Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0007742

Physical Location & Seq

Genomic Coordinates Reverse (-)

40165040 .. 40168305

Gene Structure 3266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G026110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGTGGGCGACCAATTCGATCCAGAAGGCTTGGAATTGAAGCACTGGGAGAAAATCTCCAAAACCATGTTCAAGGAATGGTTAATGGTAGCCACCAGAGACTCCAACTGCTCCGTCTTCCCTCCAATTAATCATGAAACCCCCACCTCCCAACCTCCCCATCACTATCATCTTCTTCCTCCTTGTTGTGAAATTTTAATTAAAACTCGCAAGCGCCTGAATCGTCCACATCACTCCTCGTCGCTCTCAACGTTTTTGCCTTATGATTCCCACGAATTTGGCCCAGTTTCTCCGGAGAAGGCTGATACCCAGGTCGGAAAATGTGGCGAATTGAGGAGCTGGGTGGGTTTTGGAGTTGGGTTAGTGCATTCTAAGATTTTGGGGATTGGTTCATTGATTGGGTGGGAAAAAGTTTGGTGCTTTGGTTCTAGGGCAGGCATTGTGGCGGTGGTGTTTGTGTATCGGAAGCGTTCCGATTTGATTATCAAACAGAAAGATGAACATATAATCTCGACCATTGTACATAGCCTTTACCACTTCAATTTATGTCCTAAAATGATTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

21.47

Weight (kDa)

8.91

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07730 AT5G61360
fragaria_vesca	FvH4_5g14530
malus_domestica	MD06G1197700.v1.1 MD14G1205100.v1.1
prunus_persica	Prupe.5G198500_v2.0.a1
pyrus_communis	pycom06g17470 pycom14g16950
rosa_chinensis	RchiOBHm_Chr7g0182121
rosa_laevigata	RLG00000005149
rosa_multiflora	Rmu_co8282759.1_g000001 Rmu_sc0003511.1_g000005 Rmu_sc0040499.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271490 Rroxscaffold_5G00360990
rosa_rugosa	Rorug06G0445800
rosa_samantha	Rh4BG277900 Rh7AG048500 Rh7BG048300 Rh7CG049800 Rh7DG047700
rosa_wichuraiana	Rw0G021040 Rw2G026110 Rw7G003960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	292
AciI	CCGC	1 cut(s)	446
AclI	AACGTT	1 cut(s)	251
AclWI	GGATC	1 cut(s)	14
AcsI	RAATTY	2 cut(s)	192, 275
AfaI	GTAC	1 cut(s)	522
AgsI	TTSAA	3 cut(s)	40, 73, 541
AjnI	CCWGG	1 cut(s)	309
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
AluBI	AGCT	1 cut(s)	339
AluI	AGCT	1 cut(s)	339
Alw26I	GTCTC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	14
Aor13HI	TCCGGA	1 cut(s)	292
AoxI	GGCC	1 cut(s)	280
ApoI	RAATTY	2 cut(s)	192, 275
AseI	ATTAAT	1 cut(s)	129
AspLEI	GCGC	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	281
BaeI	ACNNNNGTAYC	2 cut(s)	297, 330
BbsI	GAAGAC	1 cut(s)	109
BccI	CCATC	1 cut(s)	168
BciT130I	CCWGG	1 cut(s)	311
BcoDI	GTCTC	1 cut(s)	93
BfaI	CTAG	1 cut(s)	429
BfoI	RGCGCY	1 cut(s)	217
Bme1390I	CCNGG	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	281
BmrFI	CCNGG	1 cut(s)	311
BmrI	ACTGGG	2 cut(s)	55, 278
BmuI	ACTGGG	2 cut(s)	55, 278
BpiI	GAAGAC	1 cut(s)	109
BplI	GAGNNNNNCTC	2 cut(s)	41, 73
BsaJI	CCNNGG	1 cut(s)	309
BsaWI	WCCGGW	1 cut(s)	292
Bse1I	ACTGG	2 cut(s)	50, 284
BseAI	TCCGGA	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	1 cut(s)	309
BseNI	ACTGG	2 cut(s)	50, 284
BseRI	GAGGAG	2 cut(s)	226, 349
BseYI	CCCAGC	1 cut(s)	339
BshFI	GGCC	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	293
BsmAI	GTCTC	1 cut(s)	93
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	1 cut(s)	282
Bsp13I	TCCGGA	1 cut(s)	292
Bsp1407I	TGTACA	1 cut(s)	520
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	1 cut(s)	446
BspANI	GGCC	1 cut(s)	282
BspEI	TCCGGA	1 cut(s)	292
BspHI	TCATGA	1 cut(s)	133
BspPI	GGATC	1 cut(s)	14
BsrGI	TGTACA	1 cut(s)	520
BsrI	ACTGG	2 cut(s)	50, 284
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	1 cut(s)	19
Bst2UI	CCWGG	1 cut(s)	311
BstAUI	TGTACA	1 cut(s)	520
BstC8I	GCNNGC	2 cut(s)	212, 436
BstDEI	CTNAG	1 cut(s)	372
BstH2I	RGCGCY	1 cut(s)	217
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	1 cut(s)	22
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	1 cut(s)	19
BstNI	CCWGG	1 cut(s)	311
BstSCI	CCNGG	1 cut(s)	309
BstV2I	GAAGAC	1 cut(s)	109
BstXI	CCANNNNNNTGG	1 cut(s)	278
BsuRI	GGCC	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	212, 436
CciI	TCATGA	1 cut(s)	133
CfoI	GCGC	1 cut(s)	216
Cfr13I	GGNCC	1 cut(s)	281
Csp6I	GTAC	1 cut(s)	521
CviAII	CATG	2 cut(s)	67, 134
CviJI	RGCY	6 cut(s)	30, 92, 282, 302, 339, 528
CviKI_1	RGCY	6 cut(s)	30, 92, 282, 302, 339, 528
CviQI	GTAC	1 cut(s)	521
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	309
FaeI	CATG	2 cut(s)	70, 137
FaiI	YATR	7 cut(s)	68, 135, 264, 504, 506, 525, 547
FatI	CATG	2 cut(s)	66, 133
FspBI	CTAG	1 cut(s)	429
GlaI	GCGC	1 cut(s)	215
GsaI	CCCAGC	1 cut(s)	343
HaeII	RGCGCY	1 cut(s)	217
HaeIII	GGCC	1 cut(s)	282
HapII	CCGG	1 cut(s)	293
HhaI	GCGC	1 cut(s)	216
Hin1II	CATG	2 cut(s)	70, 137
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HinfI	GANTC	3 cut(s)	101, 220, 266
HpaII	CCGG	1 cut(s)	293
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	3 cut(s)	317, 465, 475
Hpy188III	TCNNGA	4 cut(s)	23, 134, 293, 511
Hpy8I	GTNNAC	1 cut(s)	227
Hpy99I	CGWCG	1 cut(s)	244
HpyAV	CCTTC	2 cut(s)	20, 292
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	1 cut(s)	367
HpyF3I	CTNAG	1 cut(s)	372
HpySE526I	ACGT	1 cut(s)	251
Hsp92II	CATG	2 cut(s)	70, 137
HspAI	GCGC	1 cut(s)	214
Kpn2I	TCCGGA	1 cut(s)	292
Kzo9I	GATC	1 cut(s)	19
LmnI	GCTCC	2 cut(s)	116, 336
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	1 cut(s)	251
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	3 cut(s)	109, 164, 167
MluCI	AATT	8 cut(s)	14, 35, 126, 192, 198, 275, 329, 541
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	2 cut(s)	129, 295
MnlI	CCTC	6 cut(s)	132, 157, 165, 189, 247, 327
MroI	TCCGGA	1 cut(s)	292
MseI	TTAA	4 cut(s)	83, 129, 197, 201
MspI	CCGG	1 cut(s)	293
MspR9I	CCNGG	1 cut(s)	311
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	311
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	2 cut(s)	70, 137
PacI	TTAATTAA	1 cut(s)	201
PagI	TCATGA	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	248
PctI	GAATGC	1 cut(s)	367
PfeI	GAWTC	2 cut(s)	220, 266
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
PshBI	ATTAAT	1 cut(s)	129
Psp1406I	AACGTT	1 cut(s)	251
Psp6I	CCWGG	1 cut(s)	309
PspFI	CCCAGC	1 cut(s)	339
PspGI	CCWGG	1 cut(s)	309
PspPI	GGNCC	1 cut(s)	281
RsaI	GTAC	1 cut(s)	522
RsaNI	GTAC	1 cut(s)	521
SaqAI	TTAA	4 cut(s)	83, 129, 197, 201
Sau3AI	GATC	1 cut(s)	19
Sau96I	GGNCC	1 cut(s)	281
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	1 cut(s)	311
SetI	ASST	6 cut(s)	149, 157, 254, 315, 341, 566
Sse9I	AATT	8 cut(s)	14, 35, 126, 192, 198, 275, 329, 541
SsiI	CCGC	1 cut(s)	446
SspMI	CTAG	1 cut(s)	429
StyD4I	CCNGG	1 cut(s)	309
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	2 cut(s)	18, 512
TasI	AATT	8 cut(s)	14, 35, 126, 192, 198, 275, 329, 541
TatI	WGTACW	1 cut(s)	520
TfiI	GAWTC	2 cut(s)	220, 266
Tru1I	TTAA	4 cut(s)	83, 129, 197, 201
Tru9I	TTAA	4 cut(s)	83, 129, 197, 201
TscAI	CASTG	1 cut(s)	50
TspDTI	ATGAA	3 cut(s)	150, 381, 513
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	1 cut(s)	50
VspI	ATTAAT	1 cut(s)	129
XapI	RAATTY	2 cut(s)	192, 275
XspI	CTAG	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.