Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007742

Physical Location & Seq

Genomic Coordinates Forward (+)

16000710 .. 16001961

Gene Structure 1252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G198500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGTGGGCGAGCACTTTGCTCCAGAGGGCTTCGAATTCAAACAAATCCCCAAAACCCATTTGAAGGAATGCTCCATGGTCGCCATCAGAGACTCTCCTCTCTCATCCTACAATGACTGCTCTGTCTTCCCTCCAATCAACCACGAAAATCTCCACCTTCCATCACAACCCAATCAACAACACTCTGACCCATCGCCATCTTCTCCATCACTATCATCTTCTTCGTCATCGTCGCTGTCCTCTTTTTCACCTTCCGATTCCGATGAATCAGGCCCGGTTTCACCGTTATCGTCAGGTACGCAGGTCCGGAAACCTGGTCAAGGCACCACCTGGATAGGAATTCGGGTTGAAGTAGTGCGTTCCAAGCTTTTTGCCATGGCTTCCTCATTTGGGTTCGATAAAGTTTGGTGCTTTGCCTCTGGCGCGGGCATGGCGGCTGGGGTGTTCATATTGTTGTCCTTGTACTTGCGCGCTCGGCAAAGGCGGTATCGGAATCATTTGAAATTGATTGTGAAAGAGAAAGATGAGAAAATTAATAAACTCCTGCACCAAATTGCTCAGATGAACGAAGTTCTGGTAGCTCGGCATAGAGTTCTGGCTTCAAAACTGGCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

206

Amino Acids

22.58

Weight (kDa)

9.37

Isoelectric Point (pI)

50.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07730 AT5G61360
fragaria_vesca	FvH4_5g14530
malus_domestica	MD06G1197700.v1.1 MD14G1205100.v1.1
prunus_persica	Prupe.5G198500_v2.0.a1
pyrus_communis	pycom06g17470 pycom14g16950
rosa_chinensis	RchiOBHm_Chr7g0182121
rosa_laevigata	RLG00000005149
rosa_multiflora	Rmu_co8282759.1_g000001 Rmu_sc0003511.1_g000005 Rmu_sc0040499.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271490 Rroxscaffold_5G00360990
rosa_rugosa	Rorug06G0445800
rosa_samantha	Rh4BG277900 Rh7AG048500 Rh7BG048300 Rh7CG049800 Rh7DG047700
rosa_wichuraiana	Rw0G021040 Rw2G026110 Rw7G003960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	122
Acc36I	ACCTGC	1 cut(s)	292
AccB1I	GGYRCC	1 cut(s)	323
AccII	CGCG	2 cut(s)	425, 471
AccIII	TCCGGA	1 cut(s)	306
AciI	CCGC	3 cut(s)	425, 434, 484
AcsI	RAATTY	2 cut(s)	35, 339
AfaI	GTAC	2 cut(s)	298, 464
AfiI	CCNNNNNNNGG	3 cut(s)	64, 320, 390
AgsI	TTSAA	5 cut(s)	40, 64, 350, 502, 603
AjnI	CCWGG	2 cut(s)	313, 329
AluBI	AGCT	2 cut(s)	367, 581
AluI	AGCT	2 cut(s)	367, 581
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	84
Aor13HI	TCCGGA	1 cut(s)	306
AoxI	GGCC	1 cut(s)	271
ApoI	RAATTY	2 cut(s)	35, 339
AseI	ATTAAT	1 cut(s)	534
AspLEI	GCGC	3 cut(s)	425, 471, 473
AspS9I	GGNCC	2 cut(s)	272, 304
AsuC2I	CCSGG	1 cut(s)	275
AsuHPI	GGTGA	2 cut(s)	240, 273
AsuII	TTCGAA	1 cut(s)	33
AvaII	GGWCC	1 cut(s)	304
BaeI	ACNNNNGTAYC	2 cut(s)	288, 321
BanI	GGYRCC	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	15
BccI	CCATC	5 cut(s)	92, 169, 199, 205, 214
BcgI	CGANNNNNNTGC	1 cut(s)	33
BciT130I	CCWGG	2 cut(s)	315, 331
BcnI	CCSGG	1 cut(s)	275
BcoDI	GTCTC	1 cut(s)	84
BfuAI	ACCTGC	1 cut(s)	292
BisI	GCNGC	1 cut(s)	435
BlsI	GCNGC	1 cut(s)	436
Bme1390I	CCNGG	3 cut(s)	275, 315, 331
Bme18I	GGWCC	1 cut(s)	304
BmgT120I	GGNCC	2 cut(s)	272, 304
BmiI	GGNNCC	1 cut(s)	325
BmrFI	CCNGG	3 cut(s)	275, 315, 331
BpiI	GAAGAC	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	6
Bpu14I	TTCGAA	1 cut(s)	33
BpuMI	CCSGG	1 cut(s)	275
BsaJI	CCNNGG	2 cut(s)	75, 375
BsaWI	WCCGGW	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 320, 390
Bse1I	ACTGG	1 cut(s)	612
BseAI	TCCGGA	1 cut(s)	306
BseBI	CCWGG	2 cut(s)	315, 331
BseDI	CCNNGG	2 cut(s)	75, 375
BseGI	GGATG	1 cut(s)	104
BseLI	CCNNNNNNNGG	3 cut(s)	64, 320, 390
BseMII	CTCAG	1 cut(s)	572
BseNI	ACTGG	1 cut(s)	612
BsePI	GCGCGC	1 cut(s)	469
BseRI	GAGGAG	1 cut(s)	87
BseYI	CCCAGC	1 cut(s)	437
BsgI	GTGCAG	1 cut(s)	530
Bsh1236I	CGCG	2 cut(s)	425, 471
BshFI	GGCC	1 cut(s)	273
BshNI	GGYRCC	1 cut(s)	323
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	2 cut(s)	275, 307
BslI	CCNNNNNNNGG	3 cut(s)	64, 320, 390
BsmAI	GTCTC	1 cut(s)	84
BsmI	GAATGC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	273
Bsp119I	TTCGAA	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp13I	TCCGGA	1 cut(s)	306
Bsp19I	CCATGG	2 cut(s)	75, 375
BspACI	CCGC	3 cut(s)	425, 434, 484
BspANI	GGCC	1 cut(s)	273
BspCNI	CTCAG	1 cut(s)	571
BspEI	TCCGGA	1 cut(s)	306
BspFNI	CGCG	2 cut(s)	425, 471
BspLI	GGNNCC	1 cut(s)	325
BspMI	ACCTGC	1 cut(s)	292
BspT104I	TTCGAA	1 cut(s)	33
BspT107I	GGYRCC	1 cut(s)	323
BsrI	ACTGG	1 cut(s)	612
BssECI	CCNNGG	2 cut(s)	75, 375
BssHII	GCGCGC	1 cut(s)	469
BssT1I	CCWWGG	2 cut(s)	75, 375
Bst2UI	CCWGG	2 cut(s)	315, 331
Bst4CI	ACNGT	1 cut(s)	285
BstBI	TTCGAA	1 cut(s)	33
BstC8I	GCNNGC	3 cut(s)	11, 427, 471
BstDEI	CTNAG	1 cut(s)	558
BstDSI	CCRYGG	2 cut(s)	75, 375
BstENI	CCTNNNNNAGG	1 cut(s)	318
BstF5I	GGATG	1 cut(s)	104
BstFNI	CGCG	2 cut(s)	425, 471
BstHHI	GCGC	3 cut(s)	425, 471, 473
BstMAI	GTCTC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	4 cut(s)	364, 422, 431, 475
BstNI	CCWGG	2 cut(s)	315, 331
BstSCI	CCNGG	3 cut(s)	273, 313, 329
BstUI	CGCG	2 cut(s)	425, 471
BstV2I	GAAGAC	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	273
BtgI	CCRYGG	2 cut(s)	75, 375
BtgZI	GCGATG	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	104
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	3 cut(s)	11, 427, 471
CfoI	GCGC	3 cut(s)	425, 471, 473
Cfr13I	GGNCC	2 cut(s)	272, 304
CsiI	ACCWGGT	1 cut(s)	313
Csp6I	GTAC	2 cut(s)	297, 463
CviAII	CATG	3 cut(s)	76, 376, 430
CviJI	RGCY	8 cut(s)	30, 273, 367, 380, 437, 581, 599, 611
CviKI_1	RGCY	8 cut(s)	30, 273, 367, 380, 437, 581, 599, 611
CviQI	GTAC	2 cut(s)	297, 463
DdeI	CTNAG	1 cut(s)	558
DrdI	GACNNNNNNGTC	1 cut(s)	122
DseDI	GACNNNNNNGTC	1 cut(s)	122
Eco130I	CCWWGG	2 cut(s)	75, 375
Eco47I	GGWCC	1 cut(s)	304
EcoNI	CCTNNNNNAGG	1 cut(s)	318
EcoRI	GAATTC	2 cut(s)	35, 339
EcoRII	CCWGG	2 cut(s)	313, 329
EcoT14I	CCWWGG	2 cut(s)	75, 375
ErhI	CCWWGG	2 cut(s)	75, 375
FaeI	CATG	3 cut(s)	79, 379, 433
FaiI	YATR	5 cut(s)	77, 377, 431, 449, 588
FatI	CATG	3 cut(s)	75, 375, 429
FauI	CCCGC	1 cut(s)	418
Fnu4HI	GCNGC	1 cut(s)	435
FokI	GGATG	1 cut(s)	91
Fsp4HI	GCNGC	1 cut(s)	435
GlaI	GCGC	3 cut(s)	424, 470, 472
GluI	GCNGC	1 cut(s)	435
GsaI	CCCAGC	1 cut(s)	441
GsuI	CTGGAG	1 cut(s)	6
HaeIII	GGCC	1 cut(s)	273
HapII	CCGG	2 cut(s)	275, 307
HhaI	GCGC	3 cut(s)	425, 471, 473
Hin1II	CATG	3 cut(s)	79, 379, 433
Hin6I	GCGC	3 cut(s)	423, 469, 471
HinP1I	GCGC	3 cut(s)	423, 469, 471
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	4 cut(s)	92, 257, 266, 493
HpaII	CCGG	2 cut(s)	275, 307
HphI	GGTGA	2 cut(s)	240, 273
Hpy188I	TCNGA	6 cut(s)	89, 187, 256, 262, 492, 561
Hpy188III	TCNNGA	2 cut(s)	23, 307
Hpy99I	CGWCG	1 cut(s)	235
HpyAV	CCTTC	3 cut(s)	58, 167, 261
HpyCH4III	ACNGT	1 cut(s)	285
HpyCH4V	TGCA	1 cut(s)	547
HpyF10VI	GCNNNNNNNGC	4 cut(s)	364, 422, 431, 475
HpyF3I	CTNAG	1 cut(s)	558
Hsp92II	CATG	3 cut(s)	79, 379, 433
HspAI	GCGC	3 cut(s)	423, 469, 471
Kpn2I	TCCGGA	1 cut(s)	306
LmnI	GCTCC	2 cut(s)	25, 77
MabI	ACCWGGT	1 cut(s)	313
MboII	GAAGA	4 cut(s)	118, 192, 210, 213
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	6 cut(s)	35, 339, 503, 531, 552, 613
MlyI	GAGTC	1 cut(s)	86
MnlI	CCTC	6 cut(s)	19, 108, 141, 250, 394, 427
MroI	TCCGGA	1 cut(s)	306
MseI	TTAA	1 cut(s)	534
MspI	CCGG	2 cut(s)	275, 307
MspR9I	CCNGG	3 cut(s)	275, 315, 331
Mva1269I	GAATGC	1 cut(s)	74
MvaI	CCWGG	2 cut(s)	315, 331
MvnI	CGCG	2 cut(s)	425, 471
MwoI	GCNNNNNNNGC	4 cut(s)	364, 422, 431, 475
NciI	CCSGG	1 cut(s)	275
NcoI	CCATGG	2 cut(s)	75, 375
NlaIII	CATG	3 cut(s)	79, 379, 433
NlaIV	GGNNCC	1 cut(s)	325
NmeAIII	GCCGAG	2 cut(s)	454, 562
NspV	TTCGAA	1 cut(s)	33
PauI	GCGCGC	1 cut(s)	469
PctI	GAATGC	1 cut(s)	74
PfeI	GAWTC	3 cut(s)	257, 266, 493
PkrI	GCNGC	1 cut(s)	436
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
PshBI	ATTAAT	1 cut(s)	534
Psp6I	CCWGG	2 cut(s)	313, 329
PspFI	CCCAGC	1 cut(s)	437
PspGI	CCWGG	2 cut(s)	313, 329
PspN4I	GGNNCC	1 cut(s)	325
PspPI	GGNCC	2 cut(s)	272, 304
PteI	GCGCGC	1 cut(s)	469
RsaI	GTAC	2 cut(s)	298, 464
RsaNI	GTAC	2 cut(s)	297, 463
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	1 cut(s)	435
Sau96I	GGNCC	2 cut(s)	272, 304
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	3 cut(s)	275, 315, 331
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	8 cut(s)	159, 253, 298, 306, 316, 332, 369, 583
SexAI	ACCWGGT	1 cut(s)	313
SfuI	TTCGAA	1 cut(s)	33
SinI	GGWCC	1 cut(s)	304
Sse9I	AATT	6 cut(s)	35, 339, 503, 531, 552, 613
SsiI	CCGC	3 cut(s)	425, 434, 484
StyD4I	CCNGG	3 cut(s)	273, 313, 329
StyI	CCWWGG	2 cut(s)	75, 375
TaaI	ACNGT	1 cut(s)	285
TaqI	TCGA	2 cut(s)	33, 396
TasI	AATT	6 cut(s)	35, 339, 503, 531, 552, 613
TatI	WGTACW	1 cut(s)	462
TauI	GCSGC	1 cut(s)	437
TfiI	GAWTC	3 cut(s)	257, 266, 493
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TspDTI	ATGAA	3 cut(s)	279, 436, 578
VpaK11BI	GGWCC	1 cut(s)	304
VspI	ATTAAT	1 cut(s)	534
XagI	CCTNNNNNAGG	1 cut(s)	318
XapI	RAATTY	2 cut(s)	35, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.