Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0007742

Physical Location & Seq

Genomic Coordinates Forward (+)

3317360 .. 3318326

Gene Structure 967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G003960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGTGGGCGACCAATTCGATCCAGAAGGCTTGGAATTGAAGCACTGGGACAAAATCTCCAAAACCCAATTCGAGGAATGGTCAATGGTAGCCATCAGAGACTCCAACTCCTCCGTTTTCCCTCCAATTAATCACGAAAACCTCCACCTCCCGACCTCCCCATCACTGTCGTCTTCTTCCTCCTCCTCTCTCTCGTCGTTTTCGCCGTCCGATTCCGACGAATCGGGCCCGGTTTCGCCGAAGAAGCCCGATCCCCAGTTTGGTGCTTTGGTTCTGGGGCGGGTTGTGGCGGTGGTGTTTATGGTGTGGTCGTTTTACTTGCGAGTGAGGCGGAGGCGGTATCGGAAGCGTTCCGATTTGATTATCAAACAGAAAGATGAGAAAATTAATAAGCTGCTGCACCAAATCGCGCAAATGAATGAAGTACTGGTGGCTCGGCATAGAGTTCTGGCTTCCAAACTGGCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.72

Weight (kDa)

9.64

Isoelectric Point (pI)

57.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07730 AT5G61360
fragaria_vesca	FvH4_5g14530
malus_domestica	MD06G1197700.v1.1 MD14G1205100.v1.1
prunus_persica	Prupe.5G198500_v2.0.a1
pyrus_communis	pycom06g17470 pycom14g16950
rosa_chinensis	RchiOBHm_Chr7g0182121
rosa_laevigata	RLG00000005149
rosa_multiflora	Rmu_co8282759.1_g000001 Rmu_sc0003511.1_g000005 Rmu_sc0040499.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271490 Rroxscaffold_5G00360990
rosa_rugosa	Rorug06G0445800
rosa_samantha	Rh4BG277900 Rh7AG048500 Rh7BG048300 Rh7CG049800 Rh7DG047700
rosa_wichuraiana	Rw0G021040 Rw2G026110 Rw7G003960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	410
AciI	CCGC	4 cut(s)	280, 290, 331, 337
AclWI	GGATC	2 cut(s)	14, 245
AfaI	GTAC	1 cut(s)	426
AfiI	CCNNNNNNNGG	2 cut(s)	73, 260
AgsI	TTSAA	1 cut(s)	40
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
AluBI	AGCT	1 cut(s)	394
AluI	AGCT	1 cut(s)	394
Alw26I	GTCTC	1 cut(s)	93
AlwI	GGATC	2 cut(s)	14, 245
AoxI	GGCC	1 cut(s)	226
ApaI	GGGCCC	1 cut(s)	230
ApeKI	GCWGC	2 cut(s)	394, 397
AseI	ATTAAT	2 cut(s)	129, 387
AspLEI	GCGC	1 cut(s)	412
AspS9I	GGNCC	2 cut(s)	226, 227
AsuC2I	CCSGG	1 cut(s)	230
BaeGI	GKGCMC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	230
BbsI	GAAGAC	1 cut(s)	165
BbvI	GCAGC	2 cut(s)	381, 384
BccI	CCATC	2 cut(s)	101, 169
BceAI	ACGGC	1 cut(s)	190
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	93
BisI	GCNGC	2 cut(s)	395, 398
BlsI	GCNGC	2 cut(s)	396, 399
BmcAI	AGTACT	1 cut(s)	426
Bme1390I	CCNGG	1 cut(s)	230
BmgT120I	GGNCC	2 cut(s)	226, 227
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	1 cut(s)	230
BmrI	ACTGGG	2 cut(s)	55, 250
BmuI	ACTGGG	2 cut(s)	55, 250
BpiI	GAAGAC	1 cut(s)	165
BpuMI	CCSGG	1 cut(s)	230
BsaXI	ACNNNNNCTCC	4 cut(s)	41, 71, 92, 122
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 260
Bse1I	ACTGG	4 cut(s)	50, 256, 432, 465
BseLI	CCNNNNNNNGG	2 cut(s)	73, 260
BseNI	ACTGG	4 cut(s)	50, 256, 432, 465
BseRI	GAGGAG	3 cut(s)	100, 172, 175
BseSI	GKGCMC	1 cut(s)	230
BseXI	GCAGC	2 cut(s)	381, 384
BsgI	GTGCAG	1 cut(s)	383
Bsh1236I	CGCG	1 cut(s)	410
BshFI	GGCC	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	2 cut(s)	73, 260
BsmAI	GTCTC	1 cut(s)	93
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	1 cut(s)	228
Bsp120I	GGGCCC	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp143I	GATC	2 cut(s)	19, 250
BspACI	CCGC	4 cut(s)	280, 290, 331, 337
BspANI	GGCC	1 cut(s)	228
BspFNI	CGCG	1 cut(s)	410
BspLI	GGNNCC	1 cut(s)	228
BspPI	GGATC	2 cut(s)	14, 245
BsrI	ACTGG	4 cut(s)	50, 256, 432, 465
BssMI	GATC	2 cut(s)	19, 250
Bst4CI	ACNGT	1 cut(s)	168
BstFNI	CGCG	1 cut(s)	410
BstHHI	GCGC	1 cut(s)	412
BstKTI	GATC	2 cut(s)	22, 253
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	2 cut(s)	19, 250
BstMWI	GCNNNNNNNGC	2 cut(s)	244, 328
BstSCI	CCNGG	1 cut(s)	228
BstSLI	GKGCMC	1 cut(s)	230
BstUI	CGCG	1 cut(s)	410
BstV1I	GCAGC	2 cut(s)	381, 384
BstV2I	GAAGAC	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	228
BtsIMutI	CAGTG	2 cut(s)	43, 164
CfoI	GCGC	1 cut(s)	412
Cfr13I	GGNCC	2 cut(s)	226, 227
Csp6I	GTAC	1 cut(s)	425
CviJI	RGCY	8 cut(s)	30, 92, 228, 247, 394, 434, 452, 464
CviKI_1	RGCY	8 cut(s)	30, 92, 228, 247, 394, 434, 452, 464
CviQI	GTAC	1 cut(s)	425
DpnI	GATC	2 cut(s)	21, 252
DpnII	GATC	2 cut(s)	19, 250
EciI	GGCGGA	1 cut(s)	346
Eco24I	GRGCYC	1 cut(s)	230
EcoT38I	GRGCYC	1 cut(s)	230
FaiI	YATR	2 cut(s)	302, 441
FaqI	GGGAC	1 cut(s)	62
FauI	CCCGC	1 cut(s)	273
Fnu4HI	GCNGC	2 cut(s)	395, 398
FriOI	GRGCYC	1 cut(s)	230
Fsp4HI	GCNGC	2 cut(s)	395, 398
GlaI	GCGC	1 cut(s)	411
GluI	GCNGC	2 cut(s)	395, 398
HaeIII	GGCC	1 cut(s)	228
HapII	CCGG	1 cut(s)	230
HhaI	GCGC	1 cut(s)	412
Hin6I	GCGC	1 cut(s)	410
HinP1I	GCGC	1 cut(s)	410
HinfI	GANTC	3 cut(s)	101, 212, 221
HpaII	CCGG	1 cut(s)	230
Hpy188I	TCNGA	5 cut(s)	98, 211, 217, 345, 355
Hpy188III	TCNNGA	3 cut(s)	23, 134, 151
Hpy99I	CGWCG	2 cut(s)	199, 221
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4V	TGCA	1 cut(s)	400
HpyF10VI	GCNNNNNNNGC	2 cut(s)	244, 328
HspAI	GCGC	1 cut(s)	410
Kzo9I	GATC	2 cut(s)	19, 250
LpnPI	CCDG	8 cut(s)	31, 36, 243, 260, 269, 413, 434, 446
Lsp1109I	GCAGC	2 cut(s)	381, 384
MalI	GATC	2 cut(s)	21, 252
MboI	GATC	2 cut(s)	19, 250
MboII	GAAGA	3 cut(s)	165, 168, 253
MhlI	GDGCHC	1 cut(s)	230
MluCI	AATT	6 cut(s)	14, 35, 68, 126, 384, 466
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	2 cut(s)	129, 240
MseI	TTAA	2 cut(s)	129, 387
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	230
MvnI	CGCG	1 cut(s)	410
MwoI	GCNNNNNNNGC	2 cut(s)	244, 328
NciI	CCSGG	1 cut(s)	230
NdeII	GATC	2 cut(s)	19, 250
NlaIV	GGNNCC	1 cut(s)	228
NmeAIII	GCCGAG	1 cut(s)	415
PcsI	WCGNNNNNNNCGW	1 cut(s)	203
PfeI	GAWTC	2 cut(s)	212, 221
PkrI	GCNGC	2 cut(s)	396, 399
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
PshBI	ATTAAT	2 cut(s)	129, 387
PspN4I	GGNNCC	1 cut(s)	228
PspOMI	GGGCCC	1 cut(s)	226
PspPI	GGNCC	2 cut(s)	226, 227
RsaI	GTAC	1 cut(s)	426
RsaNI	GTAC	1 cut(s)	425
SaqAI	TTAA	2 cut(s)	129, 387
SatI	GCNGC	2 cut(s)	395, 398
Sau3AI	GATC	2 cut(s)	19, 250
Sau96I	GGNCC	2 cut(s)	226, 227
ScaI	AGTACT	1 cut(s)	426
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	230
SetI	ASST	4 cut(s)	144, 150, 158, 396
Sse9I	AATT	6 cut(s)	14, 35, 68, 126, 384, 466
SsiI	CCGC	4 cut(s)	280, 290, 331, 337
StyD4I	CCNGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	168
TaqI	TCGA	2 cut(s)	18, 72
TasI	AATT	6 cut(s)	14, 35, 68, 126, 384, 466
TatI	WGTACW	1 cut(s)	424
TfiI	GAWTC	2 cut(s)	212, 221
Tru1I	TTAA	2 cut(s)	129, 387
Tru9I	TTAA	2 cut(s)	129, 387
TscAI	CASTG	2 cut(s)	50, 171
TseI	GCWGC	2 cut(s)	394, 397
TspDTI	ATGAA	2 cut(s)	431, 435
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	2 cut(s)	50, 171
VspI	ATTAAT	2 cut(s)	129, 387
ZrmI	AGTACT	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.