Rh4BG277900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0007742
Physical Location & Seq
Forward (+)
45175224 .. 45176069
846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG277900.1

Sequence Viewer

Length: 366 bp
ATGGTGGGCGGCCAATTCGATCCAGAAGGCTTGGAATTGAAGCACTGGGAGAAAATCTCCAAAACCCAATTCAAGGAATGGTTAATGGTAGCCATCAGAGACTCCAACTGCTCCGTCTTCCCTCCAATTAATCACGAAAACGTCCACCTCCCAACCTCCCCATCACTATCGTCTTCTTCCTCCTCCTCGTACATGACGGCGAAATCCAGGTCGTCGAAGCCTCCGAAGAGCTCGTTGTGGTTGAAGCCAGAGCTGCTCACATCGAAGAACTTCTCATTGTCGTCGTCGGCGACGGCAACGGGGACCTCGAGCATGGGAATCGAGGAGGCGCGTGAGGCGTGGAAGGCGCCGAAAATCTCGCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.27

Weight (kDa)

9.13

Isoelectric Point (pI)

56.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 346
AccII CGCG 1 cut(s) 331
AciI CCGC 1 cut(s) 9
AclWI GGATC 1 cut(s) 14
AcoI YGGCCR 1 cut(s) 10
AcyI GRCGYC 1 cut(s) 347
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 3 cut(s) 40, 73, 244
AjnI CCWGG 1 cut(s) 206
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AluBI AGCT 2 cut(s) 231, 253
AluI AGCT 2 cut(s) 231, 253
Alw21I GWGCWC 1 cut(s) 233
Alw26I GTCTC 1 cut(s) 93
AlwI GGATC 1 cut(s) 14
Ama87I CYCGRG 1 cut(s) 307
AoxI GGCC 1 cut(s) 10
ApeKI GCWGC 1 cut(s) 253
ArsI GACNNNNNNTTYG 2 cut(s) 194, 226
AseI ATTAAT 1 cut(s) 129
Asp700I GAANNNNTTC 1 cut(s) 269
AspLEI GCGC 2 cut(s) 331, 349
AspS9I GGNCC 1 cut(s) 303
AvaI CYCGRG 1 cut(s) 307
AvaII GGWCC 1 cut(s) 303
BanI GGYRCC 1 cut(s) 346
BanII GRGCYC 1 cut(s) 233
BbsI GAAGAC 2 cut(s) 109, 165
Bbv12I GWGCWC 1 cut(s) 233
BbvI GCAGC 1 cut(s) 240
BccI CCATC 2 cut(s) 101, 169
BceAI ACGGC 3 cut(s) 213, 309, 346
BcgI CGANNNNNNTGC 2 cut(s) 301, 335
BciT130I CCWGG 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 93
BfoI RGCGCY 1 cut(s) 350
BisI GCNGC 2 cut(s) 10, 254
BlsI GCNGC 2 cut(s) 11, 255
Bme1390I CCNGG 1 cut(s) 208
Bme18I GGWCC 1 cut(s) 303
BmeT110I CYCGRG 1 cut(s) 307
BmgT120I GGNCC 1 cut(s) 303
BmiI GGNNCC 2 cut(s) 304, 348
BmrFI CCNGG 1 cut(s) 208
BmrI ACTGGG 1 cut(s) 55
BmuI ACTGGG 1 cut(s) 55
BpiI GAAGAC 2 cut(s) 109, 165
BplI GAGNNNNNCTC 2 cut(s) 41, 73
BsaHI GRCGYC 1 cut(s) 347
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 50
BseBI CCWGG 1 cut(s) 208
BseLI CCNNNNNNNGG 1 cut(s) 73
BseNI ACTGG 1 cut(s) 50
BseRI GAGGAG 3 cut(s) 172, 175, 338
BseXI GCAGC 1 cut(s) 240
Bsh1236I CGCG 1 cut(s) 331
BshFI GGCC 1 cut(s) 12
BshNI GGYRCC 1 cut(s) 346
BsiHKAI GWGCWC 1 cut(s) 233
BsiHKCI CYCGRG 1 cut(s) 307
BslFI GGGAC 1 cut(s) 316
BslI CCNNNNNNNGG 1 cut(s) 73
BsmAI GTCTC 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 316
BsnI GGCC 1 cut(s) 12
BsoBI CYCGRG 1 cut(s) 307
Bsp1286I GDGCHC 1 cut(s) 233
Bsp143I GATC 1 cut(s) 19
BspACI CCGC 1 cut(s) 9
BspANI GGCC 1 cut(s) 12
BspFNI CGCG 1 cut(s) 331
BspLI GGNNCC 2 cut(s) 304, 348
BspPI GGATC 1 cut(s) 14
BspQI GCTCTTC 1 cut(s) 221
BspT107I GGYRCC 1 cut(s) 346
BsrI ACTGG 1 cut(s) 50
BssMI GATC 1 cut(s) 19
BssNI GRCGYC 1 cut(s) 347
Bst2UI CCWGG 1 cut(s) 208
Bst6I CTCTTC 1 cut(s) 221
BstACI GRCGYC 1 cut(s) 347
BstFNI CGCG 1 cut(s) 331
BstH2I RGCGCY 1 cut(s) 350
BstHHI GCGC 2 cut(s) 331, 349
BstKTI GATC 1 cut(s) 22
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 1 cut(s) 19
BstMWI GCNNNNNNNGC 3 cut(s) 253, 335, 344
BstNI CCWGG 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 206
BstUI CGCG 1 cut(s) 331
BstV1I GCAGC 1 cut(s) 240
BstV2I GAAGAC 2 cut(s) 109, 165
BsuRI GGCC 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 43
CfoI GCGC 2 cut(s) 331, 349
Cfr13I GGNCC 1 cut(s) 303
Csp6I GTAC 1 cut(s) 190
CviAII CATG 2 cut(s) 193, 313
CviJI RGCY 7 cut(s) 12, 30, 92, 220, 231, 247, 253
CviKI_1 RGCY 7 cut(s) 12, 30, 92, 220, 231, 247, 253
CviQI GTAC 1 cut(s) 190
DinI GGCGCC 1 cut(s) 348
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
EaeI YGGCCR 1 cut(s) 10
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
Ecl136II GAGCTC 1 cut(s) 231
Eco24I GRGCYC 1 cut(s) 233
Eco47I GGWCC 1 cut(s) 303
Eco53kI GAGCTC 1 cut(s) 231
Eco88I CYCGRG 1 cut(s) 307
EcoICRI GAGCTC 1 cut(s) 231
EcoO109I RGGNCCY 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 206
EcoT38I GRGCYC 1 cut(s) 233
EgeI GGCGCC 1 cut(s) 348
EheI GGCGCC 1 cut(s) 348
FaeI CATG 2 cut(s) 196, 316
FaiI YATR 2 cut(s) 194, 314
FaqI GGGAC 1 cut(s) 316
FatI CATG 2 cut(s) 192, 312
Fnu4HI GCNGC 2 cut(s) 10, 254
FriOI GRGCYC 1 cut(s) 233
Fsp4HI GCNGC 2 cut(s) 10, 254
GlaI GCGC 2 cut(s) 330, 348
GluI GCNGC 2 cut(s) 10, 254
HaeII RGCGCY 1 cut(s) 350
HaeIII GGCC 1 cut(s) 12
HhaI GCGC 2 cut(s) 331, 349
Hin1I GRCGYC 1 cut(s) 347
Hin1II CATG 2 cut(s) 196, 316
Hin6I GCGC 2 cut(s) 329, 347
HinP1I GCGC 2 cut(s) 329, 347
HinfI GANTC 2 cut(s) 101, 318
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 2 cut(s) 98, 225
Hpy188III TCNNGA 2 cut(s) 23, 134
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 4 cut(s) 217, 286, 289, 295
HpyAV CCTTC 2 cut(s) 20, 337
HpyCH4IV ACGT 1 cut(s) 141
HpyF10VI GCNNNNNNNGC 3 cut(s) 253, 335, 344
HpySE526I ACGT 1 cut(s) 141
Hsp92I GRCGYC 1 cut(s) 347
Hsp92II CATG 2 cut(s) 196, 316
HspAI GCGC 2 cut(s) 329, 347
KasI GGCGCC 1 cut(s) 346
Kzo9I GATC 1 cut(s) 19
LguI GCTCTTC 1 cut(s) 221
LmnI GCTCC 1 cut(s) 116
LpnPI CCDG 5 cut(s) 31, 36, 193, 220, 261
Lsp1109I GCAGC 1 cut(s) 240
MaeII ACGT 1 cut(s) 141
MalI GATC 1 cut(s) 21
MboI GATC 1 cut(s) 19
MboII GAAGA 5 cut(s) 109, 165, 168, 238, 277
MhlI GDGCHC 1 cut(s) 233
MluCI AATT 4 cut(s) 14, 35, 68, 126
Mly113I GGCGCC 1 cut(s) 347
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 129
MroXI GAANNNNTTC 1 cut(s) 269
MseI TTAA 2 cut(s) 83, 129
MspR9I CCNGG 1 cut(s) 208
MvaI CCWGG 1 cut(s) 208
MvnI CGCG 1 cut(s) 331
MwoI GCNNNNNNNGC 3 cut(s) 253, 335, 344
NarI GGCGCC 1 cut(s) 347
NdeII GATC 1 cut(s) 19
NlaIII CATG 2 cut(s) 196, 316
NlaIV GGNNCC 2 cut(s) 304, 348
PaeR7I CTCGAG 1 cut(s) 307
PciSI GCTCTTC 1 cut(s) 221
PcsI WCGNNNNNNNCGW 3 cut(s) 221, 287, 305
PdmI GAANNNNTTC 1 cut(s) 269
PfeI GAWTC 1 cut(s) 318
PkrI GCNGC 2 cut(s) 11, 255
PleI GAGTC 1 cut(s) 95
PluTI GGCGCC 1 cut(s) 350
PpsI GAGTC 1 cut(s) 95
PpuMI RGGWCCY 1 cut(s) 303
PshBI ATTAAT 1 cut(s) 129
Psp124BI GAGCTC 1 cut(s) 233
Psp5II RGGWCCY 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 206
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 2 cut(s) 304, 348
PspPI GGNCC 1 cut(s) 303
PspPPI RGGWCCY 1 cut(s) 303
PspXI VCTCGAGB 1 cut(s) 307
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SacI GAGCTC 1 cut(s) 233
SapI GCTCTTC 1 cut(s) 221
SaqAI TTAA 2 cut(s) 83, 129
SatI GCNGC 2 cut(s) 10, 254
Sau3AI GATC 1 cut(s) 19
Sau96I GGNCC 1 cut(s) 303
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 208
SduI GDGCHC 1 cut(s) 233
SetI ASST 7 cut(s) 144, 150, 158, 212, 233, 255, 308
SfoI GGCGCC 1 cut(s) 348
Sfr274I CTCGAG 1 cut(s) 307
SinI GGWCC 1 cut(s) 303
SlaI CTCGAG 1 cut(s) 307
SmlI CTYRAG 1 cut(s) 307
SmoI CTYRAG 1 cut(s) 307
Sse9I AATT 4 cut(s) 14, 35, 68, 126
SsiI CCGC 1 cut(s) 9
SspDI GGCGCC 1 cut(s) 346
SstI GAGCTC 1 cut(s) 233
StyD4I CCNGG 1 cut(s) 206
TaiI ACGT 1 cut(s) 144
TaqI TCGA 5 cut(s) 18, 215, 263, 308, 321
TasI AATT 4 cut(s) 14, 35, 68, 126
TauI GCSGC 1 cut(s) 12
TfiI GAWTC 1 cut(s) 318
Tru1I TTAA 2 cut(s) 83, 129
Tru9I TTAA 2 cut(s) 83, 129
TscAI CASTG 1 cut(s) 50
TseI GCWGC 1 cut(s) 253
TspGWI ACGGA 1 cut(s) 103
TspRI CASTG 1 cut(s) 50
VpaK11BI GGWCC 1 cut(s) 303
VspI ATTAAT 1 cut(s) 129
XhoI CTCGAG 1 cut(s) 307
XmnI GAANNNNTTC 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.