Rh7CG049800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0007742
Physical Location & Seq
Forward (+)
3622927 .. 3628296
5370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG049800.1

Sequence Viewer

Length: 540 bp
ATGGTGGGCGACCAATTCGATACAGAAGGCTTGGAATTGAAGGAATGGTCAATGGTAGCCATCAGAGACTCCAACTCCTCCGTTTTCCCTCCAATTAATCACGAAAACCTCCACCTCCCGACCTCCCCATCACTGTCGTCTTCTTCCTCCTCCTCGCTCTCGTCGTTTTCGCCGTCCGATTCCGACGAATCGGGCCCGGTTTCTCCGAAGAAGCCCGATCCCCAGGTCGGAAAATGGGGCGGAATGAGGAGCTGGGTGGGTTTTGGGGTTGGGTTACTGCGTTGTAAGGTTTTGGGGATTGGTTCGTTGATTGGGTGGGAGAAAGTTTGGTGCTTTGGTTCTGGGGCGGGCATTGTGGCGGTGGTGTTTATGGTGTGGTCGTTTTACTTACGAGTGAGGCGGAGGCGGTATCGGAAGCGTTCCGATTTGATTATCAAAGAGAAAGATGAGAAAATTAATAAGCTGCTGCACCAAATCGCGCAAATGAATGAAGTACTGGTGGCTCGGCATAGAGCTCTGGCTTCCAAACTGGCTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

19.89

Weight (kDa)

9.65

Isoelectric Point (pI)

48.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 479
AciI CCGC 5 cut(s) 240, 347, 359, 400, 406
AclWI GGATC 1 cut(s) 212
AfaI GTAC 1 cut(s) 495
AfiI CCNNNNNNNGG 1 cut(s) 227
AgsI TTSAA 1 cut(s) 40
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 3 cut(s) 252, 463, 515
AluI AGCT 3 cut(s) 252, 463, 515
Alw21I GWGCWC 1 cut(s) 517
Alw26I GTCTC 1 cut(s) 60
AlwI GGATC 1 cut(s) 212
AoxI GGCC 1 cut(s) 193
ApaI GGGCCC 1 cut(s) 197
ApeKI GCWGC 2 cut(s) 463, 466
AseI ATTAAT 2 cut(s) 96, 456
AspLEI GCGC 1 cut(s) 481
AspS9I GGNCC 2 cut(s) 193, 194
AsuC2I CCSGG 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 197
BanII GRGCYC 2 cut(s) 197, 517
BbsI GAAGAC 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 517
BbvI GCAGC 2 cut(s) 450, 453
BccI CCATC 2 cut(s) 68, 136
BceAI ACGGC 1 cut(s) 157
BciT130I CCWGG 1 cut(s) 224
BcnI CCSGG 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 60
BisI GCNGC 2 cut(s) 464, 467
BlsI GCNGC 2 cut(s) 465, 468
BmcAI AGTACT 1 cut(s) 495
Bme1390I CCNGG 2 cut(s) 197, 224
BmgT120I GGNCC 2 cut(s) 193, 194
BmiI GGNNCC 1 cut(s) 195
BmrFI CCNGG 2 cut(s) 197, 224
BpiI GAAGAC 1 cut(s) 132
BpuMI CCSGG 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 222
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse1I ACTGG 2 cut(s) 501, 534
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 227
BseNI ACTGG 2 cut(s) 501, 534
BseRI GAGGAG 4 cut(s) 67, 139, 142, 262
BseSI GKGCMC 1 cut(s) 197
BseXI GCAGC 2 cut(s) 450, 453
BseYI CCCAGC 1 cut(s) 252
BsgI GTGCAG 1 cut(s) 452
Bsh1236I CGCG 1 cut(s) 479
BshFI GGCC 1 cut(s) 195
BsiHKAI GWGCWC 1 cut(s) 517
BsiSI CCGG 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 227
BsmAI GTCTC 1 cut(s) 60
BsnI GGCC 1 cut(s) 195
Bsp120I GGGCCC 1 cut(s) 193
Bsp1286I GDGCHC 2 cut(s) 197, 517
Bsp143I GATC 1 cut(s) 217
BspACI CCGC 5 cut(s) 240, 347, 359, 400, 406
BspANI GGCC 1 cut(s) 195
BspFNI CGCG 1 cut(s) 479
BspLI GGNNCC 1 cut(s) 195
BspPI GGATC 1 cut(s) 212
BsrI ACTGG 2 cut(s) 501, 534
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 1 cut(s) 217
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 349
BstFNI CGCG 1 cut(s) 479
BstHHI GCGC 1 cut(s) 481
BstKTI GATC 1 cut(s) 220
BstMAI GTCTC 1 cut(s) 60
BstMBI GATC 1 cut(s) 217
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 2 cut(s) 195, 222
BstSLI GKGCMC 1 cut(s) 197
BstUI CGCG 1 cut(s) 479
BstV1I GCAGC 2 cut(s) 450, 453
BstV2I GAAGAC 1 cut(s) 132
BsuRI GGCC 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 349
CfoI GCGC 1 cut(s) 481
Cfr13I GGNCC 2 cut(s) 193, 194
Csp6I GTAC 1 cut(s) 494
CviQI GTAC 1 cut(s) 494
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
EciI GGCGGA 2 cut(s) 255, 415
Ecl136II GAGCTC 1 cut(s) 515
Eco24I GRGCYC 2 cut(s) 197, 517
Eco53kI GAGCTC 1 cut(s) 515
EcoICRI GAGCTC 1 cut(s) 515
EcoRII CCWGG 1 cut(s) 222
EcoT38I GRGCYC 2 cut(s) 197, 517
FaiI YATR 2 cut(s) 371, 510
FauI CCCGC 1 cut(s) 340
Fnu4HI GCNGC 2 cut(s) 464, 467
FriOI GRGCYC 2 cut(s) 197, 517
Fsp4HI GCNGC 2 cut(s) 464, 467
GlaI GCGC 1 cut(s) 480
GluI GCNGC 2 cut(s) 464, 467
GsaI CCCAGC 1 cut(s) 256
HaeIII GGCC 1 cut(s) 195
HapII CCGG 1 cut(s) 197
HhaI GCGC 1 cut(s) 481
Hin6I GCGC 1 cut(s) 479
HinP1I GCGC 1 cut(s) 479
HinfI GANTC 3 cut(s) 68, 179, 188
HpaII CCGG 1 cut(s) 197
Hpy188I TCNGA 7 cut(s) 65, 178, 184, 207, 230, 414, 424
Hpy188III TCNNGA 2 cut(s) 101, 118
Hpy99I CGWCG 2 cut(s) 166, 188
HpyAV CCTTC 2 cut(s) 20, 34
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4V TGCA 1 cut(s) 469
HspAI GCGC 1 cut(s) 479
Kzo9I GATC 1 cut(s) 217
LmnI GCTCC 1 cut(s) 249
LpnPI CCDG 8 cut(s) 209, 210, 236, 238, 327, 482, 503, 515
Lsp1109I GCAGC 2 cut(s) 450, 453
MaeIII GTNAC 1 cut(s) 273
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 3 cut(s) 132, 135, 220
MhlI GDGCHC 2 cut(s) 197, 517
MluCI AATT 5 cut(s) 14, 35, 93, 453, 535
MlyI GAGTC 1 cut(s) 62
MmeI TCCRAC 3 cut(s) 96, 207, 208
MseI TTAA 2 cut(s) 96, 456
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 2 cut(s) 197, 224
MvaI CCWGG 1 cut(s) 224
MvnI CGCG 1 cut(s) 479
NciI CCSGG 1 cut(s) 197
NdeII GATC 1 cut(s) 217
NlaIV GGNNCC 1 cut(s) 195
NmeAIII GCCGAG 1 cut(s) 484
PcsI WCGNNNNNNNCGW 2 cut(s) 161, 170
PfeI GAWTC 2 cut(s) 179, 188
PkrI GCNGC 2 cut(s) 465, 468
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
PshBI ATTAAT 2 cut(s) 96, 456
Psp124BI GAGCTC 1 cut(s) 517
Psp6I CCWGG 1 cut(s) 222
PspFI CCCAGC 1 cut(s) 252
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 195
PspOMI GGGCCC 1 cut(s) 193
PspPI GGNCC 2 cut(s) 193, 194
RsaI GTAC 1 cut(s) 495
RsaNI GTAC 1 cut(s) 494
SacI GAGCTC 1 cut(s) 517
SaqAI TTAA 2 cut(s) 96, 456
SatI GCNGC 2 cut(s) 464, 467
Sau3AI GATC 1 cut(s) 217
Sau96I GGNCC 2 cut(s) 193, 194
ScaI AGTACT 1 cut(s) 495
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 2 cut(s) 197, 224
SduI GDGCHC 2 cut(s) 197, 517
SetI ASST 8 cut(s) 111, 117, 125, 228, 254, 291, 465, 517
Sse9I AATT 5 cut(s) 14, 35, 93, 453, 535
SsiI CCGC 5 cut(s) 240, 347, 359, 400, 406
SstI GAGCTC 1 cut(s) 517
StyD4I CCNGG 2 cut(s) 195, 222
TaaI ACNGT 1 cut(s) 135
TaqI TCGA 1 cut(s) 18
TasI AATT 5 cut(s) 14, 35, 93, 453, 535
TatI WGTACW 1 cut(s) 493
TfiI GAWTC 2 cut(s) 179, 188
Tru1I TTAA 2 cut(s) 96, 456
Tru9I TTAA 2 cut(s) 96, 456
TscAI CASTG 1 cut(s) 138
TseI GCWGC 2 cut(s) 463, 466
TspDTI ATGAA 2 cut(s) 500, 504
TspGWI ACGGA 1 cut(s) 70
TspRI CASTG 1 cut(s) 138
VspI ATTAAT 2 cut(s) 96, 456
ZrmI AGTACT 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.