AT5G23130

Peptidoglycan-binding LysM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008434
Physical Location & Seq
Forward (+)
7781172 .. 7783620
2449 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G23130.1

Sequence Viewer

Length: 1194 bp
ATGTTGACGGAACGAGGAAGGCGAATTTCTGGTTTCAATGGGAGTTTCGAATTTAGCAATAGAAAATTCCGTGGTTATGGATTCGTAGATCGATCTCAAGGTTTCCATGAAAGGAGTCCTTCAAGATCATGTTCTGTTTCGAAAATCCTTCGTATCACGCCACCAACCTCGTCTCCACCGTCTTCGGCTTCTACATGCGCTGGTTATATCGAACACCGGGTCTCCAAGTTCGATACTCTCGCCGGCATTGCCATTAAGTATGGCGTTGAGGTTGCAGATATCACGAAGCTGAATGGGCTTGTAACTGATCTTCAGATGTTTGCTCTTGAGTCTCTCCGAATACCATTACCTGGAAGACATCCTCCTTCCCCATGCTTATCTAATGGCTCTCTAAATCATGGAGAGGATTGGTCCGAGCAAGCTTCATCCTCAGCTAGCAATGGCAACCACCAGGACGTATTTGACTCCTTCCAGTCTTTGAGGTTGAACCATTCAGAAAAGAAGATTTCTCCAGCCATGAACTCCTTGCAAGGTTATTATGGACTGAAACCAAAAAACAGAAGAGCTTCTGAAGGTTTTGGGATGGCAGTCTACAAGAACGAAGCTTCTCAACTCCAAGACAATGATCAGTATCTCACTCCCTTCCCCGCCACCAGTACTCCCTTATCCCACCACAGAAAATCAAGAAGCTTGGTAGATGCAGTTATCGCCGAGGTTAACCAATCACCCAACCCTTCAAAAGCAGGAGGAGGAGAAGTGAACTCTACTGATAAGCCAATGAGAAGACGCCAAAAATCTGAAGCCGATTTTAGTTCACGAGCTCCAGAATTGCTGTTGAAGGAAGAGAACAGAAGCAGCAGTGGCGCGTTTTCTGCAATAGCTGGAAAAAATTTAGCACTGAGATCCAAAGCATCAAGCAGAGCTAACTTATCAGCAGAAACCAGACATCTCAATTCCATACCAATCAATTTGATGGATGCTCCTGTGGGAGACAGCTTCTCAAGCGTGAGGAAATCTGTTAGCGCATCTAGTCTACAAGAACCAAACTGTAACAGCAACGGTTCATCGCTATGGCCAACCTCAAAGTGGACCCTGAAACCTGAGTTACTCACACAAGTAGCCATGGCTAGTTCTATTTTTGACGGATTGCCTAAGCCATTAACTGGTCGGAGAAACAAAAAGGCTGTGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

397

Amino Acids

43.21

Weight (kDa)

9.73

Isoelectric Point (pI)

57.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 350, 1163
AccI GTMKAC 2 cut(s) 591, 1033
AccII CGCG 1 cut(s) 866
AciI CCGC 1 cut(s) 648
AclWI GGATC 1 cut(s) 897
AcoI YGGCCR 1 cut(s) 1073
AcsI RAATTY 4 cut(s) 24, 50, 65, 889
AcuI CTGAAG 3 cut(s) 296, 591, 819
AcyI GRCGYC 1 cut(s) 787
AfaI GTAC 1 cut(s) 658
AfiI CCNNNNNNNGG 3 cut(s) 350, 1086, 1163
AgsI TTSAA 5 cut(s) 37, 123, 487, 738, 838
AjnI CCWGG 2 cut(s) 349, 450
Alw21I GWGCWC 1 cut(s) 823
Alw26I GTCTC 4 cut(s) 177, 226, 336, 984
AlwI GGATC 1 cut(s) 897
AoxI GGCC 1 cut(s) 1073
ApeKI GCWGC 1 cut(s) 855
ApoI RAATTY 4 cut(s) 24, 50, 65, 889
ArsI GACNNNNNNTTYG 2 cut(s) 204, 236
Asp700I GAANNNNTTC 1 cut(s) 565
AspLEI GCGC 3 cut(s) 200, 866, 1025
AspS9I GGNCC 2 cut(s) 411, 1089
AsuC2I CCSGG 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 717
AsuII TTCGAA 2 cut(s) 48, 140
AsuNHI GCTAGC 1 cut(s) 434
AvaII GGWCC 2 cut(s) 411, 1089
BalI TGGCCA 1 cut(s) 1075
BanII GRGCYC 1 cut(s) 823
BarI GAAGNNNNNNTAC 2 cut(s) 294, 326
BauI CACGAG 1 cut(s) 816
BbsI GAAGAC 3 cut(s) 174, 361, 790
Bbv12I GWGCWC 1 cut(s) 823
BbvCI CCTCAGC 1 cut(s) 430
BbvI GCAGC 1 cut(s) 867
BccI CCATC 2 cut(s) 577, 967
BciT130I CCWGG 2 cut(s) 351, 452
BclI TGATCA 1 cut(s) 625
BcnI CCSGG 1 cut(s) 218
BcoDI GTCTC 4 cut(s) 177, 226, 336, 984
BfaI CTAG 3 cut(s) 435, 1029, 1128
BisI GCNGC 1 cut(s) 856
BlsI GCNGC 1 cut(s) 857
BmcAI AGTACT 1 cut(s) 658
Bme1390I CCNGG 3 cut(s) 218, 351, 452
Bme18I GGWCC 2 cut(s) 411, 1089
BmgT120I GGNCC 2 cut(s) 411, 1089
BmiI GGNNCC 1 cut(s) 1091
BmrFI CCNGG 3 cut(s) 218, 351, 452
BmsI GCATC 4 cut(s) 688, 920, 967, 1034
BmtI GCTAGC 1 cut(s) 438
BpiI GAAGAC 3 cut(s) 174, 361, 790
BpmI CTGGAG 2 cut(s) 495, 807
Bpu10I CCTNAGC 2 cut(s) 430, 1152
Bpu14I TTCGAA 2 cut(s) 48, 140
BpuEI CTTGAG 3 cut(s) 81, 347, 985
BpuMI CCSGG 1 cut(s) 218
Bsa29I ATCGAT 1 cut(s) 91
BsaBI GATNNNNATC 1 cut(s) 630
BsaHI GRCGYC 1 cut(s) 787
BsaI GGTCTC 1 cut(s) 226
BsaJI CCNNGG 3 cut(s) 70, 711, 1122
BsaXI ACNNNNNCTCC 8 cut(s) 157, 187, 206, 236, 643, 673, 741, 771
Bsc4I CCNNNNNNNGG 3 cut(s) 350, 1086, 1163
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 3 cut(s) 472, 654, 1168
Bse3DI GCAATG 2 cut(s) 246, 445
Bse8I GATNNNNATC 1 cut(s) 630
BseBI CCWGG 2 cut(s) 351, 452
BseCI ATCGAT 1 cut(s) 91
BseDI CCNNGG 3 cut(s) 70, 711, 1122
BseGI GGATG 4 cut(s) 358, 425, 588, 982
BseJI GATNNNNATC 1 cut(s) 630
BseLI CCNNNNNNNGG 3 cut(s) 350, 1086, 1163
BseMI GCAATG 2 cut(s) 246, 445
BseMII CTCAG 3 cut(s) 444, 890, 1092
BseNI ACTGG 3 cut(s) 472, 654, 1168
BseRI GAGGAG 2 cut(s) 762, 765
BseXI GCAGC 1 cut(s) 867
Bsh1236I CGCG 1 cut(s) 866
BshFI GGCC 1 cut(s) 1075
BshVI ATCGAT 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 823
BsiSI CCGG 2 cut(s) 217, 243
BslI CCNNNNNNNGG 3 cut(s) 350, 1086, 1163
BsmAI GTCTC 4 cut(s) 177, 226, 336, 984
BsmBI CGTCTC 1 cut(s) 177
BsnI GGCC 1 cut(s) 1075
Bso31I GGTCTC 1 cut(s) 226
Bsp119I TTCGAA 2 cut(s) 48, 140
Bsp1286I GDGCHC 1 cut(s) 823
Bsp143I GATC 6 cut(s) 88, 92, 125, 307, 625, 902
Bsp19I CCATGG 1 cut(s) 1122
BspACI CCGC 1 cut(s) 648
BspANI GGCC 1 cut(s) 1075
BspCNI CTCAG 3 cut(s) 443, 891, 1093
BspDI ATCGAT 1 cut(s) 91
BspFNI CGCG 1 cut(s) 866
BspLI GGNNCC 1 cut(s) 1091
BspOI GCTAGC 1 cut(s) 438
BspPI GGATC 1 cut(s) 897
BspQI GCTCTTC 1 cut(s) 556
BspT104I TTCGAA 2 cut(s) 48, 140
BspTNI GGTCTC 1 cut(s) 226
BsrDI GCAATG 2 cut(s) 246, 445
BsrFI RCCGGY 1 cut(s) 242
BsrI ACTGG 3 cut(s) 472, 654, 1168
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 3 cut(s) 70, 711, 1122
BssMI GATC 6 cut(s) 88, 92, 125, 307, 625, 902
BssNI GRCGYC 1 cut(s) 787
BssSI CACGAG 1 cut(s) 816
BssT1I CCWWGG 1 cut(s) 1122
Bst2BI CACGAG 1 cut(s) 816
Bst2UI CCWGG 2 cut(s) 351, 452
Bst4CI ACNGT 3 cut(s) 180, 1049, 1061
Bst6I CTCTTC 2 cut(s) 556, 837
BstACI GRCGYC 1 cut(s) 787
BstBI TTCGAA 2 cut(s) 48, 140
BstC8I GCNNGC 3 cut(s) 244, 420, 436
BstDEI CTNAG 4 cut(s) 430, 899, 1101, 1152
BstDSI CCRYGG 2 cut(s) 70, 1122
BstF5I GGATG 4 cut(s) 358, 425, 588, 982
BstFNI CGCG 1 cut(s) 866
BstHHI GCGC 3 cut(s) 200, 866, 1025
BstKTI GATC 6 cut(s) 91, 95, 128, 310, 628, 905
BstMAI GTCTC 4 cut(s) 177, 226, 336, 984
BstMBI GATC 6 cut(s) 88, 92, 125, 307, 625, 902
BstMWI GCNNNNNNNGC 6 cut(s) 248, 295, 707, 861, 872, 1002
BstNI CCWGG 2 cut(s) 351, 452
BstNSI RCATGY 1 cut(s) 198
BstSCI CCNGG 3 cut(s) 216, 349, 450
BstUI CGCG 1 cut(s) 866
BstV1I GCAGC 1 cut(s) 867
BstV2I GAAGAC 3 cut(s) 174, 361, 790
BstX2I RGATCY 1 cut(s) 902
BstYI RGATCY 1 cut(s) 902
Bsu15I ATCGAT 1 cut(s) 91
BsuRI GGCC 1 cut(s) 1075
BsuTUI ATCGAT 1 cut(s) 91
BtgI CCRYGG 2 cut(s) 70, 1122
BtgZI GCGATG 1 cut(s) 1050
BtsCI GGATG 4 cut(s) 358, 425, 588, 982
BtsI GCAGTG 1 cut(s) 865
BtsIMutI CAGTG 2 cut(s) 865, 896
Cac8I GCNNGC 3 cut(s) 244, 420, 436
CfoI GCGC 3 cut(s) 200, 866, 1025
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 2 cut(s) 411, 1089
ClaI ATCGAT 1 cut(s) 91
CseI GACGC 1 cut(s) 795
Csp6I GTAC 1 cut(s) 657
CviAII CATG 7 cut(s) 107, 129, 195, 372, 398, 517, 1123
CviQI GTAC 1 cut(s) 657
DdeI CTNAG 4 cut(s) 430, 899, 1101, 1152
DpnI GATC 6 cut(s) 90, 94, 127, 309, 627, 904
DpnII GATC 6 cut(s) 88, 92, 125, 307, 625, 902
EaeI YGGCCR 1 cut(s) 1073
Eam1104I CTCTTC 2 cut(s) 556, 837
EarI CTCTTC 2 cut(s) 556, 837
Ecl136II GAGCTC 1 cut(s) 821
Eco130I CCWWGG 1 cut(s) 1122
Eco24I GRGCYC 1 cut(s) 823
Eco31I GGTCTC 1 cut(s) 226
Eco32I GATATC 1 cut(s) 280
Eco47I GGWCC 2 cut(s) 411, 1089
Eco53kI GAGCTC 1 cut(s) 821
Eco57I CTGAAG 3 cut(s) 296, 591, 819
EcoICRI GAGCTC 1 cut(s) 821
EcoRII CCWGG 2 cut(s) 349, 450
EcoRV GATATC 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 1122
EcoT38I GRGCYC 1 cut(s) 823
ErhI CCWWGG 1 cut(s) 1122
Esp3I CGTCTC 1 cut(s) 177
FaeI CATG 7 cut(s) 110, 132, 198, 375, 401, 520, 1126
FalI AAGNNNNNCTT 2 cut(s) 103, 135
FatI CATG 7 cut(s) 106, 128, 194, 371, 397, 516, 1122
FauI CCCGC 1 cut(s) 655
FbaI TGATCA 1 cut(s) 625
FblI GTMKAC 2 cut(s) 591, 1033
Fnu4HI GCNGC 1 cut(s) 856
FokI GGATG 4 cut(s) 345, 412, 595, 989
FriOI GRGCYC 1 cut(s) 823
Fsp4HI GCNGC 1 cut(s) 856
FspBI CTAG 3 cut(s) 435, 1029, 1128
GlaI GCGC 3 cut(s) 199, 865, 1024
GluI GCNGC 1 cut(s) 856
GsuI CTGGAG 2 cut(s) 495, 807
HaeIII GGCC 1 cut(s) 1075
HapII CCGG 2 cut(s) 217, 243
HgaI GACGC 1 cut(s) 795
HhaI GCGC 3 cut(s) 200, 866, 1025
Hin1I GRCGYC 1 cut(s) 787
Hin1II CATG 7 cut(s) 110, 132, 198, 375, 401, 520, 1126
Hin6I GCGC 3 cut(s) 198, 864, 1023
HinP1I GCGC 3 cut(s) 198, 864, 1023
HincII GTYRAC 2 cut(s) 6, 718
HindII GTYRAC 2 cut(s) 6, 718
HindIII AAGCTT 3 cut(s) 420, 603, 688
HinfI GANTC 4 cut(s) 81, 115, 329, 464
HpaI GTTAAC 1 cut(s) 718
HpaII CCGG 2 cut(s) 217, 243
HphI GGTGA 1 cut(s) 717
Hpy166II GTNNAC 8 cut(s) 6, 592, 718, 760, 815, 1034, 1089, 1189
Hpy188I TCNGA 7 cut(s) 315, 338, 415, 496, 571, 799, 1170
Hpy188III TCNNGA 6 cut(s) 123, 283, 326, 684, 816, 824
Hpy8I GTNNAC 8 cut(s) 6, 592, 718, 760, 815, 1034, 1089, 1189
HpyAV CCTTC 9 cut(s) 12, 129, 158, 375, 478, 566, 652, 744, 832
HpyCH4III ACNGT 3 cut(s) 180, 1049, 1061
HpyCH4IV ACGT 1 cut(s) 456
HpyCH4V TGCA 4 cut(s) 275, 529, 701, 875
HpyF10VI GCNNNNNNNGC 6 cut(s) 248, 295, 707, 861, 872, 1002
HpyF3I CTNAG 4 cut(s) 430, 899, 1101, 1152
HpySE526I ACGT 1 cut(s) 456
Hsp92I GRCGYC 1 cut(s) 787
Hsp92II CATG 7 cut(s) 110, 132, 198, 375, 401, 520, 1126
HspAI GCGC 3 cut(s) 198, 864, 1023
KroI GCCGGC 1 cut(s) 242
KroNI GCCGGC 1 cut(s) 244
Ksp22I TGATCA 1 cut(s) 625
KspAI GTTAAC 1 cut(s) 718
Kzo9I GATC 6 cut(s) 88, 92, 125, 307, 625, 902
LguI GCTCTTC 1 cut(s) 556
LmnI GCTCC 2 cut(s) 826, 985
Lsp1109I GCAGC 1 cut(s) 867
LweI GCATC 4 cut(s) 688, 920, 967, 1034
MaeI CTAG 3 cut(s) 435, 1029, 1128
MaeII ACGT 1 cut(s) 456
MaeIII GTNAC 3 cut(s) 301, 1049, 1104
MalI GATC 6 cut(s) 90, 94, 127, 309, 627, 904
MboI GATC 6 cut(s) 88, 92, 125, 307, 625, 902
MboII GAAGA 7 cut(s) 174, 302, 366, 514, 573, 795, 854
MflI RGATCY 1 cut(s) 902
MhlI GDGCHC 1 cut(s) 823
MlsI TGGCCA 1 cut(s) 1075
MluCI AATT 7 cut(s) 24, 50, 65, 827, 889, 952, 967
MluNI TGGCCA 1 cut(s) 1075
MlyI GAGTC 3 cut(s) 124, 338, 458
MmeI TCCRAC 1 cut(s) 1148
Mox20I TGGCCA 1 cut(s) 1075
MroNI GCCGGC 1 cut(s) 242
MroXI GAANNNNTTC 1 cut(s) 565
MscI TGGCCA 1 cut(s) 1075
MseI TTAA 3 cut(s) 255, 717, 1160
MslI CAYNNNNRTG 1 cut(s) 1069
Msp20I TGGCCA 1 cut(s) 1075
MspI CCGG 2 cut(s) 217, 243
MspR9I CCNGG 3 cut(s) 218, 351, 452
MvaI CCWGG 2 cut(s) 351, 452
MvnI CGCG 1 cut(s) 866
MwoI GCNNNNNNNGC 6 cut(s) 248, 295, 707, 861, 872, 1002
NaeI GCCGGC 1 cut(s) 244
NciI CCSGG 1 cut(s) 218
NcoI CCATGG 1 cut(s) 1122
NdeII GATC 6 cut(s) 88, 92, 125, 307, 625, 902
NgoMIV GCCGGC 1 cut(s) 242
NheI GCTAGC 1 cut(s) 434
NlaIII CATG 7 cut(s) 110, 132, 198, 375, 401, 520, 1126
NlaIV GGNNCC 1 cut(s) 1091
NmeAIII GCCGAG 1 cut(s) 736
NspI RCATGY 1 cut(s) 198
NspV TTCGAA 2 cut(s) 48, 140
PciSI GCTCTTC 1 cut(s) 556
PcsI WCGNNNNNNNCGW 2 cut(s) 19, 176
PdiI GCCGGC 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 565
PfeI GAWTC 1 cut(s) 81
PflMI CCANNNNNTGG 2 cut(s) 350, 1163
PkrI GCNGC 1 cut(s) 857
PleI GAGTC 3 cut(s) 123, 337, 458
PpsI GAGTC 3 cut(s) 123, 337, 458
Psp124BI GAGCTC 1 cut(s) 823
Psp6I CCWGG 2 cut(s) 349, 450
PspGI CCWGG 2 cut(s) 349, 450
PspN4I GGNNCC 1 cut(s) 1091
PspPI GGNCC 2 cut(s) 411, 1089
PsuI RGATCY 1 cut(s) 902
RsaI GTAC 1 cut(s) 658
RsaNI GTAC 1 cut(s) 657
RseI CAYNNNNRTG 1 cut(s) 1069
SacI GAGCTC 1 cut(s) 823
SapI GCTCTTC 1 cut(s) 556
SaqAI TTAA 3 cut(s) 255, 717, 1160
SatI GCNGC 1 cut(s) 856
Sau3AI GATC 6 cut(s) 88, 92, 125, 307, 625, 902
Sau96I GGNCC 2 cut(s) 411, 1089
ScaI AGTACT 1 cut(s) 658
SchI GAGTC 3 cut(s) 124, 338, 458
ScrFI CCNGG 3 cut(s) 218, 351, 452
SduI GDGCHC 1 cut(s) 823
SfaNI GCATC 4 cut(s) 688, 920, 967, 1034
SfuI TTCGAA 2 cut(s) 48, 140
SinI GGWCC 2 cut(s) 411, 1089
SmiMI CAYNNNNRTG 1 cut(s) 1069
SmlI CTYRAG 3 cut(s) 96, 326, 1000
SmoI CTYRAG 3 cut(s) 96, 326, 1000
Sse9I AATT 7 cut(s) 24, 50, 65, 827, 889, 952, 967
SsiI CCGC 1 cut(s) 648
SspMI CTAG 3 cut(s) 435, 1029, 1128
SstI GAGCTC 1 cut(s) 823
StyD4I CCNGG 3 cut(s) 216, 349, 450
StyI CCWWGG 1 cut(s) 1122
TaaI ACNGT 3 cut(s) 180, 1049, 1061
TaiI ACGT 1 cut(s) 459
TaqI TCGA 5 cut(s) 48, 91, 140, 210, 231
TasI AATT 7 cut(s) 24, 50, 65, 827, 889, 952, 967
TatI WGTACW 1 cut(s) 656
TfiI GAWTC 1 cut(s) 81
Tru1I TTAA 3 cut(s) 255, 717, 1160
Tru9I TTAA 3 cut(s) 255, 717, 1160
TscAI CASTG 2 cut(s) 865, 903
TseI GCWGC 1 cut(s) 855
TspDTI ATGAA 4 cut(s) 123, 414, 533, 1053
TspGWI ACGGA 3 cut(s) 23, 59, 1158
TspRI CASTG 2 cut(s) 865, 903
Van91I CCANNNNNTGG 2 cut(s) 350, 1163
VpaK11BI GGWCC 2 cut(s) 411, 1089
XapI RAATTY 4 cut(s) 24, 50, 65, 889
XceI RCATGY 1 cut(s) 198
XcmI CCANNNNNNNNNTGG 1 cut(s) 1083
XmiI GTMKAC 2 cut(s) 591, 1033
XmnI GAANNNNTTC 1 cut(s) 565
XspI CTAG 3 cut(s) 435, 1029, 1128
ZrmI AGTACT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.