Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0008434

Physical Location & Seq

Genomic Coordinates Reverse (-)

64445443 .. 64448455

Gene Structure 3013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG443400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGCAGGTGGCAGATATCAGAAAGATGAATGGCCTGGTTACCGATCATCAAATGTTTGCCCTCAGATTTCTGCACATTCCACTACCTGGGAGGCATCCTCCATCCCCTTGTTTATCAAATGGTTCACCAGGGAGCCAGAGTAGTTCAGAGAGGTCCCCCAGAGTTGCTCCTCGGAAAGCCTCCCAGGCAATGAACTCTTTACAAAGTTATTATGGGCTGAAAGCAAGAAATCAGAACTCTATCAAAAGGGAGATTCTTGAAATGGCTCTCTACAAAAAGGAAGGCTCCCATTATTTAGAAGATGGGTCCTTACGTGGAGCCTCATCTTTCAGCCTTTGTAGAAAGTCAAGAAGCTTAGTTAAGTTGGATGAGAATCGTGAACTTTCTGATTCTGTGCCTAGTACAGAAACTAGGGAAGGTGACTCTGATCAGTTGGGAAAAAGGATTAGACGGCGCCAGAAATCTGAAGCTGACTTTTGTCGCACCCCTGAGATGCTGTTGGAAAATAACACTACCAGTGGCGGGTTTTCAGCCACAGCAATTACAGGGAAGTGCTTGGCCCTCAGACCAAAAGCAGCAGCCAATCGAACTGCTGATGTTGAAACTGGTGGGTTGAACCCTACTCCAGTAGGTCTTGGTGATTCTTTTATGGCATCAGATGGGTCTGGAGTGAGGAAGTCGTCAAGCACATCAAATTTGCAGGATCATGAATCTAGCTGTTCTGCATCAATCTGGTCAGCATCTAAATGGAGTTTGAAGCCAGATTTACAAGCGTTTTCAACTGCAGCCATTACAAAACCCATATTTGATGGCTTGCCTAAGCCTATGGTTGGTCGACGAAACAAAGCCGCGCTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM

Protein Analysis

286

Amino Acids

31.06

Weight (kDa)

9.65

Isoelectric Point (pI)

56.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08200 AT5G23130
fragaria_vesca	FvH4_4g36950 FvH4_4g36950
malus_domestica	MD13G1005700.v1.1 MD16G1002200.v1.1
prunus_persica	Prupe.1G347300_v2.0.a1 Prupe.1G347300_v2.0.a1 Prupe.1G347300_v2.0.a1
pyrus_communis	pycom13g00470 pycom16g00350
rosa_chinensis	RchiOBHm_Chr4g0446721
rosa_laevigata	RLG00000005637
rosa_multiflora	Rmu_sc0001753.1_g000037
rosa_roxburghii	Rroxscaffold_5G00387060
rosa_rugosa	Rorug04G0374000 Rorug04G0374100 Rorug04G0374200
rosa_samantha	Rh4AG435600 Rh4BG444400 Rh4CG461700 Rh4DG443400
rosa_wichuraiana	Rw4G037230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	453
AccB7I	CCANNNNNTGG	1 cut(s)	86
AccI	GTMKAC	1 cut(s)	835
AccII	CGCG	1 cut(s)	851
AciI	CCGC	2 cut(s)	522, 849
AclWI	GGATC	1 cut(s)	711
AcsI	RAATTY	1 cut(s)	694
AcuI	CTGAAG	1 cut(s)	486
AcyI	GRCGYC	1 cut(s)	454
AfaI	GTAC	1 cut(s)	403
AfiI	CCNNNNNNNGG	3 cut(s)	86, 522, 830
AgsI	TTSAA	5 cut(s)	260, 602, 616, 757, 780
AjnI	CCWGG	4 cut(s)	33, 85, 127, 183
AluBI	AGCT	3 cut(s)	354, 470, 717
AluI	AGCT	3 cut(s)	354, 470, 717
AlwI	GGATC	1 cut(s)	711
AoxI	GGCC	2 cut(s)	31, 558
ApeKI	GCWGC	3 cut(s)	575, 578, 785
ApoI	RAATTY	1 cut(s)	694
AspLEI	GCGC	2 cut(s)	456, 853
AspS9I	GGNCC	3 cut(s)	153, 306, 559
AsuHPI	GGTGA	3 cut(s)	117, 431, 650
AvaII	GGWCC	2 cut(s)	153, 306
BanI	GGYRCC	1 cut(s)	453
BbvI	GCAGC	3 cut(s)	587, 590, 797
BccI	CCATC	4 cut(s)	109, 296, 653, 803
BceAI	ACGGC	1 cut(s)	467
BciT130I	CCWGG	4 cut(s)	35, 87, 129, 185
BclI	TGATCA	1 cut(s)	427
BfaI	CTAG	3 cut(s)	399, 411, 714
BfmI	CTRYAG	1 cut(s)	783
BfoI	RGCGCY	1 cut(s)	457
BglI	GCCNNNNNGGC	1 cut(s)	185
BisI	GCNGC	4 cut(s)	576, 579, 786, 849
BlsI	GCNGC	4 cut(s)	577, 580, 787, 850
Bme1390I	CCNGG	4 cut(s)	35, 87, 129, 185
Bme18I	GGWCC	2 cut(s)	153, 306
BmgT120I	GGNCC	3 cut(s)	153, 306, 559
BmiI	GGNNCC	6 cut(s)	134, 155, 286, 307, 319, 455
BmrFI	CCNGG	4 cut(s)	35, 87, 129, 185
BmsI	GCATC	5 cut(s)	103, 483, 662, 734, 749
BoxI	GACNNNNGTC	1 cut(s)	477
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
BpmI	CTGGAG	2 cut(s)	609, 687
Bpu10I	CCTNAGC	1 cut(s)	819
BsaAI	YACGTR	1 cut(s)	314
BsaBI	GATNNNNATC	1 cut(s)	372
BsaHI	GRCGYC	1 cut(s)	454
BsaJI	CCNNGG	4 cut(s)	86, 128, 170, 183
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 522, 830
Bse1I	ACTGG	3 cut(s)	516, 610, 626
Bse3DI	GCAATG	1 cut(s)	195
Bse8I	GATNNNNATC	1 cut(s)	372
BseBI	CCWGG	4 cut(s)	35, 87, 129, 185
BseDI	CCNNGG	4 cut(s)	86, 128, 170, 183
BseGI	GGATG	3 cut(s)	94, 101, 373
BseJI	GATNNNNATC	1 cut(s)	372
BseLI	CCNNNNNNNGG	3 cut(s)	86, 522, 830
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	3 cut(s)	76, 480, 577
BseNI	ACTGG	3 cut(s)	516, 610, 626
BseRI	GAGGAG	1 cut(s)	159
BseXI	GCAGC	3 cut(s)	587, 590, 797
BsgI	GTGCAG	1 cut(s)	56
Bsh1236I	CGCG	1 cut(s)	851
BshFI	GGCC	2 cut(s)	33, 560
BshNI	GGYRCC	1 cut(s)	453
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	3 cut(s)	86, 522, 830
BsmFI	GGGAC	1 cut(s)	139
BsnI	GGCC	2 cut(s)	33, 560
Bsp143I	GATC	3 cut(s)	43, 427, 703
BspACI	CCGC	2 cut(s)	522, 849
BspANI	GGCC	2 cut(s)	33, 560
BspCNI	CTCAG	3 cut(s)	75, 481, 576
BspFNI	CGCG	1 cut(s)	851
BspHI	TCATGA	1 cut(s)	706
BspLI	GGNNCC	6 cut(s)	134, 155, 286, 307, 319, 455
BspMAI	CTGCAG	1 cut(s)	787
BspPI	GGATC	1 cut(s)	711
BspT107I	GGYRCC	1 cut(s)	453
BsrDI	GCAATG	1 cut(s)	195
BsrI	ACTGG	3 cut(s)	516, 610, 626
BssECI	CCNNGG	4 cut(s)	86, 128, 170, 183
BssMI	GATC	3 cut(s)	43, 427, 703
BssNI	GRCGYC	1 cut(s)	454
Bst2UI	CCWGG	4 cut(s)	35, 87, 129, 185
BstACI	GRCGYC	1 cut(s)	454
BstBAI	YACGTR	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	815
BstDEI	CTNAG	5 cut(s)	62, 355, 489, 563, 819
BstEII	GGTNACC	1 cut(s)	37
BstF5I	GGATG	3 cut(s)	94, 101, 373
BstFNI	CGCG	1 cut(s)	851
BstH2I	RGCGCY	1 cut(s)	457
BstHHI	GCGC	2 cut(s)	456, 853
BstKTI	GATC	3 cut(s)	46, 430, 706
BstMBI	GATC	3 cut(s)	43, 427, 703
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstNI	CCWGG	4 cut(s)	35, 87, 129, 185
BstPAI	GACNNNNGTC	1 cut(s)	477
BstPI	GGTNACC	1 cut(s)	37
BstSCI	CCNGG	4 cut(s)	33, 85, 127, 183
BstSFI	CTRYAG	1 cut(s)	783
BstUI	CGCG	1 cut(s)	851
BstV1I	GCAGC	3 cut(s)	587, 590, 797
BsuRI	GGCC	2 cut(s)	33, 560
BtsCI	GGATG	3 cut(s)	94, 101, 373
BtsIMutI	CAGTG	1 cut(s)	523
Cac8I	GCNNGC	1 cut(s)	815
CciI	TCATGA	1 cut(s)	706
CfoI	GCGC	2 cut(s)	456, 853
Cfr13I	GGNCC	3 cut(s)	153, 306, 559
Csp6I	GTAC	1 cut(s)	402
CviAII	CATG	1 cut(s)	707
CviQI	GTAC	1 cut(s)	402
DdeI	CTNAG	5 cut(s)	62, 355, 489, 563, 819
DinI	GGCGCC	1 cut(s)	455
DpnI	GATC	3 cut(s)	45, 429, 705
DpnII	GATC	3 cut(s)	43, 427, 703
Eco32I	GATATC	1 cut(s)	16
Eco47I	GGWCC	2 cut(s)	153, 306
Eco57I	CTGAAG	1 cut(s)	486
Eco91I	GGTNACC	1 cut(s)	37
EcoO109I	RGGNCCY	2 cut(s)	153, 306
EcoO65I	GGTNACC	1 cut(s)	37
EcoRII	CCWGG	4 cut(s)	33, 85, 127, 183
EcoRV	GATATC	1 cut(s)	16
EgeI	GGCGCC	1 cut(s)	455
EheI	GGCGCC	1 cut(s)	455
FaeI	CATG	1 cut(s)	710
FaiI	YATR	5 cut(s)	213, 650, 708, 803, 827
FalI	AAGNNNNNCTT	1 cut(s)	837
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	1 cut(s)	706
FauI	CCCGC	1 cut(s)	515
FbaI	TGATCA	1 cut(s)	427
FblI	GTMKAC	1 cut(s)	835
Fnu4HI	GCNGC	4 cut(s)	576, 579, 786, 849
FokI	GGATG	3 cut(s)	81, 88, 380
Fsp4HI	GCNGC	4 cut(s)	576, 579, 786, 849
FspBI	CTAG	3 cut(s)	399, 411, 714
GlaI	GCGC	2 cut(s)	455, 852
GluI	GCNGC	4 cut(s)	576, 579, 786, 849
GsuI	CTGGAG	2 cut(s)	609, 687
HaeII	RGCGCY	1 cut(s)	457
HaeIII	GGCC	2 cut(s)	33, 560
HhaI	GCGC	2 cut(s)	456, 853
Hin1I	GRCGYC	1 cut(s)	454
Hin1II	CATG	1 cut(s)	710
Hin6I	GCGC	2 cut(s)	454, 851
HinP1I	GCGC	2 cut(s)	454, 851
HincII	GTYRAC	1 cut(s)	836
HindII	GTYRAC	1 cut(s)	836
HindIII	AAGCTT	1 cut(s)	352
HinfI	GANTC	6 cut(s)	253, 373, 389, 422, 641, 710
HphI	GGTGA	3 cut(s)	117, 431, 650
Hpy166II	GTNNAC	3 cut(s)	125, 380, 836
Hpy188III	TCNNGA	5 cut(s)	257, 348, 377, 666, 707
Hpy8I	GTNNAC	3 cut(s)	125, 380, 836
Hpy99I	CGWCG	1 cut(s)	840
HpyAV	CCTTC	2 cut(s)	275, 410
HpyCH4IV	ACGT	1 cut(s)	313
HpyCH4V	TGCA	5 cut(s)	4, 73, 700, 725, 785
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpyF3I	CTNAG	5 cut(s)	62, 355, 489, 563, 819
HpySE526I	ACGT	1 cut(s)	313
Hsp92I	GRCGYC	1 cut(s)	454
Hsp92II	CATG	1 cut(s)	710
HspAI	GCGC	2 cut(s)	454, 851
KasI	GGCGCC	1 cut(s)	453
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	3 cut(s)	43, 427, 703
LmnI	GCTCC	4 cut(s)	132, 172, 290, 317
Lsp1109I	GCAGC	3 cut(s)	587, 590, 797
LweI	GCATC	5 cut(s)	103, 483, 662, 734, 749
MaeI	CTAG	3 cut(s)	399, 411, 714
MaeII	ACGT	1 cut(s)	313
MaeIII	GTNAC	2 cut(s)	37, 419
MalI	GATC	3 cut(s)	45, 429, 705
MboI	GATC	3 cut(s)	43, 427, 703
MboII	GAAGA	1 cut(s)	311
MluCI	AATT	2 cut(s)	540, 694
Mly113I	GGCGCC	1 cut(s)	454
MlyI	GAGTC	1 cut(s)	416
MmeI	TCCRAC	2 cut(s)	345, 480
MnlI	CCTC	9 cut(s)	71, 84, 108, 144, 180, 190, 331, 572, 666
MseI	TTAA	2 cut(s)	360, 859
MslI	CAYNNNNRTG	1 cut(s)	745
MspR9I	CCNGG	4 cut(s)	35, 87, 129, 185
MvaI	CCWGG	4 cut(s)	35, 87, 129, 185
MvnI	CGCG	1 cut(s)	851
MwoI	GCNNNNNNNGC	1 cut(s)	185
NarI	GGCGCC	1 cut(s)	454
NdeII	GATC	3 cut(s)	43, 427, 703
NlaIII	CATG	1 cut(s)	710
NlaIV	GGNNCC	6 cut(s)	134, 155, 286, 307, 319, 455
NmuCI	GTSAC	1 cut(s)	419
PagI	TCATGA	1 cut(s)	706
PfeI	GAWTC	5 cut(s)	253, 373, 389, 641, 710
PflMI	CCANNNNNTGG	1 cut(s)	86
PkrI	GCNGC	4 cut(s)	577, 580, 787, 850
PleI	GAGTC	1 cut(s)	416
PluTI	GGCGCC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	416
Ppu21I	YACGTR	1 cut(s)	314
PpuMI	RGGWCCY	2 cut(s)	153, 306
PshAI	GACNNNNGTC	1 cut(s)	477
Psp5II	RGGWCCY	2 cut(s)	153, 306
Psp6I	CCWGG	4 cut(s)	33, 85, 127, 183
PspEI	GGTNACC	1 cut(s)	37
PspGI	CCWGG	4 cut(s)	33, 85, 127, 183
PspN4I	GGNNCC	6 cut(s)	134, 155, 286, 307, 319, 455
PspPI	GGNCC	3 cut(s)	153, 306, 559
PspPPI	RGGWCCY	2 cut(s)	153, 306
PstI	CTGCAG	1 cut(s)	787
RsaI	GTAC	1 cut(s)	403
RsaNI	GTAC	1 cut(s)	402
RseI	CAYNNNNRTG	1 cut(s)	745
SalI	GTCGAC	1 cut(s)	834
SaqAI	TTAA	2 cut(s)	360, 859
SatI	GCNGC	4 cut(s)	576, 579, 786, 849
Sau3AI	GATC	3 cut(s)	43, 427, 703
Sau96I	GGNCC	3 cut(s)	153, 306, 559
SchI	GAGTC	1 cut(s)	416
ScrFI	CCNGG	4 cut(s)	35, 87, 129, 185
SetI	ASST	9 cut(s)	9, 88, 155, 316, 356, 421, 472, 634, 719
SfaNI	GCATC	5 cut(s)	103, 483, 662, 734, 749
SfcI	CTRYAG	1 cut(s)	783
SfoI	GGCGCC	1 cut(s)	455
SinI	GGWCC	2 cut(s)	153, 306
SmiMI	CAYNNNNRTG	1 cut(s)	745
Sse9I	AATT	2 cut(s)	540, 694
SsiI	CCGC	2 cut(s)	522, 849
SspDI	GGCGCC	1 cut(s)	453
SspMI	CTAG	3 cut(s)	399, 411, 714
StyD4I	CCNGG	4 cut(s)	33, 85, 127, 183
TaiI	ACGT	1 cut(s)	316
TaqI	TCGA	2 cut(s)	586, 835
TasI	AATT	2 cut(s)	540, 694
TatI	WGTACW	1 cut(s)	401
TauI	GCSGC	1 cut(s)	851
TfiI	GAWTC	5 cut(s)	253, 373, 389, 641, 710
Tru1I	TTAA	2 cut(s)	360, 859
Tru9I	TTAA	2 cut(s)	360, 859
TscAI	CASTG	1 cut(s)	523
TseFI	GTSAC	1 cut(s)	419
TseI	GCWGC	3 cut(s)	575, 578, 785
Tsp45I	GTSAC	1 cut(s)	419
TspDTI	ATGAA	3 cut(s)	41, 206, 723
TspRI	CASTG	1 cut(s)	523
Van91I	CCANNNNNTGG	1 cut(s)	86
VpaK11BI	GGWCC	2 cut(s)	153, 306
XapI	RAATTY	1 cut(s)	694
XmiI	GTMKAC	1 cut(s)	835
XspI	CTAG	3 cut(s)	399, 411, 714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.