut(s)	641, 721
Alw21I	GWGCWC	1 cut(s)	643
Alw26I	GTCTC	4 cut(s)	210, 217, 447, 696
AlwI	GGATC	2 cut(s)	60, 681
ApoI	RAATTY	2 cut(s)	299, 556
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	371
AvaII	GGWCC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	643
Bbv12I	GWGCWC	1 cut(s)	643
BccI	CCATC	3 cut(s)	101, 266, 455
BceAI	ACGGC	1 cut(s)	328
BciT130I	CCWGG	1 cut(s)	568
BclI	TGATCA	1 cut(s)	690
BcoDI	GTCTC	4 cut(s)	210, 217, 447, 696
BisI	GCNGC	1 cut(s)	436
BlsI	GCNGC	1 cut(s)	437
Bme1390I	CCNGG	1 cut(s)	568
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	2 cut(s)	315, 522
BmrFI	CCNGG	1 cut(s)	568
BmrI	ACTGGG	1 cut(s)	482
BmsI	GCATC	2 cut(s)	618, 736
BmuI	ACTGGG	1 cut(s)	482
BoxI	GACNNNNGTC	1 cut(s)	280
BsaBI	GATNNNNATC	1 cut(s)	15
BsaJI	CCNNGG	2 cut(s)	99, 644
BsaWI	WCCGGW	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	1 cut(s)	381
Bse1I	ACTGG	2 cut(s)	477, 599
Bse3DI	GCAATG	1 cut(s)	609
Bse8I	GATNNNNATC	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	568
BseDI	CCNNGG	2 cut(s)	99, 644
BseGI	GGATG	1 cut(s)	633
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	381
BseMI	GCAATG	1 cut(s)	609
BseNI	ACTGG	2 cut(s)	477, 599
BseRI	GAGGAG	1 cut(s)	633
Bsh1236I	CGCG	2 cut(s)	415, 654
BsiHKAI	GWGCWC	1 cut(s)	643
BsiSI	CCGG	1 cut(s)	307
BslI	CCNNNNNNNGG	1 cut(s)	381
BsmAI	GTCTC	4 cut(s)	210, 217, 447, 696
BsmBI	CGTCTC	3 cut(s)	210, 217, 696
Bsp1286I	GDGCHC	1 cut(s)	643
Bsp143I	GATC	6 cut(s)	16, 52, 126, 587, 673, 690
BspACI	CCGC	4 cut(s)	122, 357, 413, 435
BspFNI	CGCG	2 cut(s)	415, 654
BspLI	GGNNCC	2 cut(s)	315, 522
BspPI	GGATC	2 cut(s)	60, 681
BsrDI	GCAATG	1 cut(s)	609
BsrI	ACTGG	2 cut(s)	477, 599
BssECI	CCNNGG	2 cut(s)	99, 644
BssMI	GATC	6 cut(s)	16, 52, 126, 587, 673, 690
BssT1I	CCWWGG	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	568
Bst4CI	ACNGT	4 cut(s)	59, 372, 390, 756
Bst6I	CTCTTC	1 cut(s)	531
BstF5I	GGATG	1 cut(s)	633
BstFNI	CGCG	2 cut(s)	415, 654
BstKTI	GATC	6 cut(s)	19, 55, 129, 590, 676, 693
BstMAI	GTCTC	4 cut(s)	210, 217, 447, 696
BstMBI	GATC	6 cut(s)	16, 52, 126, 587, 673, 690
BstNI	CCWGG	1 cut(s)	568
BstPAI	GACNNNNGTC	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	566
BstUI	CGCG	2 cut(s)	415, 654
BtsCI	GGATG	1 cut(s)	633
BtsIMutI	CAGTG	1 cut(s)	284
Cfr13I	GGNCC	1 cut(s)	44
CseI	GACGC	1 cut(s)	234
CsiI	ACCWGGT	1 cut(s)	566
Csp6I	GTAC	2 cut(s)	533, 635
CviAII	CATG	4 cut(s)	134, 146, 450, 670
CviJI	RGCY	5 cut(s)	5, 314, 523, 641, 721
CviKI_1	RGCY	5 cut(s)	5, 314, 523, 641, 721
CviQI	GTAC	2 cut(s)	533, 635
DpnI	GATC	6 cut(s)	18, 54, 128, 589, 675, 692
DpnII	GATC	6 cut(s)	16, 52, 126, 587, 673, 690
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Ecl136II	GAGCTC	1 cut(s)	641
Eco130I	CCWWGG	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	643
Eco32I	GATATC	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	44
Eco53kI	GAGCTC	1 cut(s)	641
Eco57I	CTGAAG	2 cut(s)	27, 348
EcoICRI	GAGCTC	1 cut(s)	641
EcoRII	CCWGG	1 cut(s)	566
EcoRV	GATATC	1 cut(s)	408
EcoT14I	CCWWGG	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	643
ErhI	CCWWGG	1 cut(s)	99
Esp3I	CGTCTC	3 cut(s)	210, 217, 696
FaeI	CATG	4 cut(s)	137, 149, 453, 673
FaiI	YATR	6 cut(s)	135, 147, 165, 451, 541, 671
FatI	CATG	4 cut(s)	133, 145, 449, 669
FauI	CCCGC	1 cut(s)	129
FbaI	TGATCA	1 cut(s)	690
Fnu4HI	GCNGC	1 cut(s)	436
FokI	GGATG	1 cut(s)	640
FriOI	GRGCYC	1 cut(s)	643
Fsp4HI	GCNGC	1 cut(s)	436
GluI	GCNGC	1 cut(s)	436
HapII	CCGG	1 cut(s)	307
HgaI	GACGC	1 cut(s)	234
Hin1II	CATG	4 cut(s)	137, 149, 453, 673
HincII	GTYRAC	1 cut(s)	564
HindII	GTYRAC	1 cut(s)	564
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	1 cut(s)	371
Hpy166II	GTNNAC	3 cut(s)	29, 564, 635
Hpy188III	TCNNGA	4 cut(s)	222, 491, 683, 783
Hpy8I	GTNNAC	3 cut(s)	29, 564, 635
Hpy99I	CGWCG	3 cut(s)	196, 223, 322
HpyAV	CCTTC	3 cut(s)	270, 304, 432
HpyCH4III	ACNGT	4 cut(s)	59, 372, 390, 756
HpyCH4IV	ACGT	2 cut(s)	281, 535
HpyCH4V	TGCA	1 cut(s)	727
HpySE526I	ACGT	2 cut(s)	281, 535
Hsp92II	CATG	4 cut(s)	137, 149, 453, 673
Ksp22I	TGATCA	1 cut(s)	690
Kzo9I	GATC	6 cut(s)	16, 52, 126, 587, 673, 690
LmnI	GCTCC	3 cut(s)	319, 520, 646
LpnPI	CCDG	7 cut(s)	50, 216, 320, 458, 553, 580, 612
LweI	GCATC	2 cut(s)	618, 736
MabI	ACCWGGT	1 cut(s)	566
MaeII	ACGT	2 cut(s)	281, 535
MaeIII	GTNAC	2 cut(s)	282, 750
MalI	GATC	6 cut(s)	18, 54, 128, 589, 675, 692
MboI	GATC	6 cut(s)	16, 52, 126, 587, 673, 690
MhlI	GDGCHC	1 cut(s)	643
MluCI	AATT	4 cut(s)	90, 299, 467, 556
MluI	ACGCGT	1 cut(s)	652
MlyI	GAGTC	1 cut(s)	177
MmeI	TCCRAC	2 cut(s)	174, 300
MnlI	CCTC	6 cut(s)	191, 211, 515, 534, 654, 702
MseI	TTAA	3 cut(s)	353, 657, 758
MslI	CAYNNNNRTG	1 cut(s)	24
MspI	CCGG	1 cut(s)	307
MspR9I	CCNGG	1 cut(s)	568
MvaI	CCWGG	1 cut(s)	568
MvnI	CGCG	2 cut(s)	415, 654
NdeII	GATC	6 cut(s)	16, 52, 126, 587, 673, 690
NlaIII	CATG	4 cut(s)	137, 149, 453, 673
NlaIV	GGNNCC	2 cut(s)	315, 522
NmuCI	GTSAC	1 cut(s)	282
PcsI	WCGNNNNNNNCGW	3 cut(s)	102, 156, 200
PfeI	GAWTC	9 cut(s)	83, 139, 185, 197, 266, 362, 377, 455, 487
PkrI	GCNGC	1 cut(s)	437
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
PshAI	GACNNNNGTC	1 cut(s)	280
Psp124BI	GAGCTC	1 cut(s)	643
Psp6I	CCWGG	1 cut(s)	566
PspGI	CCWGG	1 cut(s)	566
PspN4I	GGNNCC	2 cut(s)	315, 522
PspPI	GGNCC	1 cut(s)	44
RsaI	GTAC	2 cut(s)	534, 636
RsaNI	GTAC	2 cut(s)	533, 635
RseI	CAYNNNNRTG	1 cut(s)	24
SacI	GAGCTC	1 cut(s)	643
SaqAI	TTAA	3 cut(s)	353, 657, 758
SatI	GCNGC	1 cut(s)	436
Sau3AI	GATC	6 cut(s)	16, 52, 126, 587, 673, 690
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	1 cut(s)	177
ScrFI	CCNGG	1 cut(s)	568
SduI	GDGCHC	1 cut(s)	643
SetI	ASST	8 cut(s)	39, 183, 284, 424, 538, 569, 643, 723
SexAI	ACCWGGT	1 cut(s)	566
SfaNI	GCATC	2 cut(s)	618, 736
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	24
Sse9I	AATT	4 cut(s)	90, 299, 467, 556
SsiI	CCGC	4 cut(s)	122, 357, 413, 435
SstI	GAGCTC	1 cut(s)	643
StyD4I	CCNGG	1 cut(s)	566
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	4 cut(s)	59, 372, 390, 756
TaiI	ACGT	2 cut(s)	284, 538
TaqI	TCGA	4 cut(s)	171, 183, 221, 682
TasI	AATT	4 cut(s)	90, 299, 467, 556
TauI	GCSGC	1 cut(s)	438
TfiI	GAWTC	9 cut(s)	83, 139, 185, 197, 266, 362, 377, 455, 487
Tru1I	TTAA	3 cut(s)	353, 657, 758
Tru9I	TTAA	3 cut(s)	353, 657, 758
TscAI	CASTG	1 cut(s)	291
TseFI	GTSAC	1 cut(s)	282
Tsp45I	GTSAC	1 cut(s)	282
TspDTI	ATGAA	3 cut(s)	27, 225, 758
TspGWI	ACGGA	4 cut(s)	148, 180, 198, 306
TspRI	CASTG	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	2 cut(s)	299, 556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.