Rh7BG048300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0007742
Physical Location & Seq
Forward (+)
3172374 .. 3177400
5027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG048300.1

Sequence Viewer

Length: 573 bp
ATGGTGGGCGACCAATTCGATCCAGAAGGCTTGGAATTGAAGCACTGGGAGAAAATCTCCAAAACCCAATTCAAGGAATGGTCAATGGTAGCCATCAGAGACTCCAACTCCTCCGTTTTCCCTCCAATTAATCACGAAAACCTCCACCTCCCGGCCTCCCCATCACTGTCGTCTTCTTCCTCCTCGTCGCTGTCGTCGTTTTCGCCGTCCGATTCCGACGAATCGGGCCCGGTTTCTCCGAAGAAGCCCGATACCCAGGTCGGAAAATGCGGCGGAATGAGGAGCTGGGTGGGTTTTGGAGTTGGGTTACTGCGTTGTAAGGTTTTGGGGATTGGTTCGTTGATTGGGTGGGAGAAAGTTTGGTGCTTTGGTTCTGGGGCGGGCATTGTGGCGGTGGTGTTTATGGTGTGGTCGTTTTACTTGCGAGTGAGGCGGAGGCGGTATCGGAAGCGTTCCGATTTGATTATCAAAGAGAAAGATGAGAAAATTAATAAGCTGCTGCACCAAATCGCGCAAATGAATGAAGTACTGGTGGCTCGGCATAGAGCTCTGGCTTCCAAACTGGCTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

21.19

Weight (kDa)

9.68

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 512
AciI CCGC 6 cut(s) 270, 273, 380, 392, 433, 439
AclWI GGATC 1 cut(s) 14
AfaI GTAC 1 cut(s) 528
AfiI CCNNNNNNNGG 2 cut(s) 73, 151
AgsI TTSAA 2 cut(s) 40, 73
AjnI CCWGG 1 cut(s) 255
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AluBI AGCT 3 cut(s) 285, 496, 548
AluI AGCT 3 cut(s) 285, 496, 548
Alw21I GWGCWC 1 cut(s) 550
Alw26I GTCTC 1 cut(s) 93
AlwI GGATC 1 cut(s) 14
AoxI GGCC 2 cut(s) 153, 226
ApaI GGGCCC 1 cut(s) 230
ApeKI GCWGC 2 cut(s) 496, 499
AseI ATTAAT 2 cut(s) 129, 489
AspLEI GCGC 1 cut(s) 514
AspS9I GGNCC 2 cut(s) 226, 227
AsuC2I CCSGG 2 cut(s) 152, 230
BaeGI GKGCMC 1 cut(s) 230
BaeI ACNNNNGTAYC 2 cut(s) 243, 276
BanII GRGCYC 2 cut(s) 230, 550
BbsI GAAGAC 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 550
BbvI GCAGC 2 cut(s) 483, 486
BccI CCATC 2 cut(s) 101, 169
BceAI ACGGC 1 cut(s) 190
BciT130I CCWGG 1 cut(s) 257
BcnI CCSGG 2 cut(s) 152, 230
BcoDI GTCTC 1 cut(s) 93
BisI GCNGC 3 cut(s) 271, 497, 500
BlsI GCNGC 3 cut(s) 272, 498, 501
BmcAI AGTACT 1 cut(s) 528
Bme1390I CCNGG 3 cut(s) 152, 230, 257
BmgT120I GGNCC 2 cut(s) 226, 227
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 3 cut(s) 152, 230, 257
BmrI ACTGGG 1 cut(s) 55
BmuI ACTGGG 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 165
BplI GAGNNNNNCTC 2 cut(s) 41, 73
BpuMI CCSGG 2 cut(s) 152, 230
BsaJI CCNNGG 1 cut(s) 255
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 151
Bse1I ACTGG 3 cut(s) 50, 534, 567
BseBI CCWGG 1 cut(s) 257
BseDI CCNNGG 1 cut(s) 255
BseLI CCNNNNNNNGG 2 cut(s) 73, 151
BseNI ACTGG 3 cut(s) 50, 534, 567
BseRI GAGGAG 3 cut(s) 100, 172, 295
BseSI GKGCMC 1 cut(s) 230
BseXI GCAGC 2 cut(s) 483, 486
BseYI CCCAGC 1 cut(s) 285
BsgI GTGCAG 1 cut(s) 485
Bsh1236I CGCG 1 cut(s) 512
BshFI GGCC 2 cut(s) 155, 228
BsiHKAI GWGCWC 1 cut(s) 550
BsiSI CCGG 2 cut(s) 152, 230
BslI CCNNNNNNNGG 2 cut(s) 73, 151
BsmAI GTCTC 1 cut(s) 93
BsnI GGCC 2 cut(s) 155, 228
Bsp120I GGGCCC 1 cut(s) 226
Bsp1286I GDGCHC 2 cut(s) 230, 550
Bsp143I GATC 1 cut(s) 19
BspACI CCGC 6 cut(s) 270, 273, 380, 392, 433, 439
BspANI GGCC 2 cut(s) 155, 228
BspFNI CGCG 1 cut(s) 512
BspLI GGNNCC 1 cut(s) 228
BspPI GGATC 1 cut(s) 14
BsrI ACTGG 3 cut(s) 50, 534, 567
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 1 cut(s) 19
Bst2UI CCWGG 1 cut(s) 257
Bst4CI ACNGT 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 382
BstFNI CGCG 1 cut(s) 512
BstHHI GCGC 1 cut(s) 514
BstKTI GATC 1 cut(s) 22
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 1 cut(s) 19
BstMWI GCNNNNNNNGC 1 cut(s) 430
BstNI CCWGG 1 cut(s) 257
BstSCI CCNGG 3 cut(s) 150, 228, 255
BstSLI GKGCMC 1 cut(s) 230
BstUI CGCG 1 cut(s) 512
BstV1I GCAGC 2 cut(s) 483, 486
BstV2I GAAGAC 1 cut(s) 165
BsuRI GGCC 2 cut(s) 155, 228
BtsIMutI CAGTG 2 cut(s) 43, 164
Cac8I GCNNGC 1 cut(s) 382
CfoI GCGC 1 cut(s) 514
Cfr13I GGNCC 2 cut(s) 226, 227
Csp6I GTAC 1 cut(s) 527
CviQI GTAC 1 cut(s) 527
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
EciI GGCGGA 2 cut(s) 288, 448
Ecl136II GAGCTC 1 cut(s) 548
Eco24I GRGCYC 2 cut(s) 230, 550
Eco53kI GAGCTC 1 cut(s) 548
EcoICRI GAGCTC 1 cut(s) 548
EcoRII CCWGG 1 cut(s) 255
EcoT38I GRGCYC 2 cut(s) 230, 550
FaiI YATR 2 cut(s) 404, 543
FauI CCCGC 1 cut(s) 373
Fnu4HI GCNGC 3 cut(s) 271, 497, 500
FriOI GRGCYC 2 cut(s) 230, 550
Fsp4HI GCNGC 3 cut(s) 271, 497, 500
GlaI GCGC 1 cut(s) 513
GluI GCNGC 3 cut(s) 271, 497, 500
GsaI CCCAGC 1 cut(s) 289
HaeIII GGCC 2 cut(s) 155, 228
HapII CCGG 2 cut(s) 152, 230
HhaI GCGC 1 cut(s) 514
Hin6I GCGC 1 cut(s) 512
HinP1I GCGC 1 cut(s) 512
HinfI GANTC 3 cut(s) 101, 212, 221
HpaII CCGG 2 cut(s) 152, 230
Hpy188I TCNGA 7 cut(s) 98, 211, 217, 240, 263, 447, 457
Hpy188III TCNNGA 2 cut(s) 23, 134
Hpy99I CGWCG 3 cut(s) 190, 199, 221
HpyAV CCTTC 1 cut(s) 20
HpyCH4III ACNGT 1 cut(s) 168
HpyCH4V TGCA 1 cut(s) 502
HpyF10VI GCNNNNNNNGC 1 cut(s) 430
HspAI GCGC 1 cut(s) 512
Kzo9I GATC 1 cut(s) 19
LmnI GCTCC 1 cut(s) 282
Lsp1109I GCAGC 2 cut(s) 483, 486
MaeIII GTNAC 1 cut(s) 306
MalI GATC 1 cut(s) 21
MboI GATC 1 cut(s) 19
MboII GAAGA 3 cut(s) 165, 168, 253
MhlI GDGCHC 2 cut(s) 230, 550
MluCI AATT 6 cut(s) 14, 35, 68, 126, 486, 568
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 3 cut(s) 129, 240, 241
MseI TTAA 2 cut(s) 129, 489
MspI CCGG 2 cut(s) 152, 230
MspR9I CCNGG 3 cut(s) 152, 230, 257
MvaI CCWGG 1 cut(s) 257
MvnI CGCG 1 cut(s) 512
MwoI GCNNNNNNNGC 1 cut(s) 430
NciI CCSGG 2 cut(s) 152, 230
NdeII GATC 1 cut(s) 19
NlaIV GGNNCC 1 cut(s) 228
NmeAIII GCCGAG 1 cut(s) 517
PcsI WCGNNNNNNNCGW 3 cut(s) 191, 194, 203
PfeI GAWTC 2 cut(s) 212, 221
PkrI GCNGC 3 cut(s) 272, 498, 501
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PshBI ATTAAT 2 cut(s) 129, 489
Psp124BI GAGCTC 1 cut(s) 550
Psp6I CCWGG 1 cut(s) 255
PspFI CCCAGC 1 cut(s) 285
PspGI CCWGG 1 cut(s) 255
PspN4I GGNNCC 1 cut(s) 228
PspOMI GGGCCC 1 cut(s) 226
PspPI GGNCC 2 cut(s) 226, 227
RsaI GTAC 1 cut(s) 528
RsaNI GTAC 1 cut(s) 527
SacI GAGCTC 1 cut(s) 550
SaqAI TTAA 2 cut(s) 129, 489
SatI GCNGC 3 cut(s) 271, 497, 500
Sau3AI GATC 1 cut(s) 19
Sau96I GGNCC 2 cut(s) 226, 227
ScaI AGTACT 1 cut(s) 528
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 3 cut(s) 152, 230, 257
SduI GDGCHC 2 cut(s) 230, 550
SetI ASST 7 cut(s) 144, 150, 261, 287, 324, 498, 550
Sse9I AATT 6 cut(s) 14, 35, 68, 126, 486, 568
SsiI CCGC 6 cut(s) 270, 273, 380, 392, 433, 439
SstI GAGCTC 1 cut(s) 550
StyD4I CCNGG 3 cut(s) 150, 228, 255
TaaI ACNGT 1 cut(s) 168
TaqI TCGA 1 cut(s) 18
TasI AATT 6 cut(s) 14, 35, 68, 126, 486, 568
TatI WGTACW 1 cut(s) 526
TauI GCSGC 1 cut(s) 273
TfiI GAWTC 2 cut(s) 212, 221
Tru1I TTAA 2 cut(s) 129, 489
Tru9I TTAA 2 cut(s) 129, 489
TscAI CASTG 2 cut(s) 50, 171
TseI GCWGC 2 cut(s) 496, 499
TspDTI ATGAA 2 cut(s) 533, 537
TspGWI ACGGA 1 cut(s) 103
TspRI CASTG 2 cut(s) 50, 171
VspI ATTAAT 2 cut(s) 129, 489
ZrmI AGTACT 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.