Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007742

Physical Location & Seq

Genomic Coordinates Forward (+)

19066811 .. 19067689

Gene Structure 879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g16950.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCGGGCGAGCACTTCGATTCAGCGGGATTCGAATTCAAACGCATCCCCAAAACCCAACACAAAGAATGGTCCATGGTCGCCATCAGAGACACTCCCTCACCCAATACTGACTCCTCCGTCTTCCCTCCAGTCAATCACGAAAATCTCCACCATCCATCACAACCCGATCAAAAGCATCCGGACCCGTTATCGCCACCGCCGTCGTCTCCGTCGCTGTCATCTTCTTCGTCGTCGTCGCTGTCGTCATTCTCACCGTCCGATTCCGATGAATCGGGCCCGCTTTCGCCGCTTCCGTTCGATACCCTGGTCCGAAAACCTGGTGAATTCACCACCTGGGTAGGAATTGGCTTTGGGTTACTGCGTTCCAAGGTTTCTGCTATGGCTTCCTCATCTGGGTTCGATAAAGTTTGGAGCTTTGCCTCCGGCGCGGGAATGGCGGCTGTGGTGTTCGTGTTATGGTCCTTGTTCTTGCGGGCTCGGCAAAGGCGGTATCGGAATCATTTGAAATTCATCCGCAAAGAGAAAGACGAGAAAATCAATAAACTGCTGCACCAAATCGCGCAGATGAACGAAGTTCTGGTAGCTCGGCATAAAGCTCTCGCTTCAAAACTGGCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

22.89

Weight (kDa)

9.69

Isoelectric Point (pI)

53.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07730 AT5G61360
fragaria_vesca	FvH4_5g14530
malus_domestica	MD06G1197700.v1.1 MD14G1205100.v1.1
prunus_persica	Prupe.5G198500_v2.0.a1
pyrus_communis	pycom06g17470 pycom14g16950
rosa_chinensis	RchiOBHm_Chr7g0182121
rosa_laevigata	RLG00000005149
rosa_multiflora	Rmu_co8282759.1_g000001 Rmu_sc0003511.1_g000005 Rmu_sc0040499.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271490 Rroxscaffold_5G00360990
rosa_rugosa	Rorug06G0445800
rosa_samantha	Rh4BG277900 Rh7AG048500 Rh7BG048300 Rh7CG049800 Rh7DG047700
rosa_wichuraiana	Rw0G021040 Rw2G026110 Rw7G003960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
AccII	CGCG	2 cut(s)	431, 563
AccIII	TCCGGA	1 cut(s)	181
AcsI	RAATTY	3 cut(s)	35, 326, 509
AfiI	CCNNNNNNNGG	1 cut(s)	396
AgsI	TTSAA	3 cut(s)	40, 508, 609
AjnI	CCWGG	3 cut(s)	306, 319, 335
AluBI	AGCT	3 cut(s)	417, 587, 599
AluI	AGCT	3 cut(s)	417, 587, 599
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	2 cut(s)	84, 213
Aor13HI	TCCGGA	1 cut(s)	181
AoxI	GGCC	1 cut(s)	277
ApaI	GGGCCC	1 cut(s)	281
ApeKI	GCWGC	1 cut(s)	550
ApoI	RAATTY	3 cut(s)	35, 326, 509
AspLEI	GCGC	2 cut(s)	431, 565
AspS9I	GGNCC	6 cut(s)	72, 184, 277, 278, 310, 462
AsuHPI	GGTGA	4 cut(s)	93, 246, 322, 335
AsuII	TTCGAA	1 cut(s)	33
AvaII	GGWCC	4 cut(s)	72, 184, 310, 462
BaeGI	GKGCMC	1 cut(s)	281
BaeI	ACNNNNGTAYC	2 cut(s)	294, 327
BanII	GRGCYC	2 cut(s)	281, 481
BbsI	GAAGAC	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	537
BccI	CCATC	3 cut(s)	92, 162, 166
BceAI	ACGGC	1 cut(s)	187
BciT130I	CCWGG	3 cut(s)	308, 321, 337
BcoDI	GTCTC	2 cut(s)	84, 213
BisI	GCNGC	3 cut(s)	290, 441, 551
BlsI	GCNGC	3 cut(s)	291, 442, 552
Bme1390I	CCNGG	3 cut(s)	308, 321, 337
Bme18I	GGWCC	4 cut(s)	72, 184, 310, 462
BmgT120I	GGNCC	6 cut(s)	72, 184, 277, 278, 310, 462
BmiI	GGNNCC	2 cut(s)	186, 279
BmrFI	CCNGG	3 cut(s)	308, 321, 337
BmsI	GCATC	2 cut(s)	54, 187
BpiI	GAAGAC	1 cut(s)	115
BpmI	CTGGAG	1 cut(s)	114
Bpu14I	TTCGAA	1 cut(s)	33
BsaJI	CCNNGG	4 cut(s)	75, 306, 336, 369
BsaWI	WCCGGW	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	1 cut(s)	396
Bse1I	ACTGG	2 cut(s)	131, 618
BseAI	TCCGGA	1 cut(s)	181
BseBI	CCWGG	3 cut(s)	308, 321, 337
BseDI	CCNNGG	4 cut(s)	75, 306, 336, 369
BseGI	GGATG	4 cut(s)	45, 154, 178, 513
BseLI	CCNNNNNNNGG	1 cut(s)	396
BseNI	ACTGG	2 cut(s)	131, 618
BseRI	GAGGAG	1 cut(s)	106
BseSI	GKGCMC	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	537
BsgI	GTGCAG	1 cut(s)	536
Bsh1236I	CGCG	2 cut(s)	431, 563
BshFI	GGCC	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	2 cut(s)	182, 426
BslI	CCNNNNNNNGG	1 cut(s)	396
BsmAI	GTCTC	2 cut(s)	84, 213
BsmBI	CGTCTC	1 cut(s)	213
BsnI	GGCC	1 cut(s)	279
Bsp119I	TTCGAA	1 cut(s)	33
Bsp120I	GGGCCC	1 cut(s)	277
Bsp1286I	GDGCHC	3 cut(s)	15, 281, 481
Bsp13I	TCCGGA	1 cut(s)	181
Bsp143I	GATC	1 cut(s)	169
Bsp19I	CCATGG	1 cut(s)	75
BspANI	GGCC	1 cut(s)	279
BspEI	TCCGGA	1 cut(s)	181
BspFNI	CGCG	2 cut(s)	431, 563
BspLI	GGNNCC	2 cut(s)	186, 279
BspT104I	TTCGAA	1 cut(s)	33
BsrI	ACTGG	2 cut(s)	131, 618
BssECI	CCNNGG	4 cut(s)	75, 306, 336, 369
BssMI	GATC	1 cut(s)	169
BssT1I	CCWWGG	2 cut(s)	75, 369
Bst2UI	CCWGG	3 cut(s)	308, 321, 337
Bst4CI	ACNGT	1 cut(s)	258
BstBI	TTCGAA	1 cut(s)	33
BstC8I	GCNNGC	4 cut(s)	7, 11, 281, 477
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	4 cut(s)	45, 154, 178, 513
BstFNI	CGCG	2 cut(s)	431, 563
BstHHI	GCGC	2 cut(s)	431, 565
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	2 cut(s)	84, 213
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	4 cut(s)	289, 428, 437, 481
BstNI	CCWGG	3 cut(s)	308, 321, 337
BstSCI	CCNGG	3 cut(s)	306, 319, 335
BstSLI	GKGCMC	1 cut(s)	281
BstUI	CGCG	2 cut(s)	431, 563
BstV1I	GCAGC	1 cut(s)	537
BstV2I	GAAGAC	1 cut(s)	115
BsuRI	GGCC	1 cut(s)	279
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	4 cut(s)	45, 154, 178, 513
Cac8I	GCNNGC	4 cut(s)	7, 11, 281, 477
CfoI	GCGC	2 cut(s)	431, 565
Cfr13I	GGNCC	6 cut(s)	72, 184, 277, 278, 310, 462
CsiI	ACCWGGT	1 cut(s)	319
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	9 cut(s)	279, 351, 386, 417, 443, 479, 587, 599, 617
CviKI_1	RGCY	9 cut(s)	279, 351, 386, 417, 443, 479, 587, 599, 617
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
Eco130I	CCWWGG	2 cut(s)	75, 369
Eco24I	GRGCYC	2 cut(s)	281, 481
Eco47I	GGWCC	4 cut(s)	72, 184, 310, 462
EcoRI	GAATTC	2 cut(s)	35, 326
EcoRII	CCWGG	3 cut(s)	306, 319, 335
EcoT14I	CCWWGG	2 cut(s)	75, 369
EcoT38I	GRGCYC	2 cut(s)	281, 481
ErhI	CCWWGG	2 cut(s)	75, 369
Esp3I	CGTCTC	1 cut(s)	213
FaeI	CATG	1 cut(s)	79
FaiI	YATR	4 cut(s)	77, 383, 460, 594
FatI	CATG	1 cut(s)	75
FauI	CCCGC	4 cut(s)	19, 288, 424, 468
Fnu4HI	GCNGC	3 cut(s)	290, 441, 551
FokI	GGATG	4 cut(s)	32, 141, 165, 500
FriOI	GRGCYC	2 cut(s)	281, 481
Fsp4HI	GCNGC	3 cut(s)	290, 441, 551
GlaI	GCGC	2 cut(s)	430, 564
GluI	GCNGC	3 cut(s)	290, 441, 551
GsuI	CTGGAG	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	279
HapII	CCGG	2 cut(s)	182, 426
HhaI	GCGC	2 cut(s)	431, 565
Hin1II	CATG	1 cut(s)	79
Hin6I	GCGC	2 cut(s)	429, 563
HinP1I	GCGC	2 cut(s)	429, 563
HinfI	GANTC	6 cut(s)	20, 30, 113, 263, 272, 499
HpaII	CCGG	2 cut(s)	182, 426
HphI	GGTGA	4 cut(s)	93, 246, 322, 335
Hpy188I	TCNGA	5 cut(s)	89, 262, 268, 314, 498
Hpy188III	TCNNGA	2 cut(s)	140, 182
Hpy99I	CGWCG	5 cut(s)	208, 217, 235, 238, 241
HpyCH4III	ACNGT	1 cut(s)	258
HpyCH4V	TGCA	1 cut(s)	553
HpyF10VI	GCNNNNNNNGC	4 cut(s)	289, 428, 437, 481
Hsp92II	CATG	1 cut(s)	79
HspAI	GCGC	2 cut(s)	429, 563
Kpn2I	TCCGGA	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	414
Lsp1109I	GCAGC	1 cut(s)	537
LweI	GCATC	2 cut(s)	54, 187
MabI	ACCWGGT	1 cut(s)	319
MaeIII	GTNAC	1 cut(s)	357
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	3 cut(s)	115, 216, 219
MhlI	GDGCHC	3 cut(s)	15, 281, 481
MluCI	AATT	5 cut(s)	35, 326, 345, 509, 619
MlyI	GAGTC	1 cut(s)	107
MnlI	CCTC	5 cut(s)	109, 127, 138, 400, 433
MroI	TCCGGA	1 cut(s)	181
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	2 cut(s)	182, 426
MspR9I	CCNGG	3 cut(s)	308, 321, 337
MvaI	CCWGG	3 cut(s)	308, 321, 337
MvnI	CGCG	2 cut(s)	431, 563
MwoI	GCNNNNNNNGC	4 cut(s)	289, 428, 437, 481
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	2 cut(s)	186, 279
NmeAIII	GCCGAG	2 cut(s)	460, 568
NspV	TTCGAA	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	3 cut(s)	200, 242, 293
PfeI	GAWTC	5 cut(s)	20, 30, 263, 272, 499
PkrI	GCNGC	3 cut(s)	291, 442, 552
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
Psp6I	CCWGG	3 cut(s)	306, 319, 335
PspGI	CCWGG	3 cut(s)	306, 319, 335
PspN4I	GGNNCC	2 cut(s)	186, 279
PspOMI	GGGCCC	1 cut(s)	277
PspPI	GGNCC	6 cut(s)	72, 184, 277, 278, 310, 462
SatI	GCNGC	3 cut(s)	290, 441, 551
Sau3AI	GATC	1 cut(s)	169
Sau96I	GGNCC	6 cut(s)	72, 184, 277, 278, 310, 462
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	3 cut(s)	308, 321, 337
SduI	GDGCHC	3 cut(s)	15, 281, 481
SetI	ASST	6 cut(s)	322, 338, 375, 419, 589, 601
SexAI	ACCWGGT	1 cut(s)	319
SfaNI	GCATC	2 cut(s)	54, 187
SfuI	TTCGAA	1 cut(s)	33
SinI	GGWCC	4 cut(s)	72, 184, 310, 462
Sse9I	AATT	5 cut(s)	35, 326, 345, 509, 619
StyD4I	CCNGG	3 cut(s)	306, 319, 335
StyI	CCWWGG	2 cut(s)	75, 369
TaaI	ACNGT	1 cut(s)	258
TaqI	TCGA	4 cut(s)	18, 33, 300, 402
TasI	AATT	5 cut(s)	35, 326, 345, 509, 619
TauI	GCSGC	2 cut(s)	292, 443
TfiI	GAWTC	5 cut(s)	20, 30, 263, 272, 499
TseI	GCWGC	1 cut(s)	550
TspDTI	ATGAA	3 cut(s)	285, 502, 584
TspGWI	ACGGA	3 cut(s)	109, 201, 285
VpaK11BI	GGWCC	4 cut(s)	72, 184, 310, 462
XapI	RAATTY	3 cut(s)	35, 326, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.