Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040499.1

Orthogroup ID

OG0007742

Physical Location & Seq

Genomic Coordinates Forward (+)

1210 .. 1698

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040499.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atggtgggcgaccaattcgatccagaaggcttggaattgaagcactgggacaaaatctccaaaacccaattcaaggaatggtcaatggtagccatcagagactccaactcctccgttttccctccaattaatcacgaaaacctccacctcccgacctccccatcactgtcgtcttcttcctcctcctcgctctcgtcgttttcgccgtccgattccgacgaatcgggcccggtttcgccgaagaagcccgatgcccaggtcggaaaatgcggcgaattgaggagctgggtgggttttggggttgggttactgcgctctaaggttttggggattggttcgttgattgggtgggacaaagtttggtgctttggttctggggcgggcgttgtggcggtggtgtttatggtgtggtcgttttacttgcgagtgaggcggaggcggtatcggaagcgttccgatttgattatcaagcagaaagatgaggtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

18.02

Weight (kDa)

9.36

Isoelectric Point (pI)

54.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07730 AT5G61360
fragaria_vesca	FvH4_5g14530
malus_domestica	MD06G1197700.v1.1 MD14G1205100.v1.1
prunus_persica	Prupe.5G198500_v2.0.a1
pyrus_communis	pycom06g17470 pycom14g16950
rosa_chinensis	RchiOBHm_Chr7g0182121
rosa_laevigata	RLG00000005149
rosa_multiflora	Rmu_co8282759.1_g000001 Rmu_sc0003511.1_g000005 Rmu_sc0040499.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271490 Rroxscaffold_5G00360990
rosa_rugosa	Rorug06G0445800
rosa_samantha	Rh4BG277900 Rh7AG048500 Rh7BG048300 Rh7CG049800 Rh7DG047700
rosa_wichuraiana	Rw0G021040 Rw2G026110 Rw7G003960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	270, 380, 392, 433, 439
AclWI	GGATC	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	73
AgsI	TTSAA	2 cut(s)	40, 73
AjnI	CCWGG	1 cut(s)	255
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
AluBI	AGCT	1 cut(s)	285
AluI	AGCT	1 cut(s)	285
Alw26I	GTCTC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	14
AoxI	GGCC	1 cut(s)	226
ApaI	GGGCCC	1 cut(s)	230
AseI	ATTAAT	1 cut(s)	129
AspLEI	GCGC	1 cut(s)	315
AspS9I	GGNCC	2 cut(s)	226, 227
AsuC2I	CCSGG	1 cut(s)	230
BaeGI	GKGCMC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	230
BbsI	GAAGAC	1 cut(s)	165
BccI	CCATC	2 cut(s)	101, 169
BceAI	ACGGC	1 cut(s)	190
BciT130I	CCWGG	1 cut(s)	257
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	93
BisI	GCNGC	1 cut(s)	271
BlsI	GCNGC	1 cut(s)	272
Bme1390I	CCNGG	2 cut(s)	230, 257
BmgT120I	GGNCC	2 cut(s)	226, 227
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	2 cut(s)	230, 257
BmrI	ACTGGG	1 cut(s)	55
BmsI	GCATC	1 cut(s)	241
BmuI	ACTGGG	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	165
BpuMI	CCSGG	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	255
BsaXI	ACNNNNNCTCC	4 cut(s)	41, 71, 92, 122
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	50
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseNI	ACTGG	1 cut(s)	50
BseRI	GAGGAG	4 cut(s)	100, 172, 175, 295
BseSI	GKGCMC	1 cut(s)	230
BseYI	CCCAGC	1 cut(s)	285
BshFI	GGCC	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	2 cut(s)	62, 365
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	93
BsmFI	GGGAC	2 cut(s)	62, 365
BsnI	GGCC	1 cut(s)	228
Bsp120I	GGGCCC	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	5 cut(s)	270, 380, 392, 433, 439
BspANI	GGCC	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	228
BspPI	GGATC	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	1 cut(s)	19
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	1 cut(s)	318
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	1 cut(s)	22
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	2 cut(s)	244, 430
BstNI	CCWGG	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	228, 255
BstSLI	GKGCMC	1 cut(s)	230
BstV2I	GAAGAC	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	228
BtsIMutI	CAGTG	2 cut(s)	43, 164
Cac8I	GCNNGC	1 cut(s)	382
CfoI	GCGC	1 cut(s)	315
Cfr13I	GGNCC	2 cut(s)	226, 227
CviJI	RGCY	5 cut(s)	30, 92, 228, 247, 285
CviKI_1	RGCY	5 cut(s)	30, 92, 228, 247, 285
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
EciI	GGCGGA	1 cut(s)	448
Eco24I	GRGCYC	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	255
EcoT38I	GRGCYC	1 cut(s)	230
FaiI	YATR	1 cut(s)	404
FaqI	GGGAC	2 cut(s)	62, 365
FauI	CCCGC	1 cut(s)	373
Fnu4HI	GCNGC	1 cut(s)	271
FriOI	GRGCYC	1 cut(s)	230
Fsp4HI	GCNGC	1 cut(s)	271
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	1 cut(s)	271
GsaI	CCCAGC	1 cut(s)	289
HaeIII	GGCC	1 cut(s)	228
HapII	CCGG	1 cut(s)	230
HhaI	GCGC	1 cut(s)	315
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HinfI	GANTC	3 cut(s)	101, 212, 221
HpaII	CCGG	1 cut(s)	230
Hpy188I	TCNGA	7 cut(s)	98, 211, 217, 263, 447, 457, 488
Hpy188III	TCNNGA	3 cut(s)	23, 134, 151
Hpy99I	CGWCG	2 cut(s)	199, 221
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	1 cut(s)	168
HpyF10VI	GCNNNNNNNGC	2 cut(s)	244, 430
HpyF3I	CTNAG	1 cut(s)	318
HspAI	GCGC	1 cut(s)	313
Kzo9I	GATC	1 cut(s)	19
LmnI	GCTCC	1 cut(s)	282
LpnPI	CCDG	7 cut(s)	31, 36, 242, 243, 269, 271, 360
LweI	GCATC	1 cut(s)	241
MaeIII	GTNAC	1 cut(s)	306
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	3 cut(s)	165, 168, 253
MhlI	GDGCHC	1 cut(s)	230
MluCI	AATT	5 cut(s)	14, 35, 68, 126, 275
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	3 cut(s)	129, 240, 241
MseI	TTAA	1 cut(s)	129
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	2 cut(s)	230, 257
MvaI	CCWGG	1 cut(s)	257
MwoI	GCNNNNNNNGC	2 cut(s)	244, 430
NciI	CCSGG	1 cut(s)	230
NdeII	GATC	1 cut(s)	19
NlaIV	GGNNCC	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	2 cut(s)	194, 203
PfeI	GAWTC	2 cut(s)	212, 221
PkrI	GCNGC	1 cut(s)	272
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
PshBI	ATTAAT	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	255
PspFI	CCCAGC	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	228
PspOMI	GGGCCC	1 cut(s)	226
PspPI	GGNCC	2 cut(s)	226, 227
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	1 cut(s)	271
Sau3AI	GATC	1 cut(s)	19
Sau96I	GGNCC	2 cut(s)	226, 227
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	2 cut(s)	230, 257
SduI	GDGCHC	1 cut(s)	230
SetI	ASST	7 cut(s)	144, 150, 158, 261, 287, 324, 486
SfaNI	GCATC	1 cut(s)	241
Sse9I	AATT	5 cut(s)	14, 35, 68, 126, 275
SsiI	CCGC	5 cut(s)	270, 380, 392, 433, 439
StyD4I	CCNGG	2 cut(s)	228, 255
TaaI	ACNGT	1 cut(s)	168
TaqI	TCGA	1 cut(s)	18
TasI	AATT	5 cut(s)	14, 35, 68, 126, 275
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	2 cut(s)	212, 221
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	2 cut(s)	50, 171
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	2 cut(s)	50, 171
VspI	ATTAAT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.