Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007742

Physical Location & Seq

Genomic Coordinates Forward (+)

21423027 .. 21423900

Gene Structure 874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g17470.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCGGGCGAGCACTTCGATTCAGCGAGCTTCATATTCAAACGCATCCCCAAAACCCAATTCAAAGAATGGTCCATGGTCGCCATCAGAGACTCTCCCTCACCCGACACTGACTCCTCCGTCTTCCCTCCAATCAACCACGAAAATCTCCACCCTCCATCACAACCTGATCAAAAGCACCCAGACCCATTATCGCCATCCCCGTCGTCTCCGTTGCTATCGTCGTCTTCGTCGTCGTCGCTGTCGTCATTCTCACCGTCCGATTCCGATGAACCGGGCCCGGTTTCGCCGCTTCCGTCCGTTGCCGAGGTCCGGAAACCCGGCGAATTCTCCACCTGGGTAGGAATTGGATTTGGGTTACTGCGTTCCAAGCTTTCTGCTATGGCTTCCTCATCTGGGTTCGATAAAGTTTGGAGCTTTGCCTCCGGCGCAGGAATGGCGGGTGTGGTGTTCGTGTTATGGTCCTTGTTCTTGCGGGCTCGGCGAAGGCGGTATCGGAATCGTTTGATGTTGATTAGCAAAGAGAAAGACGAGAAAATAAATAAACTGCTGCACCAAATCGCTCAGATGAACGAAGTTCTAGTCGCTCGGCATAGAGTTCTGGCATCGAAACTGGCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

22.79

Weight (kDa)

9.79

Isoelectric Point (pI)

59.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07730 AT5G61360
fragaria_vesca	FvH4_5g14530
malus_domestica	MD06G1197700.v1.1 MD14G1205100.v1.1
prunus_persica	Prupe.5G198500_v2.0.a1
pyrus_communis	pycom06g17470 pycom14g16950
rosa_chinensis	RchiOBHm_Chr7g0182121
rosa_laevigata	RLG00000005149
rosa_multiflora	Rmu_co8282759.1_g000001 Rmu_sc0003511.1_g000005 Rmu_sc0040499.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271490 Rroxscaffold_5G00360990
rosa_rugosa	Rorug06G0445800
rosa_samantha	Rh4BG277900 Rh7AG048500 Rh7BG048300 Rh7CG049800 Rh7DG047700
rosa_wichuraiana	Rw0G021040 Rw2G026110 Rw7G003960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
AccIII	TCCGGA	1 cut(s)	312
AciI	CCGC	5 cut(s)	5, 290, 440, 475, 490
AcsI	RAATTY	1 cut(s)	326
AfiI	CCNNNNNNNGG	2 cut(s)	312, 396
AgsI	TTSAA	2 cut(s)	40, 64
AjnI	CCWGG	1 cut(s)	335
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	3 cut(s)	30, 373, 417
AluI	AGCT	3 cut(s)	30, 373, 417
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	2 cut(s)	84, 213
Aor13HI	TCCGGA	1 cut(s)	312
AoxI	GGCC	1 cut(s)	277
ApaI	GGGCCC	1 cut(s)	281
ApeKI	GCWGC	1 cut(s)	550
ApoI	RAATTY	1 cut(s)	326
ArsI	GACNNNNNNTTYG	2 cut(s)	567, 599
AspLEI	GCGC	1 cut(s)	431
AspS9I	GGNCC	5 cut(s)	72, 277, 278, 310, 462
AsuC2I	CCSGG	3 cut(s)	276, 281, 321
AsuHPI	GGTGA	2 cut(s)	93, 246
AvaII	GGWCC	3 cut(s)	72, 310, 462
BaeGI	GKGCMC	1 cut(s)	281
BanII	GRGCYC	2 cut(s)	281, 481
BbsI	GAAGAC	2 cut(s)	115, 219
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	537
BccI	CCATC	3 cut(s)	92, 166, 205
BciT130I	CCWGG	1 cut(s)	337
BclI	TGATCA	1 cut(s)	169
BcnI	CCSGG	3 cut(s)	276, 281, 321
BcoDI	GTCTC	2 cut(s)	84, 213
BfaI	CTAG	1 cut(s)	581
BisI	GCNGC	2 cut(s)	290, 551
BlsI	GCNGC	2 cut(s)	291, 552
Bme1390I	CCNGG	4 cut(s)	276, 281, 321, 337
Bme18I	GGWCC	3 cut(s)	72, 310, 462
BmgT120I	GGNCC	5 cut(s)	72, 277, 278, 310, 462
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	4 cut(s)	276, 281, 321, 337
BmsI	GCATC	2 cut(s)	54, 614
BpiI	GAAGAC	2 cut(s)	115, 219
BpuMI	CCSGG	3 cut(s)	276, 281, 321
BsaJI	CCNNGG	3 cut(s)	75, 306, 336
BsaWI	WCCGGW	1 cut(s)	312
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	2 cut(s)	312, 396
Bse1I	ACTGG	1 cut(s)	618
BseAI	TCCGGA	1 cut(s)	312
BseBI	CCWGG	1 cut(s)	337
BseDI	CCNNGG	3 cut(s)	75, 306, 336
BseGI	GGATG	2 cut(s)	45, 197
BseLI	CCNNNNNNNGG	2 cut(s)	312, 396
BseMII	CTCAG	1 cut(s)	578
BseNI	ACTGG	1 cut(s)	618
BseRI	GAGGAG	1 cut(s)	106
BseSI	GKGCMC	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	537
BsgI	GTGCAG	1 cut(s)	536
BshFI	GGCC	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	5 cut(s)	275, 281, 313, 321, 426
BslI	CCNNNNNNNGG	2 cut(s)	312, 396
BsmAI	GTCTC	2 cut(s)	84, 213
BsmBI	CGTCTC	1 cut(s)	213
BsnI	GGCC	1 cut(s)	279
Bsp120I	GGGCCC	1 cut(s)	277
Bsp1286I	GDGCHC	3 cut(s)	15, 281, 481
Bsp13I	TCCGGA	1 cut(s)	312
Bsp143I	GATC	1 cut(s)	169
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	5 cut(s)	5, 290, 440, 475, 490
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	1 cut(s)	577
BspEI	TCCGGA	1 cut(s)	312
BspLI	GGNNCC	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	618
BssECI	CCNNGG	3 cut(s)	75, 306, 336
BssMI	GATC	1 cut(s)	169
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	337
Bst4CI	ACNGT	1 cut(s)	258
BstC8I	GCNNGC	4 cut(s)	7, 11, 28, 477
BstDEI	CTNAG	1 cut(s)	564
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	2 cut(s)	45, 197
BstHHI	GCGC	1 cut(s)	431
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	2 cut(s)	84, 213
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	4 cut(s)	370, 428, 437, 481
BstNI	CCWGG	1 cut(s)	337
BstSCI	CCNGG	4 cut(s)	274, 279, 319, 335
BstSLI	GKGCMC	1 cut(s)	281
BstV1I	GCAGC	1 cut(s)	537
BstV2I	GAAGAC	2 cut(s)	115, 219
BsuRI	GGCC	1 cut(s)	279
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	2 cut(s)	45, 197
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	4 cut(s)	7, 11, 28, 477
CfoI	GCGC	1 cut(s)	431
Cfr13I	GGNCC	5 cut(s)	72, 277, 278, 310, 462
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	7 cut(s)	30, 279, 373, 386, 417, 479, 617
CviKI_1	RGCY	7 cut(s)	30, 279, 373, 386, 417, 479, 617
DdeI	CTNAG	1 cut(s)	564
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	2 cut(s)	281, 481
Eco47I	GGWCC	3 cut(s)	72, 310, 462
EcoRI	GAATTC	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	335
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	2 cut(s)	281, 481
ErhI	CCWWGG	1 cut(s)	75
Esp3I	CGTCTC	1 cut(s)	213
FaeI	CATG	1 cut(s)	79
FaiI	YATR	5 cut(s)	35, 77, 383, 460, 594
FatI	CATG	1 cut(s)	75
FauI	CCCGC	2 cut(s)	433, 468
FbaI	TGATCA	1 cut(s)	169
Fnu4HI	GCNGC	2 cut(s)	290, 551
FokI	GGATG	2 cut(s)	32, 184
FriOI	GRGCYC	2 cut(s)	281, 481
Fsp4HI	GCNGC	2 cut(s)	290, 551
FspBI	CTAG	1 cut(s)	581
GlaI	GCGC	1 cut(s)	430
GluI	GCNGC	2 cut(s)	290, 551
HaeIII	GGCC	1 cut(s)	279
HapII	CCGG	5 cut(s)	275, 281, 313, 321, 426
HhaI	GCGC	1 cut(s)	431
Hin1II	CATG	1 cut(s)	79
Hin6I	GCGC	1 cut(s)	429
HinP1I	GCGC	1 cut(s)	429
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	5 cut(s)	20, 92, 113, 263, 499
HpaII	CCGG	5 cut(s)	275, 281, 313, 321, 426
HphI	GGTGA	2 cut(s)	93, 246
Hpy188I	TCNGA	5 cut(s)	89, 262, 268, 498, 567
Hpy188III	TCNNGA	1 cut(s)	313
Hpy99I	CGWCG	5 cut(s)	208, 226, 235, 238, 241
HpyAV	CCTTC	1 cut(s)	480
HpyCH4III	ACNGT	1 cut(s)	258
HpyCH4V	TGCA	1 cut(s)	553
HpyF10VI	GCNNNNNNNGC	4 cut(s)	370, 428, 437, 481
HpyF3I	CTNAG	1 cut(s)	564
Hsp92II	CATG	1 cut(s)	79
HspAI	GCGC	1 cut(s)	429
Kpn2I	TCCGGA	1 cut(s)	312
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	414
Lsp1109I	GCAGC	1 cut(s)	537
LweI	GCATC	2 cut(s)	54, 614
MaeI	CTAG	1 cut(s)	581
MaeIII	GTNAC	1 cut(s)	357
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	2 cut(s)	115, 219
MhlI	GDGCHC	3 cut(s)	15, 281, 481
MluCI	AATT	4 cut(s)	59, 326, 345, 619
MlyI	GAGTC	2 cut(s)	86, 107
MnlI	CCTC	7 cut(s)	109, 127, 138, 165, 301, 400, 433
MroI	TCCGGA	1 cut(s)	312
MspI	CCGG	5 cut(s)	275, 281, 313, 321, 426
MspR9I	CCNGG	4 cut(s)	276, 281, 321, 337
MvaI	CCWGG	1 cut(s)	337
MwoI	GCNNNNNNNGC	4 cut(s)	370, 428, 437, 481
NciI	CCSGG	3 cut(s)	276, 281, 321
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	1 cut(s)	279
NmeAIII	GCCGAG	3 cut(s)	331, 460, 568
PcsI	WCGNNNNNNNCGW	5 cut(s)	200, 227, 230, 242, 293
PfeI	GAWTC	3 cut(s)	20, 263, 499
PkrI	GCNGC	2 cut(s)	291, 552
PleI	GAGTC	2 cut(s)	86, 107
PpsI	GAGTC	2 cut(s)	86, 107
Psp6I	CCWGG	1 cut(s)	335
PspGI	CCWGG	1 cut(s)	335
PspN4I	GGNNCC	1 cut(s)	279
PspOMI	GGGCCC	1 cut(s)	277
PspPI	GGNCC	5 cut(s)	72, 277, 278, 310, 462
SatI	GCNGC	2 cut(s)	290, 551
Sau3AI	GATC	1 cut(s)	169
Sau96I	GGNCC	5 cut(s)	72, 277, 278, 310, 462
SchI	GAGTC	2 cut(s)	86, 107
ScrFI	CCNGG	4 cut(s)	276, 281, 321, 337
SduI	GDGCHC	3 cut(s)	15, 281, 481
SetI	ASST	6 cut(s)	32, 169, 312, 338, 375, 419
SfaNI	GCATC	2 cut(s)	54, 614
SinI	GGWCC	3 cut(s)	72, 310, 462
Sse9I	AATT	4 cut(s)	59, 326, 345, 619
SsiI	CCGC	5 cut(s)	5, 290, 440, 475, 490
SspMI	CTAG	1 cut(s)	581
StyD4I	CCNGG	4 cut(s)	274, 279, 319, 335
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	258
TaqI	TCGA	3 cut(s)	18, 402, 608
TasI	AATT	4 cut(s)	59, 326, 345, 619
TauI	GCSGC	1 cut(s)	292
TfiI	GAWTC	3 cut(s)	20, 263, 499
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	1 cut(s)	550
TspDTI	ATGAA	3 cut(s)	22, 285, 584
TspGWI	ACGGA	4 cut(s)	109, 201, 285, 289
TspRI	CASTG	1 cut(s)	115
VpaK11BI	GGWCC	3 cut(s)	72, 310, 462
XapI	RAATTY	1 cut(s)	326
XspI	CTAG	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.