Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008434

Physical Location & Seq

Genomic Coordinates Reverse (-)

33662899 .. 33665635

Gene Structure 2737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g36950.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGTCTTCTCATTCGTCTTCTTCTTCTTCTTACGCAATGGGTCTCCCCAATTCGCATTCACAATCTTCCAATTCCAACTCGCCTCCTTCTTCTCCTCCTCGTCTCAGTTTGAGTGCCGCCGGCGCCGGATACATAGAACACACCGTCTCCAAATTCGACACCCTCGCCGGTGTCGCCATCAAATACGGAGTTGAGGTGGCAGATATCAGAAAAATGAATGGCCTCGTTACAGATCATCAAATGTTTGCCCTCCCATTTCTTCAGATTCCACTACCCGGGAGGCATCCTCCATCTCCTTGTTTATCGAATGGTTCCAACACGCCACGGAGCCAGAGTAGTTCAGATAGGTCCCCCAGATTTACTTCTCGGAAAACCTCCCTGGCAATGAACTCTTTACAAAGCTATTATGGGTTGAAAGCAAAAAATCAGAACTCTATCAAAAGGGAGATTATTGAAATGGCACTATGCAGAAAGGAAGGCTCCCATAATTTAGAAGATGAGTCATTACTTGGAGCCTCGCACCAACCATTCAGCCATTATAGAAAGTCAAAAAGCTTAGTTAAATTGGATGAGAATGGTGAACTTTCTGATTCCATTCCTAGTTCAGAAACTAGAGAAGGCAACTCAGATCAGTTGGGAAAAAGGATTAGACGGCGCCAGAAATCTGAAGCTGACTTTCGTCGCACCCCTGAGATGCTGTTAGAAGATAACACTGCCAGTGGTGGGTTTTCAGCCACATCAATTACAGGGAAGTGCTTGGCCCTCAGACCGAAAGCAGGAGCCAATCGAACTGCCGATGTTGAAACTGGTGGGTTGAATCCTGGTCCAGTAGGTCTTGTTGATTCTTTGATAGCATCAGATGCGTCTGGAGTGAGGAAGTCATCAAGCACATCAAATTTGCAGGATCATGATACTAGCTGTTCTGCATCAATCTGGTCAACTTCTAAATGGAGTTTGAAGCCAGATTTACAAGTGTTTTCAACTGCAGCCATTACAAAACCCATATTTGATGGCTTGCCTAAGCCTATGGTTAGTCGACGAAACAAAGCCGCGCTCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM

Protein Analysis

354

Amino Acids

37.94

Weight (kDa)

9.45

Isoelectric Point (pI)

57.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08200 AT5G23130
fragaria_vesca	FvH4_4g36950 FvH4_4g36950
malus_domestica	MD13G1005700.v1.1 MD16G1002200.v1.1
prunus_persica	Prupe.1G347300_v2.0.a1 Prupe.1G347300_v2.0.a1 Prupe.1G347300_v2.0.a1
pyrus_communis	pycom13g00470 pycom16g00350
rosa_chinensis	RchiOBHm_Chr4g0446721
rosa_laevigata	RLG00000005637
rosa_multiflora	Rmu_sc0001753.1_g000037
rosa_roxburghii	Rroxscaffold_5G00387060
rosa_rugosa	Rorug04G0374000 Rorug04G0374100 Rorug04G0374200
rosa_samantha	Rh4AG435600 Rh4BG444400 Rh4CG461700 Rh4DG443400
rosa_wichuraiana	Rw4G037230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	122, 654
AccI	GTMKAC	1 cut(s)	1036
AccII	CGCG	1 cut(s)	1052
AciI	CCGC	2 cut(s)	117, 1050
AclWI	GGATC	1 cut(s)	912
AcsI	RAATTY	2 cut(s)	152, 895
AcuI	CTGAAG	2 cut(s)	245, 687
AcyI	GRCGYC	2 cut(s)	123, 655
AfiI	CCNNNNNNNGG	3 cut(s)	275, 723, 776
AgsI	TTSAA	6 cut(s)	415, 455, 803, 817, 958, 981
AjnI	CCWGG	2 cut(s)	378, 820
AluBI	AGCT	4 cut(s)	402, 555, 671, 918
AluI	AGCT	4 cut(s)	402, 555, 671, 918
Alw26I	GTCTC	3 cut(s)	47, 107, 151
AlwI	GGATC	1 cut(s)	912
Ama87I	CYCGRG	1 cut(s)	275
AoxI	GGCC	2 cut(s)	220, 759
ApeKI	GCWGC	1 cut(s)	986
ApoI	RAATTY	2 cut(s)	152, 895
AspLEI	GCGC	3 cut(s)	125, 657, 1054
AspS9I	GGNCC	3 cut(s)	348, 760, 824
AsuC2I	CCSGG	2 cut(s)	276, 277
AsuHPI	GGTGA	1 cut(s)	590
AvaI	CYCGRG	1 cut(s)	275
AvaII	GGWCC	2 cut(s)	348, 824
BanI	GGYRCC	2 cut(s)	122, 654
BbsI	GAAGAC	1 cut(s)	9
BbvI	GCAGC	1 cut(s)	998
BccI	CCATC	3 cut(s)	185, 298, 1004
BceAI	ACGGC	1 cut(s)	668
BciT130I	CCWGG	2 cut(s)	380, 822
BciVI	GTATCC	1 cut(s)	122
BcnI	CCSGG	2 cut(s)	276, 277
BcoDI	GTCTC	3 cut(s)	47, 107, 151
BfaI	CTAG	3 cut(s)	600, 612, 915
BfmI	CTRYAG	1 cut(s)	984
BfoI	RGCGCY	2 cut(s)	126, 658
BfuI	GTATCC	1 cut(s)	122
BisI	GCNGC	3 cut(s)	117, 987, 1050
BlsI	GCNGC	3 cut(s)	118, 988, 1051
Bme1390I	CCNGG	4 cut(s)	276, 277, 380, 822
Bme18I	GGWCC	2 cut(s)	348, 824
BmeT110I	CYCGRG	1 cut(s)	275
BmgT120I	GGNCC	3 cut(s)	348, 760, 824
BmiI	GGNNCC	8 cut(s)	124, 313, 329, 350, 481, 514, 656, 781
BmrFI	CCNGG	4 cut(s)	276, 277, 380, 822
BmsI	GCATC	5 cut(s)	292, 684, 850, 863, 935
BoxI	GACNNNNGTC	1 cut(s)	678
BpiI	GAAGAC	1 cut(s)	9
BplI	GAGNNNNNCTC	2 cut(s)	271, 303
BpmI	CTGGAG	1 cut(s)	888
Bpu10I	CCTNAGC	1 cut(s)	1020
BpuMI	CCSGG	2 cut(s)	276, 277
BsaHI	GRCGYC	2 cut(s)	123, 655
BsaI	GGTCTC	1 cut(s)	47
BsaJI	CCNNGG	3 cut(s)	275, 323, 378
BsaXI	ACNNNNNCTCC	6 cut(s)	131, 161, 180, 210, 319, 349
Bsc4I	CCNNNNNNNGG	3 cut(s)	275, 723, 776
Bse118I	RCCGGY	2 cut(s)	119, 167
Bse1I	ACTGG	3 cut(s)	717, 811, 827
Bse3DI	GCAATG	2 cut(s)	42, 390
BseBI	CCWGG	2 cut(s)	380, 822
BseDI	CCNNGG	3 cut(s)	275, 323, 378
BseGI	GGATG	2 cut(s)	283, 574
BseLI	CCNNNNNNNGG	3 cut(s)	275, 723, 776
BseMI	GCAATG	2 cut(s)	42, 390
BseMII	CTCAG	4 cut(s)	118, 639, 681, 778
BseNI	ACTGG	3 cut(s)	717, 811, 827
BseRI	GAGGAG	2 cut(s)	84, 87
BseXI	GCAGC	1 cut(s)	998
Bsh1236I	CGCG	1 cut(s)	1052
BshFI	GGCC	2 cut(s)	222, 761
BshNI	GGYRCC	2 cut(s)	122, 654
BsiHKCI	CYCGRG	1 cut(s)	275
BsiSI	CCGG	4 cut(s)	120, 126, 168, 276
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	3 cut(s)	275, 723, 776
BsmAI	GTCTC	3 cut(s)	47, 107, 151
BsmBI	CGTCTC	2 cut(s)	107, 151
BsmFI	GGGAC	1 cut(s)	334
BsmI	GAATGC	1 cut(s)	55
BsnI	GGCC	2 cut(s)	222, 761
Bso31I	GGTCTC	1 cut(s)	47
BsoBI	CYCGRG	1 cut(s)	275
Bsp143I	GATC	3 cut(s)	232, 628, 904
BspACI	CCGC	2 cut(s)	117, 1050
BspANI	GGCC	2 cut(s)	222, 761
BspCNI	CTCAG	4 cut(s)	117, 638, 682, 777
BspFNI	CGCG	1 cut(s)	1052
BspHI	TCATGA	1 cut(s)	907
BspLI	GGNNCC	8 cut(s)	124, 313, 329, 350, 481, 514, 656, 781
BspMAI	CTGCAG	1 cut(s)	988
BspPI	GGATC	1 cut(s)	912
BspT107I	GGYRCC	2 cut(s)	122, 654
BspTNI	GGTCTC	1 cut(s)	47
BsrDI	GCAATG	2 cut(s)	42, 390
BsrFI	RCCGGY	2 cut(s)	119, 167
BsrI	ACTGG	3 cut(s)	717, 811, 827
BssAI	RCCGGY	2 cut(s)	119, 167
BssECI	CCNNGG	3 cut(s)	275, 323, 378
BssMI	GATC	3 cut(s)	232, 628, 904
BssNI	GRCGYC	2 cut(s)	123, 655
Bst2UI	CCWGG	2 cut(s)	380, 822
Bst4CI	ACNGT	1 cut(s)	145
BstACI	GRCGYC	2 cut(s)	123, 655
BstAPI	GCANNNNNTGC	1 cut(s)	860
BstC8I	GCNNGC	2 cut(s)	121, 1016
BstDEI	CTNAG	6 cut(s)	104, 556, 625, 690, 764, 1020
BstDSI	CCRYGG	1 cut(s)	323
BstF5I	GGATG	2 cut(s)	283, 574
BstFNI	CGCG	1 cut(s)	1052
BstH2I	RGCGCY	2 cut(s)	126, 658
BstHHI	GCGC	3 cut(s)	125, 657, 1054
BstKTI	GATC	3 cut(s)	235, 631, 907
BstMAI	GTCTC	3 cut(s)	47, 107, 151
BstMBI	GATC	3 cut(s)	232, 628, 904
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 173, 860
BstNI	CCWGG	2 cut(s)	380, 822
BstPAI	GACNNNNGTC	1 cut(s)	678
BstSCI	CCNGG	4 cut(s)	274, 275, 378, 820
BstSFI	CTRYAG	1 cut(s)	984
BstUI	CGCG	1 cut(s)	1052
BstV1I	GCAGC	1 cut(s)	998
BstV2I	GAAGAC	1 cut(s)	9
BsuI	GTATCC	1 cut(s)	122
BsuRI	GGCC	2 cut(s)	222, 761
BtgI	CCRYGG	1 cut(s)	323
BtsCI	GGATG	2 cut(s)	283, 574
BtsI	GCAGTG	1 cut(s)	711
BtsIMutI	CAGTG	2 cut(s)	711, 724
Cac8I	GCNNGC	2 cut(s)	121, 1016
CciI	TCATGA	1 cut(s)	907
CfoI	GCGC	3 cut(s)	125, 657, 1054
Cfr10I	RCCGGY	2 cut(s)	119, 167
Cfr13I	GGNCC	3 cut(s)	348, 760, 824
Cfr9I	CCCGGG	1 cut(s)	275
CseI	GACGC	1 cut(s)	852
CviAII	CATG	1 cut(s)	908
DdeI	CTNAG	6 cut(s)	104, 556, 625, 690, 764, 1020
DinI	GGCGCC	2 cut(s)	124, 656
DpnI	GATC	3 cut(s)	234, 630, 906
DpnII	GATC	3 cut(s)	232, 628, 904
Eco31I	GGTCTC	1 cut(s)	47
Eco32I	GATATC	1 cut(s)	205
Eco47I	GGWCC	2 cut(s)	348, 824
Eco57I	CTGAAG	2 cut(s)	245, 687
Eco88I	CYCGRG	1 cut(s)	275
EcoO109I	RGGNCCY	1 cut(s)	348
EcoRII	CCWGG	2 cut(s)	378, 820
EcoRV	GATATC	1 cut(s)	205
EgeI	GGCGCC	2 cut(s)	124, 656
EheI	GGCGCC	2 cut(s)	124, 656
Esp3I	CGTCTC	2 cut(s)	107, 151
FaeI	CATG	1 cut(s)	911
FaiI	YATR	8 cut(s)	134, 408, 466, 486, 540, 909, 1004, 1028
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	1 cut(s)	907
FblI	GTMKAC	1 cut(s)	1036
Fnu4HI	GCNGC	3 cut(s)	117, 987, 1050
FokI	GGATG	2 cut(s)	270, 581
Fsp4HI	GCNGC	3 cut(s)	117, 987, 1050
FspBI	CTAG	3 cut(s)	600, 612, 915
GlaI	GCGC	3 cut(s)	124, 656, 1053
GluI	GCNGC	3 cut(s)	117, 987, 1050
GsuI	CTGGAG	1 cut(s)	888
HaeII	RGCGCY	2 cut(s)	126, 658
HaeIII	GGCC	2 cut(s)	222, 761
HapII	CCGG	4 cut(s)	120, 126, 168, 276
HgaI	GACGC	1 cut(s)	852
HhaI	GCGC	3 cut(s)	125, 657, 1054
Hin1I	GRCGYC	2 cut(s)	123, 655
Hin1II	CATG	1 cut(s)	911
Hin6I	GCGC	3 cut(s)	123, 655, 1052
HinP1I	GCGC	3 cut(s)	123, 655, 1052
HincII	GTYRAC	2 cut(s)	939, 1037
HindII	GTYRAC	2 cut(s)	939, 1037
HindIII	AAGCTT	1 cut(s)	553
HinfI	GANTC	5 cut(s)	265, 500, 590, 817, 842
HpaII	CCGG	4 cut(s)	120, 126, 168, 276
HphI	GGTGA	1 cut(s)	590
Hpy166II	GTNNAC	3 cut(s)	581, 939, 1037
Hpy188III	TCNNGA	2 cut(s)	867, 908
Hpy8I	GTNNAC	3 cut(s)	581, 939, 1037
Hpy99I	CGWCG	2 cut(s)	684, 1041
HpyAV	CCTTC	3 cut(s)	96, 470, 611
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4V	TGCA	4 cut(s)	468, 901, 926, 986
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 173, 860
HpyF3I	CTNAG	6 cut(s)	104, 556, 625, 690, 764, 1020
Hsp92I	GRCGYC	2 cut(s)	123, 655
Hsp92II	CATG	1 cut(s)	911
HspAI	GCGC	3 cut(s)	123, 655, 1052
KasI	GGCGCC	2 cut(s)	122, 654
KroI	GCCGGC	1 cut(s)	119
KroNI	GCCGGC	1 cut(s)	121
Kzo9I	GATC	3 cut(s)	232, 628, 904
LmnI	GCTCC	4 cut(s)	327, 485, 512, 779
Lsp1109I	GCAGC	1 cut(s)	998
LweI	GCATC	5 cut(s)	292, 684, 850, 863, 935
MaeI	CTAG	3 cut(s)	600, 612, 915
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	3 cut(s)	234, 630, 906
MboI	GATC	3 cut(s)	232, 628, 904
MboII	GAAGA	9 cut(s)	9, 12, 15, 18, 57, 81, 251, 506, 716
MluCI	AATT	7 cut(s)	49, 70, 152, 487, 563, 741, 895
Mly113I	GGCGCC	2 cut(s)	123, 655
MlyI	GAGTC	1 cut(s)	509
MmeI	TCCRAC	2 cut(s)	99, 339
MreI	CGCCGGCG	1 cut(s)	119
MroNI	GCCGGC	1 cut(s)	119
MseI	TTAA	2 cut(s)	561, 1060
MspI	CCGG	4 cut(s)	120, 126, 168, 276
MspR9I	CCNGG	4 cut(s)	276, 277, 380, 822
Mva1269I	GAATGC	1 cut(s)	55
MvaI	CCWGG	2 cut(s)	380, 822
MvnI	CGCG	1 cut(s)	1052
MwoI	GCNNNNNNNGC	3 cut(s)	122, 173, 860
NaeI	GCCGGC	1 cut(s)	121
NarI	GGCGCC	2 cut(s)	123, 655
NciI	CCSGG	2 cut(s)	276, 277
NdeII	GATC	3 cut(s)	232, 628, 904
NgoMIV	GCCGGC	1 cut(s)	119
NlaIII	CATG	1 cut(s)	911
NlaIV	GGNNCC	8 cut(s)	124, 313, 329, 350, 481, 514, 656, 781
PagI	TCATGA	1 cut(s)	907
PctI	GAATGC	1 cut(s)	55
PdiI	GCCGGC	1 cut(s)	121
PfeI	GAWTC	4 cut(s)	265, 590, 817, 842
PkrI	GCNGC	3 cut(s)	118, 988, 1051
PleI	GAGTC	1 cut(s)	508
PluTI	GGCGCC	2 cut(s)	126, 658
PpsI	GAGTC	1 cut(s)	508
PpuMI	RGGWCCY	1 cut(s)	348
PshAI	GACNNNNGTC	1 cut(s)	678
Psp5II	RGGWCCY	1 cut(s)	348
Psp6I	CCWGG	2 cut(s)	378, 820
PspGI	CCWGG	2 cut(s)	378, 820
PspN4I	GGNNCC	8 cut(s)	124, 313, 329, 350, 481, 514, 656, 781
PspPI	GGNCC	3 cut(s)	348, 760, 824
PspPPI	RGGWCCY	1 cut(s)	348
PstI	CTGCAG	1 cut(s)	988
SalI	GTCGAC	1 cut(s)	1035
SaqAI	TTAA	2 cut(s)	561, 1060
SatI	GCNGC	3 cut(s)	117, 987, 1050
Sau3AI	GATC	3 cut(s)	232, 628, 904
Sau96I	GGNCC	3 cut(s)	348, 760, 824
SchI	GAGTC	1 cut(s)	509
ScrFI	CCNGG	4 cut(s)	276, 277, 380, 822
SetI	ASST	8 cut(s)	198, 350, 377, 404, 557, 673, 835, 920
SfaNI	GCATC	5 cut(s)	292, 684, 850, 863, 935
SfcI	CTRYAG	1 cut(s)	984
SfoI	GGCGCC	2 cut(s)	124, 656
SgrAI	CRCCGGYG	2 cut(s)	119, 167
SinI	GGWCC	2 cut(s)	348, 824
SmaI	CCCGGG	1 cut(s)	277
Sse9I	AATT	7 cut(s)	49, 70, 152, 487, 563, 741, 895
SsiI	CCGC	2 cut(s)	117, 1050
SspDI	GGCGCC	2 cut(s)	122, 654
SspMI	CTAG	3 cut(s)	600, 612, 915
StyD4I	CCNGG	4 cut(s)	274, 275, 378, 820
TaaI	ACNGT	1 cut(s)	145
TaqI	TCGA	5 cut(s)	156, 305, 787, 1036, 1056
TaqII	GACCGA	1 cut(s)	784
TasI	AATT	7 cut(s)	49, 70, 152, 487, 563, 741, 895
TauI	GCSGC	2 cut(s)	119, 1052
TfiI	GAWTC	4 cut(s)	265, 590, 817, 842
Tru1I	TTAA	2 cut(s)	561, 1060
Tru9I	TTAA	2 cut(s)	561, 1060
TscAI	CASTG	2 cut(s)	718, 724
TseI	GCWGC	1 cut(s)	986
TspDTI	ATGAA	2 cut(s)	230, 401
TspGWI	ACGGA	2 cut(s)	201, 340
TspMI	CCCGGG	1 cut(s)	275
TspRI	CASTG	2 cut(s)	718, 724
VpaK11BI	GGWCC	2 cut(s)	348, 824
XapI	RAATTY	2 cut(s)	152, 895
XmaI	CCCGGG	1 cut(s)	275
XmiI	GTMKAC	1 cut(s)	1036
XspI	CTAG	3 cut(s)	600, 612, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.