Rroxscaffold_5G00360990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0007742
Physical Location & Seq
Reverse (-)
41645375 .. 41645863
489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00360990.1

Sequence Viewer

Length: 489 bp
ATGGTGGGCGACCAATTTGATCCAGAAGGCTTGGAATTGAAGCACTGGGAGAAAATCTCCAAAACCCAATTCAAGGAATGGTCAATGGTAGCCATCAGAGACTCCAACTGCTCCGTCTTCCCTCCAATTAATCACAAAAACCTCCACCTCCCTACCTCCCCATTACTATCGTCTTCTTCCTCCTCGTCGCTCTCGTCTTTTTCCCCGTCTGATTTCCATGAATCGAGCCCTGTTTGGCCAAAGAAGCGTGATTCCCAGGTCAGAAAATGCGGCGAATTGAGGAGCTGGGTGGGTTTTGGAGTTAGGTTAGTGTGTTCTAAGGTTTTGGGGATTGGTTCGTTGATTGGGTGGGAAAAAGTTTGGTGCTTTGGTTCTAGGGCGAGCATTGTGGCGGTGGTGTTTGTGGTGTGGTTGTTTTACTTGCGAGTGAGGCAGAGGCGGTATCGGAAGCGTTCCGATTTGATTATCAAACAAAAAGATGAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.62

Weight (kDa)

9.77

Isoelectric Point (pI)

52.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 270, 392, 439
AclWI GGATC 1 cut(s) 14
AcoI YGGCCR 1 cut(s) 236
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 2 cut(s) 40, 73
AjnI CCWGG 1 cut(s) 255
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AluBI AGCT 1 cut(s) 285
AluI AGCT 1 cut(s) 285
Alw26I GTCTC 1 cut(s) 93
AlwI GGATC 1 cut(s) 14
AoxI GGCC 1 cut(s) 236
AseI ATTAAT 1 cut(s) 129
BalI TGGCCA 1 cut(s) 238
BanII GRGCYC 1 cut(s) 230
BbsI GAAGAC 2 cut(s) 109, 165
BccI CCATC 1 cut(s) 101
BciT130I CCWGG 1 cut(s) 257
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 1 cut(s) 375
BisI GCNGC 1 cut(s) 271
BlsI GCNGC 1 cut(s) 272
Bme1390I CCNGG 1 cut(s) 257
BmrFI CCNGG 1 cut(s) 257
BmrI ACTGGG 1 cut(s) 55
BmuI ACTGGG 1 cut(s) 55
BpiI GAAGAC 2 cut(s) 109, 165
BplI GAGNNNNNCTC 2 cut(s) 41, 73
BsaJI CCNNGG 1 cut(s) 255
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 50
BseBI CCWGG 1 cut(s) 257
BseDI CCNNGG 1 cut(s) 255
BseLI CCNNNNNNNGG 1 cut(s) 73
BseNI ACTGG 1 cut(s) 50
BseRI GAGGAG 2 cut(s) 172, 295
BseYI CCCAGC 1 cut(s) 285
BshFI GGCC 1 cut(s) 238
BslI CCNNNNNNNGG 1 cut(s) 73
BsmAI GTCTC 1 cut(s) 93
BsnI GGCC 1 cut(s) 238
Bsp1286I GDGCHC 1 cut(s) 230
Bsp143I GATC 1 cut(s) 19
BspACI CCGC 3 cut(s) 270, 392, 439
BspANI GGCC 1 cut(s) 238
BspPI GGATC 1 cut(s) 14
BsrI ACTGG 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 1 cut(s) 19
Bst2UI CCWGG 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 382
BstDEI CTNAG 1 cut(s) 318
BstKTI GATC 1 cut(s) 22
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 1 cut(s) 19
BstMWI GCNNNNNNNGC 2 cut(s) 244, 430
BstNI CCWGG 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 255
BstV2I GAAGAC 2 cut(s) 109, 165
BsuRI GGCC 1 cut(s) 238
BtsIMutI CAGTG 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 382
CviAII CATG 1 cut(s) 218
CviJI RGCY 5 cut(s) 30, 92, 228, 238, 285
CviKI_1 RGCY 5 cut(s) 30, 92, 228, 238, 285
DdeI CTNAG 1 cut(s) 318
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
EaeI YGGCCR 1 cut(s) 236
Eco24I GRGCYC 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 255
EcoT38I GRGCYC 1 cut(s) 230
FaeI CATG 1 cut(s) 221
FaiI YATR 1 cut(s) 219
FatI CATG 1 cut(s) 217
Fnu4HI GCNGC 1 cut(s) 271
FriOI GRGCYC 1 cut(s) 230
Fsp4HI GCNGC 1 cut(s) 271
FspBI CTAG 1 cut(s) 375
GluI GCNGC 1 cut(s) 271
GsaI CCCAGC 1 cut(s) 289
HaeIII GGCC 1 cut(s) 238
Hin1II CATG 1 cut(s) 221
HinfI GANTC 3 cut(s) 101, 221, 251
Hpy188I TCNGA 5 cut(s) 98, 211, 263, 447, 457
Hpy188III TCNNGA 1 cut(s) 23
Hpy99I CGWCG 1 cut(s) 190
HpyAV CCTTC 1 cut(s) 20
HpyF10VI GCNNNNNNNGC 2 cut(s) 244, 430
HpyF3I CTNAG 1 cut(s) 318
Hsp92II CATG 1 cut(s) 221
Kzo9I GATC 1 cut(s) 19
LmnI GCTCC 2 cut(s) 116, 282
LpnPI CCDG 6 cut(s) 31, 36, 242, 243, 269, 271
MaeI CTAG 1 cut(s) 375
MalI GATC 1 cut(s) 21
MboI GATC 1 cut(s) 19
MboII GAAGA 3 cut(s) 109, 165, 168
MhlI GDGCHC 1 cut(s) 230
MlsI TGGCCA 1 cut(s) 238
MluCI AATT 5 cut(s) 14, 35, 68, 126, 275
MluNI TGGCCA 1 cut(s) 238
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 129
Mox20I TGGCCA 1 cut(s) 238
MscI TGGCCA 1 cut(s) 238
MseI TTAA 1 cut(s) 129
Msp20I TGGCCA 1 cut(s) 238
MspR9I CCNGG 1 cut(s) 257
MvaI CCWGG 1 cut(s) 257
MwoI GCNNNNNNNGC 2 cut(s) 244, 430
NdeII GATC 1 cut(s) 19
NlaIII CATG 1 cut(s) 221
PcsI WCGNNNNNNNCGW 1 cut(s) 191
PfeI GAWTC 2 cut(s) 221, 251
PkrI GCNGC 1 cut(s) 272
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PshBI ATTAAT 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 255
PspFI CCCAGC 1 cut(s) 285
PspGI CCWGG 1 cut(s) 255
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 1 cut(s) 271
Sau3AI GATC 1 cut(s) 19
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 257
SduI GDGCHC 1 cut(s) 230
SetI ASST 8 cut(s) 144, 150, 158, 261, 287, 308, 324, 486
Sse9I AATT 5 cut(s) 14, 35, 68, 126, 275
SsiI CCGC 3 cut(s) 270, 392, 439
SspMI CTAG 1 cut(s) 375
StyD4I CCNGG 1 cut(s) 255
TaqI TCGA 1 cut(s) 224
TasI AATT 5 cut(s) 14, 35, 68, 126, 275
TauI GCSGC 1 cut(s) 273
TfiI GAWTC 2 cut(s) 221, 251
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 1 cut(s) 50
TspDTI ATGAA 1 cut(s) 234
TspGWI ACGGA 1 cut(s) 103
TspRI CASTG 1 cut(s) 50
VspI ATTAAT 1 cut(s) 129
XspI CTAG 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.