Rmu_co8282759.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8282759.1
OG0007742
Physical Location & Seq
Reverse (-)
363 .. 767
405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8282759.1_g000001.1.cds

Sequence Viewer

Length: 405 bp
atggtagccatcagagactctaactgctctgtcttccctccaattaatcacgaaaacctttacctcccaacctccccatcactatcgtcttcttcctcctcgtcgctctcgtctttgtggccgtccgattccaacgaatcgggcccagtttcgcagaagaagccggatacccaggtcgaaaaatgcagcgaattgaggagcttggtgggttttggagttgggttagtgcgttctaaggttttggggattggttcgttgattgggtgggaaaaagtttggtgctttgtttttggggcaggcattgtggcggtggtgtttgtggtgtggtcgttttacttgcgagtgaggcagacgcggtatcggaagctttccaatttgattatcaaacaaaaagatgaggtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.81

Weight (kDa)

9.33

Isoelectric Point (pI)

45.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 355
AciI CCGC 2 cut(s) 308, 355
AcoI YGGCCR 1 cut(s) 119
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 2 cut(s) 201, 367
AluI AGCT 2 cut(s) 201, 367
Alw26I GTCTC 1 cut(s) 9
AoxI GGCC 2 cut(s) 119, 142
ApaI GGGCCC 1 cut(s) 146
ApeKI GCWGC 1 cut(s) 186
AseI ATTAAT 1 cut(s) 45
AspS9I GGNCC 2 cut(s) 142, 143
BaeGI GKGCMC 1 cut(s) 146
BaeI ACNNNNGTAYC 2 cut(s) 159, 192
BanII GRGCYC 1 cut(s) 146
BbsI GAAGAC 2 cut(s) 25, 81
BbvI GCAGC 1 cut(s) 198
BccI CCATC 2 cut(s) 17, 85
BceAI ACGGC 1 cut(s) 106
BciT130I CCWGG 1 cut(s) 173
BciVI GTATCC 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 9
BfuI GTATCC 1 cut(s) 160
BisI GCNGC 1 cut(s) 187
BlsI GCNGC 1 cut(s) 188
Bme1390I CCNGG 1 cut(s) 173
BmgT120I GGNCC 2 cut(s) 142, 143
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 173
BmrI ACTGGG 1 cut(s) 140
BmuI ACTGGG 1 cut(s) 140
BpiI GAAGAC 2 cut(s) 25, 81
BsaJI CCNNGG 1 cut(s) 171
Bse1I ACTGG 1 cut(s) 146
BseBI CCWGG 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 146
BseRI GAGGAG 2 cut(s) 88, 211
BseSI GKGCMC 1 cut(s) 146
BseXI GCAGC 1 cut(s) 198
Bsh1236I CGCG 1 cut(s) 355
BshFI GGCC 2 cut(s) 121, 144
BsiSI CCGG 1 cut(s) 164
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 2 cut(s) 121, 144
Bsp120I GGGCCC 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 146
BspACI CCGC 2 cut(s) 308, 355
BspANI GGCC 2 cut(s) 121, 144
BspFNI CGCG 1 cut(s) 355
BspLI GGNNCC 1 cut(s) 144
BsrI ACTGG 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 298
BstDEI CTNAG 1 cut(s) 234
BstFNI CGCG 1 cut(s) 355
BstMAI GTCTC 1 cut(s) 9
BstMWI GCNNNNNNNGC 2 cut(s) 160, 346
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 171
BstSLI GKGCMC 1 cut(s) 146
BstUI CGCG 1 cut(s) 355
BstV1I GCAGC 1 cut(s) 198
BstV2I GAAGAC 2 cut(s) 25, 81
BsuI GTATCC 1 cut(s) 160
BsuRI GGCC 2 cut(s) 121, 144
Cac8I GCNNGC 1 cut(s) 298
Cfr13I GGNCC 2 cut(s) 142, 143
CseI GACGC 1 cut(s) 361
CviJI RGCY 6 cut(s) 8, 121, 144, 163, 201, 367
CviKI_1 RGCY 6 cut(s) 8, 121, 144, 163, 201, 367
DdeI CTNAG 1 cut(s) 234
EaeI YGGCCR 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 146
Fnu4HI GCNGC 1 cut(s) 187
FriOI GRGCYC 1 cut(s) 146
Fsp4HI GCNGC 1 cut(s) 187
GluI GCNGC 1 cut(s) 187
HaeIII GGCC 2 cut(s) 121, 144
HapII CCGG 1 cut(s) 164
HgaI GACGC 1 cut(s) 361
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 3 cut(s) 17, 128, 137
HpaII CCGG 1 cut(s) 164
Hpy188I TCNGA 3 cut(s) 14, 127, 363
Hpy188III TCNNGA 1 cut(s) 50
Hpy99I CGWCG 1 cut(s) 106
HpyCH4V TGCA 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 2 cut(s) 160, 346
HpyF3I CTNAG 1 cut(s) 234
LmnI GCTCC 1 cut(s) 198
LpnPI CCDG 5 cut(s) 158, 159, 177, 185, 282
Lsp1109I GCAGC 1 cut(s) 198
MboII GAAGA 4 cut(s) 25, 81, 84, 169
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 3 cut(s) 42, 191, 373
MlyI GAGTC 1 cut(s) 11
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 8 cut(s) 48, 74, 82, 106, 109, 189, 339, 391
MseI TTAA 1 cut(s) 45
MspI CCGG 1 cut(s) 164
MspR9I CCNGG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 173
MvnI CGCG 1 cut(s) 355
MwoI GCNNNNNNNGC 2 cut(s) 160, 346
NlaIV GGNNCC 1 cut(s) 144
PcsI WCGNNNNNNNCGW 1 cut(s) 107
PfeI GAWTC 2 cut(s) 128, 137
PkrI GCNGC 1 cut(s) 188
PleI GAGTC 1 cut(s) 11
PpsI GAGTC 1 cut(s) 11
PshBI ATTAAT 1 cut(s) 45
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 144
PspOMI GGGCCC 1 cut(s) 142
PspPI GGNCC 2 cut(s) 142, 143
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 1 cut(s) 187
Sau96I GGNCC 2 cut(s) 142, 143
SchI GAGTC 1 cut(s) 11
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 1 cut(s) 146
SetI ASST 8 cut(s) 60, 66, 74, 177, 203, 240, 369, 402
Sse9I AATT 3 cut(s) 42, 191, 373
SsiI CCGC 2 cut(s) 308, 355
StyD4I CCNGG 1 cut(s) 171
TaqI TCGA 1 cut(s) 177
TasI AATT 3 cut(s) 42, 191, 373
TfiI GAWTC 2 cut(s) 128, 137
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TseI GCWGC 1 cut(s) 186
VspI ATTAAT 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.