Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007742

Physical Location & Seq

Genomic Coordinates Forward (+)

24670792 .. 24671868

Gene Structure 1077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G61360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGTGGAAGGTGAAGAACAGAGGAGGATCACACACTTGGATCTGAGAAACGAGCCCCAGTTTCCAATGGTTTTCGTTAGAGAATCGACTTGTTTCGCTAAGGACGATCTCGCTATCTTCCCGCCGATCAACCACGAGAATCTCTACGTCAACGGACTCGAATCTCCGTCGGTATCATCCTCTTCTTCATCTTCCTCGTCGAGACTCTCAGATTCGTCCTTCTCTCCGTCCGATTCAGACGAACAATTTCAATTTAGCCGGAAATCGCATTCTCAGCCATCGGAAGATGTCGGGAAATCTCCGTGGAAATCCGTAATTGAGATTGATATTATCCAAGGTTGGTGGAAGATTCTTCTCGCTCGAGTAATGTCAAATTTCCAGAATTTGGTTACCTGCTTCTCCAGAAATAGTCTCTGTTCCTTCTCAAAGACTCTCCGGTCATTTTATTCGGTTATGGTCATATTCCTTTGGTGGTGGAAGCGTAACCGAACTCGCCGACGACTTGAAAAAGGTGAAATCATCGCTGCTCATCTCAGAGATACAATCAAAGAGAGAGACGAGAGAATAGCTCAACTCTTGCATCAGATTACTCAGATGAACGAGTTACTTGTAAAAATAACACATTCCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

24.47

Weight (kDa)

8.48

Isoelectric Point (pI)

63.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07730 AT5G61360
fragaria_vesca	FvH4_5g14530
malus_domestica	MD06G1197700.v1.1 MD14G1205100.v1.1
prunus_persica	Prupe.5G198500_v2.0.a1
pyrus_communis	pycom06g17470 pycom14g16950
rosa_chinensis	RchiOBHm_Chr7g0182121
rosa_laevigata	RLG00000005149
rosa_multiflora	Rmu_co8282759.1_g000001 Rmu_sc0003511.1_g000005 Rmu_sc0040499.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271490 Rroxscaffold_5G00360990
rosa_rugosa	Rorug06G0445800
rosa_samantha	Rh4BG277900 Rh7AG048500 Rh7BG048300 Rh7CG049800 Rh7DG047700
rosa_wichuraiana	Rw0G021040 Rw2G026110 Rw7G003960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	436
Acc36I	ACCTGC	1 cut(s)	401
AccB7I	CCANNNNNTGG	1 cut(s)	385
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	2 cut(s)	35, 48
AcsI	RAATTY	2 cut(s)	373, 382
AfiI	CCNNNNNNNGG	1 cut(s)	385
AgsI	TTSAA	2 cut(s)	251, 506
AluBI	AGCT	1 cut(s)	569
AluI	AGCT	1 cut(s)	569
Alw26I	GTCTC	3 cut(s)	196, 416, 549
AlwI	GGATC	2 cut(s)	35, 48
Ama87I	CYCGRG	1 cut(s)	360
ApeKI	GCWGC	1 cut(s)	524
ApoI	RAATTY	2 cut(s)	373, 382
Asp700I	GAANNNNTTC	1 cut(s)	246
AsuHPI	GGTGA	2 cut(s)	23, 524
AvaI	CYCGRG	1 cut(s)	360
BanII	GRGCYC	1 cut(s)	57
BauI	CACGAG	1 cut(s)	134
BbvI	GCAGC	1 cut(s)	511
BccI	CCATC	1 cut(s)	286
BcoDI	GTCTC	3 cut(s)	196, 416, 549
BfuAI	ACCTGC	1 cut(s)	401
BisI	GCNGC	1 cut(s)	525
BlsI	GCNGC	1 cut(s)	526
BmeT110I	CYCGRG	1 cut(s)	360
BmrI	ACTGGG	1 cut(s)	52
BmsI	GCATC	1 cut(s)	589
BmuI	ACTGGG	1 cut(s)	52
BplI	GAGNNNNNCTC	2 cut(s)	553, 585
BpmI	CTGGAG	1 cut(s)	385
Bpu10I	CCTNAGC	1 cut(s)	99
BsaJI	CCNNGG	2 cut(s)	302, 334
BsaWI	WCCGGW	1 cut(s)	435
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
Bse1I	ACTGG	1 cut(s)	58
BseDI	CCNNGG	2 cut(s)	302, 334
BseGI	GGATG	1 cut(s)	176
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseMII	CTCAG	5 cut(s)	35, 222, 287, 547, 605
BseNI	ACTGG	1 cut(s)	58
BseRI	GAGGAG	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	511
BsiHKCI	CYCGRG	1 cut(s)	360
BsiSI	CCGG	2 cut(s)	259, 436
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmAI	GTCTC	3 cut(s)	196, 416, 549
BsmBI	CGTCTC	1 cut(s)	549
BsmI	GAATGC	1 cut(s)	268
BsoBI	CYCGRG	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	4 cut(s)	27, 40, 106, 126
BspACI	CCGC	1 cut(s)	122
BspCNI	CTCAG	5 cut(s)	36, 221, 286, 546, 604
BspMI	ACCTGC	1 cut(s)	401
BspPI	GGATC	2 cut(s)	35, 48
BsrI	ACTGG	1 cut(s)	58
BssECI	CCNNGG	2 cut(s)	302, 334
BssMI	GATC	4 cut(s)	27, 40, 106, 126
BssSI	CACGAG	1 cut(s)	134
BssT1I	CCWWGG	1 cut(s)	334
Bst2BI	CACGAG	1 cut(s)	134
Bst6I	CTCTTC	1 cut(s)	187
BstDEI	CTNAG	6 cut(s)	44, 99, 208, 273, 533, 591
BstDSI	CCRYGG	1 cut(s)	302
BstEII	GGTNACC	1 cut(s)	388
BstF5I	GGATG	1 cut(s)	176
BstKTI	GATC	4 cut(s)	30, 43, 109, 129
BstMAI	GTCTC	3 cut(s)	196, 416, 549
BstMBI	GATC	4 cut(s)	27, 40, 106, 126
BstMWI	GCNNNNNNNGC	1 cut(s)	274
BstPI	GGTNACC	1 cut(s)	388
BstV1I	GCAGC	1 cut(s)	511
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BtgI	CCRYGG	1 cut(s)	302
BtgZI	GCGATG	1 cut(s)	505
BtsCI	GGATG	1 cut(s)	176
BveI	ACCTGC	1 cut(s)	401
CspCI	CAANNNNNGTGG	2 cut(s)	323, 358
CviJI	RGCY	4 cut(s)	55, 258, 277, 569
CviKI_1	RGCY	4 cut(s)	55, 258, 277, 569
DdeI	CTNAG	6 cut(s)	44, 99, 208, 273, 533, 591
DpnI	GATC	4 cut(s)	29, 42, 108, 128
DpnII	GATC	4 cut(s)	27, 40, 106, 126
DrdI	GACNNNNNNGTC	1 cut(s)	436
DseDI	GACNNNNNNGTC	1 cut(s)	436
Eam1104I	CTCTTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	334
Eco24I	GRGCYC	1 cut(s)	57
Eco88I	CYCGRG	1 cut(s)	360
Eco91I	GGTNACC	1 cut(s)	388
EcoO65I	GGTNACC	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	334
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	334
Esp3I	CGTCTC	1 cut(s)	549
FaiI	YATR	2 cut(s)	455, 461
FauI	CCCGC	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	525
FokI	GGATG	1 cut(s)	163
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	525
GluI	GCNGC	1 cut(s)	525
GsuI	CTGGAG	1 cut(s)	385
HapII	CCGG	2 cut(s)	259, 436
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	9 cut(s)	83, 139, 156, 161, 204, 212, 233, 349, 430
HpaII	CCGG	2 cut(s)	259, 436
HphI	GGTGA	2 cut(s)	23, 524
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	8 cut(s)	45, 211, 232, 238, 283, 536, 585, 594
Hpy188III	TCNNGA	4 cut(s)	201, 292, 379, 402
Hpy8I	GTNNAC	1 cut(s)	151
Hpy99I	CGWCG	3 cut(s)	172, 202, 501
HpyAV	CCTTC	2 cut(s)	229, 430
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	1 cut(s)	580
HpyF10VI	GCNNNNNNNGC	1 cut(s)	274
HpyF3I	CTNAG	6 cut(s)	44, 99, 208, 273, 533, 591
HpySE526I	ACGT	1 cut(s)	147
Kzo9I	GATC	4 cut(s)	27, 40, 106, 126
LpnPI	CCDG	6 cut(s)	71, 272, 392, 406, 415, 449
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	1 cut(s)	589
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	3 cut(s)	388, 482, 603
MalI	GATC	4 cut(s)	29, 42, 108, 128
MboI	GATC	4 cut(s)	27, 40, 106, 126
MboII	GAAGA	8 cut(s)	26, 109, 174, 177, 183, 296, 344, 358
MfeI	CAATTG	1 cut(s)	628
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	6 cut(s)	245, 251, 315, 373, 382, 628
MlyI	GAGTC	3 cut(s)	150, 198, 424
MnlI	CCTC	4 cut(s)	15, 18, 190, 205
MroXI	GAANNNNTTC	1 cut(s)	246
MspI	CCGG	2 cut(s)	259, 436
MunI	CAATTG	1 cut(s)	628
Mva1269I	GAATGC	1 cut(s)	268
MwoI	GCNNNNNNNGC	1 cut(s)	274
NdeII	GATC	4 cut(s)	27, 40, 106, 126
PaeR7I	CTCGAG	1 cut(s)	360
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PctI	GAATGC	1 cut(s)	268
PdmI	GAANNNNTTC	1 cut(s)	246
PfeI	GAWTC	6 cut(s)	83, 139, 161, 212, 233, 349
PflMI	CCANNNNNTGG	1 cut(s)	385
PkrI	GCNGC	1 cut(s)	526
PleI	GAGTC	3 cut(s)	150, 198, 424
PpsI	GAGTC	3 cut(s)	150, 198, 424
PspEI	GGTNACC	1 cut(s)	388
PspXI	VCTCGAGB	1 cut(s)	360
PsuI	RGATCY	1 cut(s)	40
SatI	GCNGC	1 cut(s)	525
Sau3AI	GATC	4 cut(s)	27, 40, 106, 126
SchI	GAGTC	3 cut(s)	150, 198, 424
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	6 cut(s)	13, 150, 340, 395, 514, 571
SfaNI	GCATC	1 cut(s)	589
Sfr274I	CTCGAG	1 cut(s)	360
SlaI	CTCGAG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	360
SmoI	CTYRAG	1 cut(s)	360
Sse9I	AATT	6 cut(s)	245, 251, 315, 373, 382, 628
SsiI	CCGC	1 cut(s)	122
StyI	CCWWGG	1 cut(s)	334
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	4 cut(s)	86, 159, 200, 361
TasI	AATT	6 cut(s)	245, 251, 315, 373, 382, 628
TfiI	GAWTC	6 cut(s)	83, 139, 161, 212, 233, 349
TseI	GCWGC	1 cut(s)	524
TspDTI	ATGAA	2 cut(s)	177, 611
TspGWI	ACGGA	5 cut(s)	156, 168, 216, 291, 301
Van91I	CCANNNNNTGG	1 cut(s)	385
XapI	RAATTY	2 cut(s)	373, 382
XhoI	CTCGAG	1 cut(s)	360
XmnI	GAANNNNTTC	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.