Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008434

Physical Location & Seq

Genomic Coordinates Reverse (-)

65810884 .. 65813749

Gene Structure 2866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00387060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGTCGTCTTCTTCTTCTTCTTCTTATACAATGTGTCTTCCCAATTCGCATTTCCAATCTTCTTCGAATTCGGATTCTCCTCCTTCTTCTCCTCCTCCTCCTCCTCTCAATTTGAGTGCCGCCGGCGCCGGATACATAGAGCATGCCGTCACCAAATACGACACGCTTGCCGGGGTCGCCATCAAATACGGCGTCGAGGTGGCAGATATCAGAAAGATGAATGGCCTGGTTACCGATCATCAAATGTTTGCCCTCAGATTTCTTCACATTCCACTTCCTGGGAGGCATCCTCCATCCCCTTGTTTATCAAATGGTTCACCAGGGAGCCAGAGTAGTTCAGAGAGGTCCCCCAGAGTTACTCCTCGGAAAGCCTCCCAGGCAATGAACTCTTTACAAAGTTATTATGGGCTGAAAGCAAGAAATCAGAACTCTATCAAAAGGGAGATTCTTGAAATGGCTCTCTACAAAAAGGAAGGCTCCCATTATTTAGAAGATGGGTCCTTACGTGGAGCCTCACCTTTCAGCCTTTGTAGAAAGTCAAGAAGCTTAGTTAAGTTGGATGAGAATCGTGAACTTTCTGATTCTGTGCCTAGTACAGAAACTAGAGAAGGTGACTCTGATCAGTTGGGAAAAAGGATTAGACGGCGCCAGAAATCTGAAGCTGACTTTTGTCGCACCCCTGAGATGCTGTTGGAAAATAACACTACCAGTGGCGGGTTTTCAGCCACAGCAATTACAGGGAAGTGCTTGGCCCTCAGACCAAAAGCAGCAGCCAATCGAACTGCTGACGTTGAAACTGGTGGGTTGAACCCTACTCCAGTAGGTCTTGGTGATTCTTTTATGGCATCAGATGGGTCTGGAGTGAGGAAGTCGTCAAGCACATCAAATTTGCAGGATCATGAATCTAGCGGTTCTGCATCAATCTGGTCAGCATCTAAATGGAGTTTGAAGCCAGATTTACAAGCGTTTTCAACTGCAGCCATTACAAAACCCATATTTGATGGTTTGCCTAAGCCTATGGTTGGTCGACGAAACAAAGCCGCGCTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM

Protein Analysis

350

Amino Acids

37.56

Weight (kDa)

9.38

Isoelectric Point (pI)

62.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08200 AT5G23130
fragaria_vesca	FvH4_4g36950 FvH4_4g36950
malus_domestica	MD13G1005700.v1.1 MD16G1002200.v1.1
prunus_persica	Prupe.1G347300_v2.0.a1 Prupe.1G347300_v2.0.a1 Prupe.1G347300_v2.0.a1
pyrus_communis	pycom13g00470 pycom16g00350
rosa_chinensis	RchiOBHm_Chr4g0446721
rosa_laevigata	RLG00000005637
rosa_multiflora	Rmu_sc0001753.1_g000037
rosa_roxburghii	Rroxscaffold_5G00387060
rosa_rugosa	Rorug04G0374000 Rorug04G0374100 Rorug04G0374200
rosa_samantha	Rh4AG435600 Rh4BG444400 Rh4CG461700 Rh4DG443400
rosa_wichuraiana	Rw4G037230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	125, 645
AccB7I	CCANNNNNTGG	1 cut(s)	278
AccI	GTMKAC	1 cut(s)	1027
AccII	CGCG	1 cut(s)	1043
AciI	CCGC	4 cut(s)	120, 714, 909, 1041
AclWI	GGATC	1 cut(s)	903
AcsI	RAATTY	2 cut(s)	67, 886
AcuI	CTGAAG	1 cut(s)	678
AcyI	GRCGYC	3 cut(s)	126, 192, 646
AfaI	GTAC	1 cut(s)	595
AfiI	CCNNNNNNNGG	3 cut(s)	278, 714, 1022
AgsI	TTSAA	5 cut(s)	452, 794, 808, 949, 972
AjnI	CCWGG	4 cut(s)	225, 277, 319, 375
AjuI	GAANNNNNNNTTGG	2 cut(s)	35, 67
AluBI	AGCT	2 cut(s)	546, 662
AluI	AGCT	2 cut(s)	546, 662
AlwI	GGATC	1 cut(s)	903
AoxI	GGCC	2 cut(s)	223, 750
ApeKI	GCWGC	3 cut(s)	767, 770, 977
ApoI	RAATTY	2 cut(s)	67, 886
ArsI	GACNNNNNNTTYG	2 cut(s)	177, 209
AspLEI	GCGC	3 cut(s)	128, 648, 1045
AspS9I	GGNCC	3 cut(s)	345, 498, 751
AsuC2I	CCSGG	1 cut(s)	172
AsuHPI	GGTGA	5 cut(s)	142, 309, 507, 623, 842
AsuII	TTCGAA	1 cut(s)	65
AvaII	GGWCC	2 cut(s)	345, 498
BanI	GGYRCC	2 cut(s)	125, 645
BbsI	GAAGAC	1 cut(s)	29
BbvI	GCAGC	3 cut(s)	779, 782, 989
BccI	CCATC	5 cut(s)	188, 301, 488, 845, 995
BceAI	ACGGC	3 cut(s)	131, 205, 659
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BciT130I	CCWGG	4 cut(s)	227, 279, 321, 377
BciVI	GTATCC	1 cut(s)	125
BclI	TGATCA	1 cut(s)	619
BcnI	CCSGG	1 cut(s)	172
BfaI	CTAG	3 cut(s)	591, 603, 906
BfmI	CTRYAG	1 cut(s)	975
BfoI	RGCGCY	2 cut(s)	129, 649
BfuI	GTATCC	1 cut(s)	125
BglI	GCCNNNNNGGC	1 cut(s)	377
BisI	GCNGC	5 cut(s)	120, 768, 771, 978, 1041
BlsI	GCNGC	5 cut(s)	121, 769, 772, 979, 1042
Bme1390I	CCNGG	5 cut(s)	172, 227, 279, 321, 377
Bme18I	GGWCC	2 cut(s)	345, 498
BmgT120I	GGNCC	3 cut(s)	345, 498, 751
BmiI	GGNNCC	7 cut(s)	127, 326, 347, 478, 499, 511, 647
BmrFI	CCNGG	5 cut(s)	172, 227, 279, 321, 377
BmsI	GCATC	5 cut(s)	295, 675, 854, 926, 941
BoxI	GACNNNNGTC	1 cut(s)	669
BpiI	GAAGAC	1 cut(s)	29
BplI	GAGNNNNNCTC	2 cut(s)	274, 306
BpmI	CTGGAG	2 cut(s)	801, 879
Bpu10I	CCTNAGC	1 cut(s)	1011
Bpu14I	TTCGAA	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	172
BsaAI	YACGTR	1 cut(s)	506
BsaBI	GATNNNNATC	1 cut(s)	564
BsaHI	GRCGYC	3 cut(s)	126, 192, 646
BsaJI	CCNNGG	5 cut(s)	171, 278, 320, 362, 375
BsaXI	ACNNNNNCTCC	2 cut(s)	316, 346
Bsc4I	CCNNNNNNNGG	3 cut(s)	278, 714, 1022
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	3 cut(s)	708, 802, 818
Bse3DI	GCAATG	1 cut(s)	387
Bse8I	GATNNNNATC	1 cut(s)	564
BseBI	CCWGG	4 cut(s)	227, 279, 321, 377
BseDI	CCNNGG	5 cut(s)	171, 278, 320, 362, 375
BseGI	GGATG	3 cut(s)	286, 293, 565
BseJI	GATNNNNATC	1 cut(s)	564
BseLI	CCNNNNNNNGG	3 cut(s)	278, 714, 1022
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	3 cut(s)	268, 672, 769
BseNI	ACTGG	3 cut(s)	708, 802, 818
BseRI	GAGGAG	7 cut(s)	69, 81, 84, 87, 90, 93, 351
BseXI	GCAGC	3 cut(s)	779, 782, 989
Bsh1236I	CGCG	1 cut(s)	1043
BshFI	GGCC	2 cut(s)	225, 752
BshNI	GGYRCC	2 cut(s)	125, 645
BsiSI	CCGG	3 cut(s)	123, 129, 171
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	3 cut(s)	278, 714, 1022
BsmFI	GGGAC	1 cut(s)	331
BsnI	GGCC	2 cut(s)	225, 752
Bsp119I	TTCGAA	1 cut(s)	65
Bsp143I	GATC	3 cut(s)	235, 619, 895
BspACI	CCGC	4 cut(s)	120, 714, 909, 1041
BspANI	GGCC	2 cut(s)	225, 752
BspCNI	CTCAG	3 cut(s)	267, 673, 768
BspFNI	CGCG	1 cut(s)	1043
BspHI	TCATGA	1 cut(s)	898
BspLI	GGNNCC	7 cut(s)	127, 326, 347, 478, 499, 511, 647
BspMAI	CTGCAG	1 cut(s)	979
BspPI	GGATC	1 cut(s)	903
BspT104I	TTCGAA	1 cut(s)	65
BspT107I	GGYRCC	2 cut(s)	125, 645
BsrDI	GCAATG	1 cut(s)	387
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	3 cut(s)	708, 802, 818
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	5 cut(s)	171, 278, 320, 362, 375
BssMI	GATC	3 cut(s)	235, 619, 895
BssNI	GRCGYC	3 cut(s)	126, 192, 646
Bst2UI	CCWGG	4 cut(s)	227, 279, 321, 377
BstACI	GRCGYC	3 cut(s)	126, 192, 646
BstBAI	YACGTR	1 cut(s)	506
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	3 cut(s)	124, 144, 168
BstDEI	CTNAG	5 cut(s)	254, 547, 681, 755, 1011
BstEII	GGTNACC	1 cut(s)	229
BstF5I	GGATG	3 cut(s)	286, 293, 565
BstFNI	CGCG	1 cut(s)	1043
BstH2I	RGCGCY	2 cut(s)	129, 649
BstHHI	GCGC	3 cut(s)	128, 648, 1045
BstKTI	GATC	3 cut(s)	238, 622, 898
BstMBI	GATC	3 cut(s)	235, 619, 895
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 176, 377
BstNI	CCWGG	4 cut(s)	227, 279, 321, 377
BstNSI	RCATGY	1 cut(s)	146
BstPAI	GACNNNNGTC	1 cut(s)	669
BstPI	GGTNACC	1 cut(s)	229
BstSCI	CCNGG	5 cut(s)	170, 225, 277, 319, 375
BstSFI	CTRYAG	1 cut(s)	975
BstUI	CGCG	1 cut(s)	1043
BstV1I	GCAGC	3 cut(s)	779, 782, 989
BstV2I	GAAGAC	1 cut(s)	29
BsuI	GTATCC	1 cut(s)	125
BsuRI	GGCC	2 cut(s)	225, 752
BtsCI	GGATG	3 cut(s)	286, 293, 565
BtsIMutI	CAGTG	1 cut(s)	715
Cac8I	GCNNGC	3 cut(s)	124, 144, 168
CciI	TCATGA	1 cut(s)	898
CfoI	GCGC	3 cut(s)	128, 648, 1045
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	3 cut(s)	345, 498, 751
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	594
CviAII	CATG	2 cut(s)	143, 899
CviQI	GTAC	1 cut(s)	594
DdeI	CTNAG	5 cut(s)	254, 547, 681, 755, 1011
DinI	GGCGCC	2 cut(s)	127, 647
DpnI	GATC	3 cut(s)	237, 621, 897
DpnII	GATC	3 cut(s)	235, 619, 895
Eco32I	GATATC	1 cut(s)	208
Eco47I	GGWCC	2 cut(s)	345, 498
Eco57I	CTGAAG	1 cut(s)	678
Eco91I	GGTNACC	1 cut(s)	229
EcoO109I	RGGNCCY	2 cut(s)	345, 498
EcoO65I	GGTNACC	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	67
EcoRII	CCWGG	4 cut(s)	225, 277, 319, 375
EcoRV	GATATC	1 cut(s)	208
EgeI	GGCGCC	2 cut(s)	127, 647
EheI	GGCGCC	2 cut(s)	127, 647
FaeI	CATG	2 cut(s)	146, 902
FaiI	YATR	8 cut(s)	27, 137, 144, 405, 842, 900, 995, 1019
FalI	AAGNNNNNCTT	1 cut(s)	1029
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	2 cut(s)	142, 898
FauI	CCCGC	1 cut(s)	707
FbaI	TGATCA	1 cut(s)	619
FblI	GTMKAC	1 cut(s)	1027
Fnu4HI	GCNGC	5 cut(s)	120, 768, 771, 978, 1041
FokI	GGATG	3 cut(s)	273, 280, 572
Fsp4HI	GCNGC	5 cut(s)	120, 768, 771, 978, 1041
FspBI	CTAG	3 cut(s)	591, 603, 906
GlaI	GCGC	3 cut(s)	127, 647, 1044
GluI	GCNGC	5 cut(s)	120, 768, 771, 978, 1041
GsuI	CTGGAG	2 cut(s)	801, 879
HaeII	RGCGCY	2 cut(s)	129, 649
HaeIII	GGCC	2 cut(s)	225, 752
HapII	CCGG	3 cut(s)	123, 129, 171
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	3 cut(s)	128, 648, 1045
Hin1I	GRCGYC	3 cut(s)	126, 192, 646
Hin1II	CATG	2 cut(s)	146, 902
Hin6I	GCGC	3 cut(s)	126, 646, 1043
HinP1I	GCGC	3 cut(s)	126, 646, 1043
HincII	GTYRAC	1 cut(s)	1028
HindII	GTYRAC	1 cut(s)	1028
HindIII	AAGCTT	1 cut(s)	544
HinfI	GANTC	7 cut(s)	74, 445, 565, 581, 614, 833, 902
HpaII	CCGG	3 cut(s)	123, 129, 171
HphI	GGTGA	5 cut(s)	142, 309, 507, 623, 842
Hpy166II	GTNNAC	3 cut(s)	317, 572, 1028
Hpy188III	TCNNGA	5 cut(s)	449, 540, 569, 858, 899
Hpy8I	GTNNAC	3 cut(s)	317, 572, 1028
Hpy99I	CGWCG	2 cut(s)	197, 1032
HpyAV	CCTTC	3 cut(s)	93, 467, 602
HpyCH4IV	ACGT	2 cut(s)	505, 789
HpyCH4V	TGCA	3 cut(s)	892, 917, 977
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 176, 377
HpyF3I	CTNAG	5 cut(s)	254, 547, 681, 755, 1011
HpySE526I	ACGT	2 cut(s)	505, 789
Hsp92I	GRCGYC	3 cut(s)	126, 192, 646
Hsp92II	CATG	2 cut(s)	146, 902
HspAI	GCGC	3 cut(s)	126, 646, 1043
KasI	GGCGCC	2 cut(s)	125, 645
KroI	GCCGGC	1 cut(s)	122
KroNI	GCCGGC	1 cut(s)	124
Ksp22I	TGATCA	1 cut(s)	619
Kzo9I	GATC	3 cut(s)	235, 619, 895
LmnI	GCTCC	3 cut(s)	324, 482, 509
Lsp1109I	GCAGC	3 cut(s)	779, 782, 989
LweI	GCATC	5 cut(s)	295, 675, 854, 926, 941
MaeI	CTAG	3 cut(s)	591, 603, 906
MaeII	ACGT	2 cut(s)	505, 789
MaeIII	GTNAC	4 cut(s)	148, 229, 355, 611
MalI	GATC	3 cut(s)	237, 621, 897
MboI	GATC	3 cut(s)	235, 619, 895
MluCI	AATT	5 cut(s)	43, 67, 109, 732, 886
Mly113I	GGCGCC	2 cut(s)	126, 646
MlyI	GAGTC	1 cut(s)	608
MmeI	TCCRAC	2 cut(s)	537, 672
MreI	CGCCGGCG	1 cut(s)	122
MroNI	GCCGGC	1 cut(s)	122
MseI	TTAA	2 cut(s)	552, 1051
MslI	CAYNNNNRTG	1 cut(s)	937
MspI	CCGG	3 cut(s)	123, 129, 171
MspR9I	CCNGG	5 cut(s)	172, 227, 279, 321, 377
MvaI	CCWGG	4 cut(s)	227, 279, 321, 377
MvnI	CGCG	1 cut(s)	1043
MwoI	GCNNNNNNNGC	3 cut(s)	125, 176, 377
NaeI	GCCGGC	1 cut(s)	124
NarI	GGCGCC	2 cut(s)	126, 646
NciI	CCSGG	1 cut(s)	172
NdeII	GATC	3 cut(s)	235, 619, 895
NgoMIV	GCCGGC	1 cut(s)	122
NlaIII	CATG	2 cut(s)	146, 902
NlaIV	GGNNCC	7 cut(s)	127, 326, 347, 478, 499, 511, 647
NmuCI	GTSAC	2 cut(s)	148, 611
NspI	RCATGY	1 cut(s)	146
NspV	TTCGAA	1 cut(s)	65
PaeI	GCATGC	1 cut(s)	146
PagI	TCATGA	1 cut(s)	898
PdiI	GCCGGC	1 cut(s)	124
PfeI	GAWTC	6 cut(s)	74, 445, 565, 581, 833, 902
PflMI	CCANNNNNTGG	1 cut(s)	278
PkrI	GCNGC	5 cut(s)	121, 769, 772, 979, 1042
PleI	GAGTC	1 cut(s)	608
PluTI	GGCGCC	2 cut(s)	129, 649
PpsI	GAGTC	1 cut(s)	608
Ppu21I	YACGTR	1 cut(s)	506
PpuMI	RGGWCCY	2 cut(s)	345, 498
PshAI	GACNNNNGTC	1 cut(s)	669
Psp5II	RGGWCCY	2 cut(s)	345, 498
Psp6I	CCWGG	4 cut(s)	225, 277, 319, 375
PspEI	GGTNACC	1 cut(s)	229
PspGI	CCWGG	4 cut(s)	225, 277, 319, 375
PspN4I	GGNNCC	7 cut(s)	127, 326, 347, 478, 499, 511, 647
PspPI	GGNCC	3 cut(s)	345, 498, 751
PspPPI	RGGWCCY	2 cut(s)	345, 498
PstI	CTGCAG	1 cut(s)	979
RsaI	GTAC	1 cut(s)	595
RsaNI	GTAC	1 cut(s)	594
RseI	CAYNNNNRTG	1 cut(s)	937
SalI	GTCGAC	1 cut(s)	1026
SaqAI	TTAA	2 cut(s)	552, 1051
SatI	GCNGC	5 cut(s)	120, 768, 771, 978, 1041
Sau3AI	GATC	3 cut(s)	235, 619, 895
Sau96I	GGNCC	3 cut(s)	345, 498, 751
SchI	GAGTC	1 cut(s)	608
ScrFI	CCNGG	5 cut(s)	172, 227, 279, 321, 377
SetI	ASST	9 cut(s)	201, 347, 508, 520, 548, 613, 664, 792, 826
SfaNI	GCATC	5 cut(s)	295, 675, 854, 926, 941
SfcI	CTRYAG	1 cut(s)	975
SfoI	GGCGCC	2 cut(s)	127, 647
SfuI	TTCGAA	1 cut(s)	65
SgrAI	CRCCGGYG	1 cut(s)	122
SinI	GGWCC	2 cut(s)	345, 498
SmiMI	CAYNNNNRTG	1 cut(s)	937
SphI	GCATGC	1 cut(s)	146
Sse9I	AATT	5 cut(s)	43, 67, 109, 732, 886
SsiI	CCGC	4 cut(s)	120, 714, 909, 1041
SspDI	GGCGCC	2 cut(s)	125, 645
SspMI	CTAG	3 cut(s)	591, 603, 906
StyD4I	CCNGG	5 cut(s)	170, 225, 277, 319, 375
TaiI	ACGT	2 cut(s)	508, 792
TaqI	TCGA	4 cut(s)	65, 195, 778, 1027
TasI	AATT	5 cut(s)	43, 67, 109, 732, 886
TatI	WGTACW	1 cut(s)	593
TauI	GCSGC	2 cut(s)	122, 1043
TfiI	GAWTC	6 cut(s)	74, 445, 565, 581, 833, 902
Tru1I	TTAA	2 cut(s)	552, 1051
Tru9I	TTAA	2 cut(s)	552, 1051
TscAI	CASTG	1 cut(s)	715
TseFI	GTSAC	2 cut(s)	148, 611
TseI	GCWGC	3 cut(s)	767, 770, 977
Tsp45I	GTSAC	2 cut(s)	148, 611
TspDTI	ATGAA	3 cut(s)	233, 398, 915
TspRI	CASTG	1 cut(s)	715
Van91I	CCANNNNNTGG	1 cut(s)	278
VpaK11BI	GGWCC	2 cut(s)	345, 498
XapI	RAATTY	2 cut(s)	67, 886
XceI	RCATGY	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	1027
XspI	CTAG	3 cut(s)	591, 603, 906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.