Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0008434

Physical Location & Seq

Genomic Coordinates Reverse (-)

366854 .. 369665

Gene Structure 2812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1005700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGGGGAAGAAGGTATGCTGATGGAAAGCGAGTTTTGTTCTAGTTATGCGGATCAGGTGATTTCGTCCTCTTTGCATAACCGATCCAATAACTCCAACAGCAATCCAATGTCGGCTTCTTCTTCTTCTTCGTCTTCCCCTTTTCTCCCTGTTTCGTCGCCGCCGCGGTCTACCTCTCCCGCTTTGGTAGGTGGCGGAGGCGGTGGAGCAGGGTATCTAGAACACGTCGTTTCCAAATTCGACACGCTTGCTGGCGTCGCCATCAAATACGGCGTTGAGGTGGCCGACATCAAAAAGATGAACGGCCTCGTTACAGATCGCCAAATGTTTGGCCTCCGGTTTCTTCAGATTCCACTACCGGGGAGGCATCCTCCATCCCCATGTTTATCAGATGGTTCCAAGACTCCAGGCCAGACCAGTTCTGACCAGAACCCAACTCGCAGCATACAGTATGATCTGGTTGACTCATTCTGGTCCCTTAGAGTTACTCCTCCGAAGAAACCCTCCCCGGCTATGAACTCATTACAAAGTTATTACGGGCTGAAACCAAGAAATCAGAACTCTATAACTGAAGGTTTTGAAATGGCAGTCTACAAAAATGGAGGTGCCCATTATTTAGAAGAGGGACGATTCCTTGGAGCCTCACCAGCTTCTGACCAACCATTGAGACAATATCGAAAGTCAAGGAGCCTAGTTAAGTTGGATGAGAATGGTGAACTTTGTGATTCCATGTCTGCAGAAGGTGACTCTGAACCATTGGGGGATAAATGGATTAGAAGGCGTCAGAAATCTGAAGCAGACTTCTCTCGCACCCCTGAGAAGCTTTTGGGAGGTAACAGCGGCAGTGCCAGCAGTGCCGGGTTTTCAGCAATTTCAGGGCAGCGCTTAGCCCTTAGACCCACAGCAGCTAATAGAACTGCCTTAGGAAATGATGTTGAAGCTGGTGGCTTGAATCCTATACCAGTAGGTATGGGTGATTCTCTTATAGCAGATGGGTTATTTGGAGTGAGGAAGTCATCAAGCACGTCAAATTTGCAGGATCACGAGAGTAGCGGTTCTGCATCCATCTGGTCAACATCTAAGTGGAGTTTGAAGCCAGACTTGCAAGCCTTTTCAACCGCAGGAATTGCGAAACCAATATACGATGGTTTGCCTAAACCGATAACAGGTCGAAGAAAAACTGCACTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM

Protein Analysis

398

Amino Acids

42.23

Weight (kDa)

8.61

Isoelectric Point (pI)

56.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08200 AT5G23130
fragaria_vesca	FvH4_4g36950 FvH4_4g36950
malus_domestica	MD13G1005700.v1.1 MD16G1002200.v1.1
prunus_persica	Prupe.1G347300_v2.0.a1 Prupe.1G347300_v2.0.a1 Prupe.1G347300_v2.0.a1
pyrus_communis	pycom13g00470 pycom16g00350
rosa_chinensis	RchiOBHm_Chr4g0446721
rosa_laevigata	RLG00000005637
rosa_multiflora	Rmu_sc0001753.1_g000037
rosa_roxburghii	Rroxscaffold_5G00387060
rosa_rugosa	Rorug04G0374000 Rorug04G0374100 Rorug04G0374200
rosa_samantha	Rh4AG435600 Rh4BG444400 Rh4CG461700 Rh4DG443400
rosa_wichuraiana	Rw4G037230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	605
AccI	GTMKAC	2 cut(s)	170, 591
AccII	CGCG	1 cut(s)	166
AclWI	GGATC	3 cut(s)	60, 78, 1047
AcoI	YGGCCR	1 cut(s)	282
AcsI	RAATTY	2 cut(s)	236, 1030
AcuI	CTGAAG	3 cut(s)	329, 591, 813
AcyI	GRCGYC	2 cut(s)	255, 781
AfeI	AGCGCT	1 cut(s)	884
AfiI	CCNNNNNNNGG	2 cut(s)	359, 1166
AflIII	ACRYGT	1 cut(s)	223
AgsI	TTSAA	5 cut(s)	581, 938, 952, 1093, 1116
AjiI	CACGTC	2 cut(s)	226, 1026
AjnI	CCWGG	1 cut(s)	406
AjuI	GAANNNNNNNTTGG	2 cut(s)	100, 132
AluBI	AGCT	4 cut(s)	650, 823, 908, 941
AluI	AGCT	4 cut(s)	650, 823, 908, 941
Alw26I	GTCTC	1 cut(s)	661
AlwI	GGATC	3 cut(s)	60, 78, 1047
AlwNI	CAGNNNCTG	1 cut(s)	653
Aor51HI	AGCGCT	1 cut(s)	884
AoxI	GGCC	4 cut(s)	282, 304, 331, 409
ApeKI	GCWGC	3 cut(s)	441, 880, 905
ApoI	RAATTY	2 cut(s)	236, 1030
AspLEI	GCGC	1 cut(s)	885
AspS9I	GGNCC	1 cut(s)	474
AsuC2I	CCSGG	3 cut(s)	360, 509, 859
AsuHPI	GGTGA	5 cut(s)	70, 636, 725, 755, 986
AvaII	GGWCC	1 cut(s)	474
AxyI	CCTNAGG	1 cut(s)	922
BaeGI	GKGCMC	1 cut(s)	610
BanI	GGYRCC	1 cut(s)	605
BauI	CACGAG	1 cut(s)	1043
BbsI	GAAGAC	1 cut(s)	126
BbvI	GCAGC	3 cut(s)	453, 892, 917
BccI	CCATC	7 cut(s)	16, 269, 382, 386, 986, 1073, 1139
BceAI	ACGGC	2 cut(s)	286, 319
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BciT130I	CCWGG	1 cut(s)	408
BcnI	CCSGG	3 cut(s)	360, 509, 859
BcoDI	GTCTC	1 cut(s)	661
BfaI	CTAG	3 cut(s)	42, 218, 692
BfmI	CTRYAG	1 cut(s)	735
BfoI	RGCGCY	1 cut(s)	886
BisI	GCNGC	6 cut(s)	161, 164, 442, 841, 881, 906
BlpI	GCTNAGC	1 cut(s)	886
BlsI	GCNGC	6 cut(s)	162, 165, 443, 842, 882, 907
Bme1390I	CCNGG	4 cut(s)	360, 408, 509, 859
Bme18I	GGWCC	1 cut(s)	474
BmgBI	CACGTC	2 cut(s)	226, 1026
BmgT120I	GGNCC	1 cut(s)	474
BmiI	GGNNCC	5 cut(s)	397, 476, 607, 640, 689
BmrFI	CCNGG	4 cut(s)	360, 408, 509, 859
BmsI	GCATC	2 cut(s)	376, 1070
BpiI	GAAGAC	1 cut(s)	126
BplI	GAGNNNNNCTC	2 cut(s)	355, 387
BpmI	CTGGAG	1 cut(s)	390
Bpu1102I	GCTNAGC	1 cut(s)	886
BpuMI	CCSGG	3 cut(s)	360, 509, 859
BsaHI	GRCGYC	2 cut(s)	255, 781
BsaJI	CCNNGG	4 cut(s)	164, 359, 507, 634
BsaWI	WCCGGW	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	2 cut(s)	359, 1166
Bse1I	ACTGG	2 cut(s)	417, 962
Bse21I	CCTNAGG	1 cut(s)	922
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	4 cut(s)	164, 359, 507, 634
BseGI	GGATG	4 cut(s)	367, 374, 709, 1061
BseLI	CCNNNNNNNGG	2 cut(s)	359, 1166
BseMII	CTCAG	1 cut(s)	807
BseNI	ACTGG	2 cut(s)	417, 962
BseRI	GAGGAG	1 cut(s)	480
BseSI	GKGCMC	1 cut(s)	610
BseXI	GCAGC	3 cut(s)	453, 892, 917
BsgI	GTGCAG	1 cut(s)	1167
Bsh1236I	CGCG	1 cut(s)	166
BshFI	GGCC	4 cut(s)	284, 306, 333, 411
BshNI	GGYRCC	1 cut(s)	605
BsiSI	CCGG	4 cut(s)	337, 359, 509, 858
BslFI	GGGAC	2 cut(s)	460, 639
BslI	CCNNNNNNNGG	2 cut(s)	359, 1166
BsmAI	GTCTC	1 cut(s)	661
BsmFI	GGGAC	2 cut(s)	460, 639
BsnI	GGCC	4 cut(s)	284, 306, 333, 411
Bsp1286I	GDGCHC	1 cut(s)	610
Bsp143I	GATC	5 cut(s)	52, 83, 316, 454, 1039
Bsp1720I	GCTNAGC	1 cut(s)	886
BspANI	GGCC	4 cut(s)	284, 306, 333, 411
BspCNI	CTCAG	1 cut(s)	808
BspFNI	CGCG	1 cut(s)	166
BspLI	GGNNCC	5 cut(s)	397, 476, 607, 640, 689
BspMAI	CTGCAG	1 cut(s)	739
BspPI	GGATC	3 cut(s)	60, 78, 1047
BspT107I	GGYRCC	1 cut(s)	605
BsrI	ACTGG	2 cut(s)	417, 962
BssECI	CCNNGG	4 cut(s)	164, 359, 507, 634
BssMI	GATC	5 cut(s)	52, 83, 316, 454, 1039
BssNI	GRCGYC	2 cut(s)	255, 781
BssSI	CACGAG	1 cut(s)	1043
BssT1I	CCWWGG	1 cut(s)	634
Bst2BI	CACGAG	1 cut(s)	1043
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	1 cut(s)	450
Bst6I	CTCTTC	1 cut(s)	615
BstACI	GRCGYC	2 cut(s)	255, 781
BstAPI	GCANNNNNTGC	1 cut(s)	1127
BstC8I	GCNNGC	4 cut(s)	249, 253, 850, 1107
BstDEI	CTNAG	6 cut(s)	479, 816, 886, 893, 922, 1080
BstDSI	CCRYGG	1 cut(s)	164
BstF5I	GGATG	4 cut(s)	367, 374, 709, 1061
BstFNI	CGCG	1 cut(s)	166
BstH2I	RGCGCY	1 cut(s)	886
BstHHI	GCGC	1 cut(s)	885
BstKTI	GATC	5 cut(s)	55, 86, 319, 457, 1042
BstMAI	GTCTC	1 cut(s)	661
BstMBI	GATC	5 cut(s)	52, 83, 316, 454, 1039
BstMWI	GCNNNNNNNGC	6 cut(s)	257, 647, 849, 854, 1102, 1127
BstNI	CCWGG	1 cut(s)	408
BstSCI	CCNGG	4 cut(s)	358, 406, 507, 857
BstSFI	CTRYAG	1 cut(s)	735
BstSLI	GKGCMC	1 cut(s)	610
BstUI	CGCG	1 cut(s)	166
BstV1I	GCAGC	3 cut(s)	453, 892, 917
BstV2I	GAAGAC	1 cut(s)	126
BstXI	CCANNNNNNTGG	1 cut(s)	329
Bsu36I	CCTNAGG	1 cut(s)	922
BsuRI	GGCC	4 cut(s)	284, 306, 333, 411
BtgI	CCRYGG	1 cut(s)	164
BtrI	CACGTC	2 cut(s)	226, 1026
BtsCI	GGATG	4 cut(s)	367, 374, 709, 1061
BtsI	GCAGTG	2 cut(s)	850, 859
BtsIMutI	CAGTG	2 cut(s)	850, 859
Cac8I	GCNNGC	4 cut(s)	249, 253, 850, 1107
CaiI	CAGNNNCTG	1 cut(s)	653
CfoI	GCGC	1 cut(s)	885
Cfr13I	GGNCC	1 cut(s)	474
Cfr42I	CCGCGG	1 cut(s)	167
CseI	GACGC	2 cut(s)	244, 770
CviAII	CATG	2 cut(s)	381, 730
DdeI	CTNAG	6 cut(s)	479, 816, 886, 893, 922, 1080
DpnI	GATC	5 cut(s)	54, 85, 318, 456, 1041
DpnII	GATC	5 cut(s)	52, 83, 316, 454, 1039
EaeI	YGGCCR	1 cut(s)	282
Eam1104I	CTCTTC	1 cut(s)	615
EarI	CTCTTC	1 cut(s)	615
EciI	GGCGGA	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	634
Eco47I	GGWCC	1 cut(s)	474
Eco47III	AGCGCT	1 cut(s)	884
Eco57I	CTGAAG	3 cut(s)	329, 591, 813
Eco81I	CCTNAGG	1 cut(s)	922
EcoRII	CCWGG	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	634
ErhI	CCWWGG	1 cut(s)	634
FaeI	CATG	2 cut(s)	384, 733
FalI	AAGNNNNNCTT	2 cut(s)	1085, 1117
FaqI	GGGAC	2 cut(s)	460, 639
FatI	CATG	2 cut(s)	380, 729
FauI	CCCGC	1 cut(s)	187
FblI	GTMKAC	2 cut(s)	170, 591
Fnu4HI	GCNGC	6 cut(s)	161, 164, 442, 841, 881, 906
FokI	GGATG	4 cut(s)	354, 361, 716, 1048
Fsp4HI	GCNGC	6 cut(s)	161, 164, 442, 841, 881, 906
FspBI	CTAG	3 cut(s)	42, 218, 692
GlaI	GCGC	1 cut(s)	884
GluI	GCNGC	6 cut(s)	161, 164, 442, 841, 881, 906
GsuI	CTGGAG	1 cut(s)	390
HaeII	RGCGCY	1 cut(s)	886
HaeIII	GGCC	4 cut(s)	284, 306, 333, 411
HapII	CCGG	4 cut(s)	337, 359, 509, 858
HgaI	GACGC	2 cut(s)	244, 770
HhaI	GCGC	1 cut(s)	885
Hin1I	GRCGYC	2 cut(s)	255, 781
Hin1II	CATG	2 cut(s)	384, 733
Hin6I	GCGC	1 cut(s)	883
HinP1I	GCGC	1 cut(s)	883
HincII	GTYRAC	2 cut(s)	463, 1074
HindII	GTYRAC	2 cut(s)	463, 1074
HindIII	AAGCTT	1 cut(s)	821
HinfI	GANTC	8 cut(s)	349, 403, 464, 630, 725, 746, 952, 977
HpaII	CCGG	4 cut(s)	337, 359, 509, 858
HphI	GGTGA	5 cut(s)	70, 636, 725, 755, 986
Hpy166II	GTNNAC	5 cut(s)	171, 463, 592, 716, 1074
Hpy188I	TCNGA	9 cut(s)	348, 391, 424, 495, 558, 655, 751, 786, 793
Hpy188III	TCNNGA	2 cut(s)	218, 1043
Hpy8I	GTNNAC	5 cut(s)	171, 463, 592, 716, 1074
Hpy99I	CGWCG	3 cut(s)	160, 230, 260
HpyAV	CCTTC	4 cut(s)	5, 566, 734, 771
HpyCH4III	ACNGT	1 cut(s)	450
HpyCH4IV	ACGT	2 cut(s)	225, 1025
HpyCH4V	TGCA	6 cut(s)	76, 737, 1036, 1061, 1105, 1184
HpyF10VI	GCNNNNNNNGC	6 cut(s)	257, 647, 849, 854, 1102, 1127
HpyF3I	CTNAG	6 cut(s)	479, 816, 886, 893, 922, 1080
HpySE526I	ACGT	2 cut(s)	225, 1025
Hsp92I	GRCGYC	2 cut(s)	255, 781
Hsp92II	CATG	2 cut(s)	384, 733
HspAI	GCGC	1 cut(s)	883
KspI	CCGCGG	1 cut(s)	167
Kzo9I	GATC	5 cut(s)	52, 83, 316, 454, 1039
LmnI	GCTCC	3 cut(s)	206, 638, 687
Lsp1109I	GCAGC	3 cut(s)	453, 892, 917
LweI	GCATC	2 cut(s)	376, 1070
MaeI	CTAG	3 cut(s)	42, 218, 692
MaeII	ACGT	2 cut(s)	225, 1025
MaeIII	GTNAC	4 cut(s)	310, 484, 743, 833
MalI	GATC	5 cut(s)	54, 85, 318, 456, 1041
MboI	GATC	5 cut(s)	52, 83, 316, 454, 1039
MhlI	GDGCHC	1 cut(s)	610
MluCI	AATT	4 cut(s)	236, 870, 1030, 1125
MlyI	GAGTC	3 cut(s)	397, 458, 740
MmeI	TCCRAC	2 cut(s)	120, 681
MseI	TTAA	1 cut(s)	696
MslI	CAYNNNNRTG	2 cut(s)	379, 1081
MspA1I	CMGCKG	2 cut(s)	166, 840
MspI	CCGG	4 cut(s)	337, 359, 509, 858
MspR9I	CCNGG	4 cut(s)	360, 408, 509, 859
MvaI	CCWGG	1 cut(s)	408
MvnI	CGCG	1 cut(s)	166
MwoI	GCNNNNNNNGC	6 cut(s)	257, 647, 849, 854, 1102, 1127
NciI	CCSGG	3 cut(s)	360, 509, 859
NdeII	GATC	5 cut(s)	52, 83, 316, 454, 1039
NlaIII	CATG	2 cut(s)	384, 733
NlaIV	GGNNCC	5 cut(s)	397, 476, 607, 640, 689
NmuCI	GTSAC	1 cut(s)	743
PfeI	GAWTC	5 cut(s)	349, 630, 725, 952, 977
PkrI	GCNGC	6 cut(s)	162, 165, 443, 842, 882, 907
PleI	GAGTC	3 cut(s)	397, 458, 740
PpsI	GAGTC	3 cut(s)	397, 458, 740
Psp6I	CCWGG	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	5 cut(s)	397, 476, 607, 640, 689
PspPI	GGNCC	1 cut(s)	474
PstI	CTGCAG	1 cut(s)	739
PstNI	CAGNNNCTG	1 cut(s)	653
RseI	CAYNNNNRTG	2 cut(s)	379, 1081
SacII	CCGCGG	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	696
SatI	GCNGC	6 cut(s)	161, 164, 442, 841, 881, 906
Sau3AI	GATC	5 cut(s)	52, 83, 316, 454, 1039
Sau96I	GGNCC	1 cut(s)	474
SchI	GAGTC	3 cut(s)	397, 458, 740
ScrFI	CCNGG	4 cut(s)	360, 408, 509, 859
SduI	GDGCHC	1 cut(s)	610
SfaNI	GCATC	2 cut(s)	376, 1070
SfcI	CTRYAG	1 cut(s)	735
Sfr303I	CCGCGG	1 cut(s)	167
SgrBI	CCGCGG	1 cut(s)	167
SinI	GGWCC	1 cut(s)	474
SmiMI	CAYNNNNRTG	2 cut(s)	379, 1081
Sse9I	AATT	4 cut(s)	236, 870, 1030, 1125
SspMI	CTAG	3 cut(s)	42, 218, 692
StyD4I	CCNGG	4 cut(s)	358, 406, 507, 857
StyI	CCWWGG	1 cut(s)	634
TaaI	ACNGT	1 cut(s)	450
TaiI	ACGT	2 cut(s)	228, 1028
TaqI	TCGA	3 cut(s)	240, 676, 1171
TasI	AATT	4 cut(s)	236, 870, 1030, 1125
TauI	GCSGC	3 cut(s)	163, 166, 843
TfiI	GAWTC	5 cut(s)	349, 630, 725, 952, 977
Tru1I	TTAA	1 cut(s)	696
Tru9I	TTAA	1 cut(s)	696
TscAI	CASTG	2 cut(s)	850, 859
TseFI	GTSAC	1 cut(s)	743
TseI	GCWGC	3 cut(s)	441, 880, 905
Tsp45I	GTSAC	1 cut(s)	743
TspDTI	ATGAA	2 cut(s)	314, 530
TspRI	CASTG	2 cut(s)	850, 859
VpaK11BI	GGWCC	1 cut(s)	474
XapI	RAATTY	2 cut(s)	236, 1030
XbaI	TCTAGA	1 cut(s)	217
XmiI	GTMKAC	2 cut(s)	170, 591
XspI	CTAG	3 cut(s)	42, 218, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.