Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008434

Physical Location & Seq

Genomic Coordinates Forward (+)

2637988 .. 2640936

Gene Structure 2949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G08200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGTTTATGGATCGAGAGAGACGGAGTTCTGGTCGTAATGGGACTCCTGAATATAGCAATGGCAAATTCCGAGATGATAATGGTTTTGGATTCTTAGATCGATTGGAAAATTGCCGTGAGAAGAGTCCTCCTAGATCGAAGATCCTTCGGATCCCGTCTCCGACCTCGTCTCCTCCACCTTCTAGCTCTTCTCCGCCATTTCATGGTTCCAATTCGCCTGACCGTGGATATATCGAACACCGCATCTCCAAGTTTGATACTCTCGCCGGCGTTGCCATCAAATACGGTGTTGAGGTTGCAGATGTGAAAAAGATGAATAACCTTGTTACTGATCTTCAAATGTTTGCTCTCAAGTCTCTTCAGATTCCGTTACCTGGGAGACATCCTCCTTCTCCATGTTTATCTAATGGCTCCTTAAACCATGGAGAGGGATGTTCATGCCACGAACCGGAATCACCAAACCATAGCGAACAGGAAGTGTTTGACTCATTTCAGTCTCTGAGATTGAAATCTTCGGAAAAGAAAGTTTCTCCAGCCATGTACTCACTGCAAGGTTATTACGGGCTAAAACCAGCAGACAGAACAGTCTCTGATGGAGGATGCTTCGAGATGGGAAATTACAAGACGGAAACTTCTCATCATATCTTCAACAACGGTGATAACGGATATCTCAGACCTTTCCCATCCACAAATACTCCCTTAAATCACCACAGGAAATCTAGAAGCTTGGTCAATGCGCTTATCGAAGAGGTTAACCAATCACCTGATAATAATACTCAAGAACCAACATCTGATAAGTTTATGAGAAGACGCCAAAAATCTGAGGCCGATTTTTCATCCCGGACTCCAGAACTTGTGTTGAAAGAAGAGAACGGTAGCAGCAATGGCGGATTTTTATCAATAGCTGGAAAAGGCTTAGCTTTGAGATCGAAAGCGTCAAGCAGAACCAATCTAGCAGCAGAATCTGAGAACGGTAATTTCAATCCGGTATCAATGAACTTGATGGATGCTCCAGTTTCAGACAGCTTTAGCAGTGTAAGAAAATCGTCGAGTGCATCGAGTCTACAAGATCCAGATGGTAACAGCAATAATGGTTCGTTGTCGCTATGGCCAACGTCAAAGTGGAGCTTGAAACCGGATTTGCTTACACCTGCGGCCATTACAAGTTCCATCTTTGATGGATTACCAAAGCCTTTAACTGGTCGAAGAAACAAAACGGCTCTGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM

Protein Analysis

409

Amino Acids

44.85

Weight (kDa)

8.83

Isoelectric Point (pI)

60.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08200 AT5G23130
fragaria_vesca	FvH4_4g36950 FvH4_4g36950
malus_domestica	MD13G1005700.v1.1 MD16G1002200.v1.1
prunus_persica	Prupe.1G347300_v2.0.a1 Prupe.1G347300_v2.0.a1 Prupe.1G347300_v2.0.a1
pyrus_communis	pycom13g00470 pycom16g00350
rosa_chinensis	RchiOBHm_Chr4g0446721
rosa_laevigata	RLG00000005637
rosa_multiflora	Rmu_sc0001753.1_g000037
rosa_roxburghii	Rroxscaffold_5G00387060
rosa_rugosa	Rorug04G0374000 Rorug04G0374100 Rorug04G0374200
rosa_samantha	Rh4AG435600 Rh4BG444400 Rh4CG461700 Rh4DG443400
rosa_wichuraiana	Rw4G037230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1159
AasI	GACNNNNNNGTC	1 cut(s)	584
Acc36I	ACCTGC	1 cut(s)	1159
AccB7I	CCANNNNNTGG	1 cut(s)	203
AccI	GTMKAC	1 cut(s)	1063
AciI	CCGC	4 cut(s)	194, 241, 888, 1154
AclWI	GGATC	5 cut(s)	18, 136, 145, 158, 1064
AcoI	YGGCCR	2 cut(s)	1109, 1155
AcsI	RAATTY	1 cut(s)	65
AcuI	CTGAAG	1 cut(s)	344
AcyI	GRCGYC	1 cut(s)	811
AfaI	GTAC	1 cut(s)	542
AfiI	CCNNNNNNNGG	6 cut(s)	203, 224, 374, 427, 448, 1199
AgsI	TTSAA	6 cut(s)	338, 508, 649, 862, 982, 1132
AjnI	CCWGG	1 cut(s)	373
AluBI	AGCT	6 cut(s)	186, 726, 905, 920, 1026, 1128
AluI	AGCT	6 cut(s)	186, 726, 905, 920, 1026, 1128
Alw26I	GTCTC	7 cut(s)	13, 162, 174, 360, 373, 501, 592
AlwI	GGATC	5 cut(s)	18, 136, 145, 158, 1064
AlwNI	CAGNNNCTG	3 cut(s)	499, 590, 965
AoxI	GGCC	3 cut(s)	825, 1109, 1155
ApeKI	GCWGC	2 cut(s)	879, 956
ApoI	RAATTY	1 cut(s)	65
AspLEI	GCGC	1 cut(s)	739
AsuC2I	CCSGG	1 cut(s)	841
AsuHPI	GGTGA	4 cut(s)	447, 668, 698, 753
BalI	TGGCCA	1 cut(s)	1111
BamHI	GGATCC	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	814
BbvI	GCAGC	2 cut(s)	891, 968
BccI	CCATC	8 cut(s)	284, 587, 604, 691, 997, 1070, 1172, 1178
BceAI	ACGGC	1 cut(s)	99
BciT130I	CCWGG	1 cut(s)	375
BcnI	CCSGG	1 cut(s)	841
BcoDI	GTCTC	7 cut(s)	13, 162, 174, 360, 373, 501, 592
BfaI	CTAG	4 cut(s)	132, 183, 720, 953
BfuAI	ACCTGC	1 cut(s)	1159
BisI	GCNGC	3 cut(s)	880, 957, 1155
BlpI	GCTNAGC	1 cut(s)	916
BlsI	GCNGC	3 cut(s)	881, 958, 1156
Bme1390I	CCNGG	2 cut(s)	375, 841
BmiI	GGNNCC	3 cut(s)	152, 208, 412
BmrFI	CCNGG	2 cut(s)	375, 841
BmsI	GCATC	4 cut(s)	252, 590, 997, 1064
BpiI	GAAGAC	1 cut(s)	814
BplI	GAGNNNNNCTC	2 cut(s)	370, 402
BpmI	CTGGAG	3 cut(s)	516, 831, 996
Bpu1102I	GCTNAGC	1 cut(s)	916
BpuEI	CTTGAG	2 cut(s)	335, 762
BpuMI	CCSGG	1 cut(s)	841
Bsa29I	ATCGAT	1 cut(s)	100
BsaBI	GATNNNNATC	2 cut(s)	508, 895
BsaHI	GRCGYC	1 cut(s)	811
BsaJI	CCNNGG	3 cut(s)	223, 374, 421
BsaWI	WCCGGW	3 cut(s)	448, 985, 1135
BsaXI	ACNNNNNCTCC	8 cut(s)	16, 46, 154, 184, 230, 260, 679, 709
Bsc4I	CCNNNNNNNGG	6 cut(s)	203, 224, 374, 427, 448, 1199
Bse118I	RCCGGY	1 cut(s)	266
Bse1I	ACTGG	2 cut(s)	1013, 1204
Bse3DI	GCAATG	2 cut(s)	64, 889
Bse8I	GATNNNNATC	2 cut(s)	508, 895
BseBI	CCWGG	1 cut(s)	375
BseCI	ATCGAT	1 cut(s)	100
BseDI	CCNNGG	3 cut(s)	223, 374, 421
BseGI	GGATG	6 cut(s)	382, 437, 605, 683, 836, 1012
BseJI	GATNNNNATC	2 cut(s)	508, 895
BseLI	CCNNNNNNNGG	6 cut(s)	203, 224, 374, 427, 448, 1199
BseMI	GCAATG	2 cut(s)	64, 889
BseMII	CTCAG	4 cut(s)	491, 685, 813, 957
BseNI	ACTGG	2 cut(s)	1013, 1204
BseRI	GAGGAG	1 cut(s)	162
BseXI	GCAGC	2 cut(s)	891, 968
BshFI	GGCC	3 cut(s)	827, 1111, 1157
BshVI	ATCGAT	1 cut(s)	100
BsiSI	CCGG	5 cut(s)	267, 449, 841, 986, 1136
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	6 cut(s)	203, 224, 374, 427, 448, 1199
BsmAI	GTCTC	7 cut(s)	13, 162, 174, 360, 373, 501, 592
BsmBI	CGTCTC	3 cut(s)	13, 162, 174
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	3 cut(s)	827, 1111, 1157
Bsp143I	GATC	8 cut(s)	10, 97, 134, 141, 150, 331, 926, 1069
Bsp1720I	GCTNAGC	1 cut(s)	916
Bsp19I	CCATGG	1 cut(s)	421
BspACI	CCGC	4 cut(s)	194, 241, 888, 1154
BspANI	GGCC	3 cut(s)	827, 1111, 1157
BspCNI	CTCAG	4 cut(s)	492, 684, 814, 958
BspDI	ATCGAT	1 cut(s)	100
BspLI	GGNNCC	3 cut(s)	152, 208, 412
BspMI	ACCTGC	1 cut(s)	1159
BspPI	GGATC	5 cut(s)	18, 136, 145, 158, 1064
BspQI	GCTCTTC	1 cut(s)	193
BsrDI	GCAATG	2 cut(s)	64, 889
BsrFI	RCCGGY	1 cut(s)	266
BsrI	ACTGG	2 cut(s)	1013, 1204
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	3 cut(s)	223, 374, 421
BssMI	GATC	8 cut(s)	10, 97, 134, 141, 150, 331, 926, 1069
BssNI	GRCGYC	1 cut(s)	811
BssT1I	CCWWGG	1 cut(s)	421
Bst2UI	CCWGG	1 cut(s)	375
Bst4CI	ACNGT	6 cut(s)	224, 287, 586, 656, 875, 974
Bst6I	CTCTTC	5 cut(s)	116, 193, 363, 741, 861
BstACI	GRCGYC	1 cut(s)	811
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	6 cut(s)	94, 500, 671, 822, 916, 966
BstDSI	CCRYGG	2 cut(s)	223, 421
BstF5I	GGATG	6 cut(s)	382, 437, 605, 683, 836, 1012
BstHHI	GCGC	1 cut(s)	739
BstKTI	GATC	8 cut(s)	13, 100, 137, 144, 153, 334, 929, 1072
BstMAI	GTCTC	7 cut(s)	13, 162, 174, 360, 373, 501, 592
BstMBI	GATC	8 cut(s)	10, 97, 134, 141, 150, 331, 926, 1069
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 885
BstNI	CCWGG	1 cut(s)	375
BstSCI	CCNGG	2 cut(s)	373, 839
BstV1I	GCAGC	2 cut(s)	891, 968
BstV2I	GAAGAC	1 cut(s)	814
BstX2I	RGATCY	3 cut(s)	141, 150, 1069
BstYI	RGATCY	3 cut(s)	141, 150, 1069
Bsu15I	ATCGAT	1 cut(s)	100
BsuRI	GGCC	3 cut(s)	827, 1111, 1157
BsuTUI	ATCGAT	1 cut(s)	100
BtgI	CCRYGG	2 cut(s)	223, 421
BtsCI	GGATG	6 cut(s)	382, 437, 605, 683, 836, 1012
BtsI	GCAGTG	2 cut(s)	545, 1039
BtsIMutI	CAGTG	2 cut(s)	545, 1039
BveI	ACCTGC	1 cut(s)	1159
Cac8I	GCNNGC	1 cut(s)	268
CaiI	CAGNNNCTG	3 cut(s)	499, 590, 965
CfoI	GCGC	1 cut(s)	739
Cfr10I	RCCGGY	1 cut(s)	266
ClaI	ATCGAT	1 cut(s)	100
CseI	GACGC	2 cut(s)	819, 924
Csp6I	GTAC	1 cut(s)	541
CviAII	CATG	5 cut(s)	203, 396, 422, 438, 538
CviQI	GTAC	1 cut(s)	541
DdeI	CTNAG	6 cut(s)	94, 500, 671, 822, 916, 966
DpnI	GATC	8 cut(s)	12, 99, 136, 143, 152, 333, 928, 1071
DpnII	GATC	8 cut(s)	10, 97, 134, 141, 150, 331, 926, 1069
DrdI	GACNNNNNNGTC	1 cut(s)	584
DseDI	GACNNNNNNGTC	1 cut(s)	584
EaeI	YGGCCR	2 cut(s)	1109, 1155
Eam1104I	CTCTTC	5 cut(s)	116, 193, 363, 741, 861
EarI	CTCTTC	5 cut(s)	116, 193, 363, 741, 861
EciI	GGCGGA	2 cut(s)	183, 903
Eco130I	CCWWGG	1 cut(s)	421
Eco32I	GATATC	1 cut(s)	668
Eco57I	CTGAAG	1 cut(s)	344
EcoRII	CCWGG	1 cut(s)	373
EcoRV	GATATC	1 cut(s)	668
EcoT14I	CCWWGG	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	421
Esp3I	CGTCTC	3 cut(s)	13, 162, 174
FaeI	CATG	5 cut(s)	206, 399, 425, 441, 541
FalI	AAGNNNNNCTT	2 cut(s)	1112, 1144
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	5 cut(s)	202, 395, 421, 437, 537
FblI	GTMKAC	1 cut(s)	1063
Fnu4HI	GCNGC	3 cut(s)	880, 957, 1155
FokI	GGATG	6 cut(s)	369, 444, 612, 670, 823, 1019
Fsp4HI	GCNGC	3 cut(s)	880, 957, 1155
FspBI	CTAG	4 cut(s)	132, 183, 720, 953
GlaI	GCGC	1 cut(s)	738
GluI	GCNGC	3 cut(s)	880, 957, 1155
GsuI	CTGGAG	3 cut(s)	516, 831, 996
HaeIII	GGCC	3 cut(s)	827, 1111, 1157
HapII	CCGG	5 cut(s)	267, 449, 841, 986, 1136
HgaI	GACGC	2 cut(s)	819, 924
HhaI	GCGC	1 cut(s)	739
Hin1I	GRCGYC	1 cut(s)	811
Hin1II	CATG	5 cut(s)	206, 399, 425, 441, 541
Hin6I	GCGC	1 cut(s)	737
HinP1I	GCGC	1 cut(s)	737
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HindIII	AAGCTT	1 cut(s)	724
HinfI	GANTC	9 cut(s)	43, 90, 124, 364, 452, 485, 844, 962, 1060
HpaI	GTTAAC	1 cut(s)	754
HpaII	CCGG	5 cut(s)	267, 449, 841, 986, 1136
HphI	GGTGA	4 cut(s)	447, 668, 698, 753
Hpy166II	GTNNAC	2 cut(s)	754, 1064
Hpy188III	TCNNGA	8 cut(s)	14, 47, 607, 720, 779, 848, 1073, 1223
Hpy8I	GTNNAC	2 cut(s)	754, 1064
Hpy99I	CGWCG	1 cut(s)	1051
HpyAV	CCTTC	3 cut(s)	155, 189, 399
HpyCH4III	ACNGT	6 cut(s)	224, 287, 586, 656, 875, 974
HpyCH4IV	ACGT	1 cut(s)	1115
HpyCH4V	TGCA	3 cut(s)	299, 550, 1055
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 885
HpyF3I	CTNAG	6 cut(s)	94, 500, 671, 822, 916, 966
HpySE526I	ACGT	1 cut(s)	1115
Hsp92I	GRCGYC	1 cut(s)	811
Hsp92II	CATG	5 cut(s)	206, 399, 425, 441, 541
HspAI	GCGC	1 cut(s)	737
KroI	GCCGGC	1 cut(s)	266
KroNI	GCCGGC	1 cut(s)	268
KspAI	GTTAAC	1 cut(s)	754
Kzo9I	GATC	8 cut(s)	10, 97, 134, 141, 150, 331, 926, 1069
LguI	GCTCTTC	1 cut(s)	193
LmnI	GCTCC	3 cut(s)	416, 1015, 1125
Lsp1109I	GCAGC	2 cut(s)	891, 968
LweI	GCATC	4 cut(s)	252, 590, 997, 1064
MaeI	CTAG	4 cut(s)	132, 183, 720, 953
MaeII	ACGT	1 cut(s)	1115
MaeIII	GTNAC	3 cut(s)	325, 369, 1079
MalI	GATC	8 cut(s)	12, 99, 136, 143, 152, 333, 928, 1071
MboI	GATC	8 cut(s)	10, 97, 134, 141, 150, 331, 926, 1069
MflI	RGATCY	3 cut(s)	141, 150, 1069
MlsI	TGGCCA	1 cut(s)	1111
MluCI	AATT	5 cut(s)	65, 109, 211, 616, 976
MluNI	TGGCCA	1 cut(s)	1111
MlyI	GAGTC	5 cut(s)	37, 133, 479, 838, 1069
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	9 cut(s)	138, 175, 183, 286, 396, 421, 590, 742, 817
Mox20I	TGGCCA	1 cut(s)	1111
MreI	CGCCGGCG	1 cut(s)	266
MroNI	GCCGGC	1 cut(s)	266
MscI	TGGCCA	1 cut(s)	1111
MseI	TTAA	4 cut(s)	416, 701, 753, 1196
Msp20I	TGGCCA	1 cut(s)	1111
MspI	CCGG	5 cut(s)	267, 449, 841, 986, 1136
MspR9I	CCNGG	2 cut(s)	375, 841
MvaI	CCWGG	1 cut(s)	375
MwoI	GCNNNNNNNGC	2 cut(s)	272, 885
NaeI	GCCGGC	1 cut(s)	268
NciI	CCSGG	1 cut(s)	841
NcoI	CCATGG	1 cut(s)	421
NdeII	GATC	8 cut(s)	10, 97, 134, 141, 150, 331, 926, 1069
NgoMIV	GCCGGC	1 cut(s)	266
NlaIII	CATG	5 cut(s)	206, 399, 425, 441, 541
NlaIV	GGNNCC	3 cut(s)	152, 208, 412
PaqCI	CACCTGC	1 cut(s)	1159
PciSI	GCTCTTC	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	1 cut(s)	1055
PdiI	GCCGGC	1 cut(s)	268
PfeI	GAWTC	4 cut(s)	90, 364, 452, 962
PflFI	GACNNNGTC	1 cut(s)	166
PflMI	CCANNNNNTGG	1 cut(s)	203
PfoI	TCCNGGA	1 cut(s)	839
PkrI	GCNGC	3 cut(s)	881, 958, 1156
PleI	GAGTC	5 cut(s)	37, 132, 479, 838, 1068
PpsI	GAGTC	5 cut(s)	37, 132, 479, 838, 1068
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	3 cut(s)	152, 208, 412
PstNI	CAGNNNCTG	3 cut(s)	499, 590, 965
PsuI	RGATCY	3 cut(s)	141, 150, 1069
PsyI	GACNNNGTC	1 cut(s)	166
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
SapI	GCTCTTC	1 cut(s)	193
SaqAI	TTAA	4 cut(s)	416, 701, 753, 1196
SatI	GCNGC	3 cut(s)	880, 957, 1155
Sau3AI	GATC	8 cut(s)	10, 97, 134, 141, 150, 331, 926, 1069
SchI	GAGTC	5 cut(s)	37, 133, 479, 838, 1069
ScrFI	CCNGG	2 cut(s)	375, 841
SfaNI	GCATC	4 cut(s)	252, 590, 997, 1064
SgrAI	CRCCGGYG	1 cut(s)	266
SmlI	CTYRAG	2 cut(s)	350, 777
SmoI	CTYRAG	2 cut(s)	350, 777
Sse9I	AATT	5 cut(s)	65, 109, 211, 616, 976
SsiI	CCGC	4 cut(s)	194, 241, 888, 1154
SspMI	CTAG	4 cut(s)	132, 183, 720, 953
StyD4I	CCNGG	2 cut(s)	373, 839
StyI	CCWWGG	1 cut(s)	421
TaaI	ACNGT	6 cut(s)	224, 287, 586, 656, 875, 974
TaiI	ACGT	1 cut(s)	1118
TasI	AATT	5 cut(s)	65, 109, 211, 616, 976
TatI	WGTACW	1 cut(s)	540
TauI	GCSGC	1 cut(s)	1157
TfiI	GAWTC	4 cut(s)	90, 364, 452, 962
Tru1I	TTAA	4 cut(s)	416, 701, 753, 1196
Tru9I	TTAA	4 cut(s)	416, 701, 753, 1196
TscAI	CASTG	2 cut(s)	552, 1039
TseI	GCWGC	2 cut(s)	879, 956
TspDTI	ATGAA	5 cut(s)	191, 329, 426, 825, 1010
TspGWI	ACGGA	4 cut(s)	37, 357, 641, 678
TspRI	CASTG	2 cut(s)	552, 1039
Tth111I	GACNNNGTC	1 cut(s)	166
Van91I	CCANNNNNTGG	1 cut(s)	203
XapI	RAATTY	1 cut(s)	65
XbaI	TCTAGA	1 cut(s)	719
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1119
XmiI	GTMKAC	1 cut(s)	1063
XspI	CTAG	4 cut(s)	132, 183, 720, 953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.