Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0008434

Physical Location & Seq

Genomic Coordinates Reverse (-)

58412355 .. 58415244

Gene Structure 2890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG444400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGTCGTCTTCTTCGTTTTCTTCTTCTTCTTCTTATACAATGTGTCTTCCCAATTCGCATTTCCAATCTTCTCCGAATTCGGATTCTCCTCCTTCTTCTCCTCCTCCTCCTCCTCTCAATTTGAGTGCCGCCGGCGCCGGATACATAGAACATGCCGTCACCAAATACGACACGCTCGCCGGGGTCGCCATCAAATACGGCGTCGAGGTGACAGATATCAGAAAGATGAATGGCCTGGTTACCGATCATCAAATGTTTGCCCTCAGATTTCTTCACATTCCACTACCTGGGAGGCATCCTCCATCCCCTTGTTTATCAAATGGTTCACCAGGGAGCCAGAGTAGTTCAGAGAGGTCTCCCAGAGTTACTCCTCGGAAAGCCTCCCAGGCAATGAACTCTTTACAAAGTTATTATGGGCTGAAAGCAAGAAATCAGAACTCTATCAAAAGGGAGATTCTTGAAATGGCCCTCTACAAAAAGGAAGGCTCCCATTATTTAGAAGATGGGTCCTTACTTGGAGCCTCACCTTTCAGCCTTTGTAGAAAGTCAAGAAGCTTAGTTAAGTTGGATGAGAATCGTGAACTTTCTGATTCTGTGCCTAGTACAGAAACTAGAGAAGGCGACTCTGATCAGTTGGGAAAAAGGATTAGACGGCGCCAGAAATCTGAAGCTGACTTTTGTCGCACCCCTGAGATGCTGTTGGAAAATAACACTACCAGTGGCGGGTTTTCAGCCACAGCAATTACAGGGAAGTGCTTGGCCCTCAGACCAAAAGCAGCAGCCAATCGAATTGCTGATGTTGAAACTGGTGGGTTGAACCCTACTCCAGTAGGTCTTGGTGATTCTTTTATGGCATCAGATGGGTCTGGAGTGAGGAAGTCGTCAAGCACATCAAATTTGCAGGATCATGAATCTAGCTGTTCTGCATCAATCTGGTCAGCATCTAAATGGAGTTTGAAGCCAGATTTACAAGCGTTTTCAACTGCAGCCATTACAAAACCCATATTTGATGGCTTGCCTAAGCCTATGGTTGGTCGACGAAACAAAGCCGCGCTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM

Protein Analysis

353

Amino Acids

37.93

Weight (kDa)

9.24

Isoelectric Point (pI)

64.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08200 AT5G23130
fragaria_vesca	FvH4_4g36950 FvH4_4g36950
malus_domestica	MD13G1005700.v1.1 MD16G1002200.v1.1
prunus_persica	Prupe.1G347300_v2.0.a1 Prupe.1G347300_v2.0.a1 Prupe.1G347300_v2.0.a1
pyrus_communis	pycom13g00470 pycom16g00350
rosa_chinensis	RchiOBHm_Chr4g0446721
rosa_laevigata	RLG00000005637
rosa_multiflora	Rmu_sc0001753.1_g000037
rosa_roxburghii	Rroxscaffold_5G00387060
rosa_rugosa	Rorug04G0374000 Rorug04G0374100 Rorug04G0374200
rosa_samantha	Rh4AG435600 Rh4BG444400 Rh4CG461700 Rh4DG443400
rosa_wichuraiana	Rw4G037230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	134, 654
AccB7I	CCANNNNNTGG	1 cut(s)	287
AccI	GTMKAC	1 cut(s)	1036
AccII	CGCG	1 cut(s)	1052
AciI	CCGC	3 cut(s)	129, 723, 1050
AclWI	GGATC	1 cut(s)	912
AcsI	RAATTY	2 cut(s)	76, 895
AcuI	CTGAAG	1 cut(s)	687
AcyI	GRCGYC	3 cut(s)	135, 201, 655
AfaI	GTAC	1 cut(s)	604
AfiI	CCNNNNNNNGG	3 cut(s)	287, 723, 1031
AgsI	TTSAA	5 cut(s)	461, 803, 817, 958, 981
AjnI	CCWGG	4 cut(s)	234, 286, 328, 384
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	3 cut(s)	555, 671, 918
AluI	AGCT	3 cut(s)	555, 671, 918
Alw26I	GTCTC	1 cut(s)	360
AlwI	GGATC	1 cut(s)	912
AoxI	GGCC	3 cut(s)	232, 465, 759
ApeKI	GCWGC	3 cut(s)	776, 779, 986
ApoI	RAATTY	2 cut(s)	76, 895
ArsI	GACNNNNNNTTYG	2 cut(s)	186, 218
AspLEI	GCGC	3 cut(s)	137, 657, 1054
AspS9I	GGNCC	3 cut(s)	466, 507, 760
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	5 cut(s)	151, 220, 318, 516, 851
AvaII	GGWCC	1 cut(s)	507
BanI	GGYRCC	2 cut(s)	134, 654
BbsI	GAAGAC	1 cut(s)	38
BbvI	GCAGC	3 cut(s)	788, 791, 998
BccI	CCATC	5 cut(s)	197, 310, 497, 854, 1004
BceAI	ACGGC	3 cut(s)	140, 214, 668
BciT130I	CCWGG	4 cut(s)	236, 288, 330, 386
BciVI	GTATCC	1 cut(s)	134
BclI	TGATCA	1 cut(s)	628
BcnI	CCSGG	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	360
BfaI	CTAG	3 cut(s)	600, 612, 915
BfmI	CTRYAG	1 cut(s)	984
BfoI	RGCGCY	2 cut(s)	138, 658
BfuI	GTATCC	1 cut(s)	134
BglI	GCCNNNNNGGC	1 cut(s)	386
BisI	GCNGC	5 cut(s)	129, 777, 780, 987, 1050
BlsI	GCNGC	5 cut(s)	130, 778, 781, 988, 1051
Bme1390I	CCNGG	5 cut(s)	181, 236, 288, 330, 386
Bme18I	GGWCC	1 cut(s)	507
BmgT120I	GGNCC	3 cut(s)	466, 507, 760
BmiI	GGNNCC	6 cut(s)	136, 335, 487, 508, 520, 656
BmrFI	CCNGG	5 cut(s)	181, 236, 288, 330, 386
BmsI	GCATC	5 cut(s)	304, 684, 863, 935, 950
BoxI	GACNNNNGTC	1 cut(s)	678
BpiI	GAAGAC	1 cut(s)	38
BplI	GAGNNNNNCTC	2 cut(s)	283, 315
BpmI	CTGGAG	2 cut(s)	810, 888
Bpu10I	CCTNAGC	1 cut(s)	1020
BpuMI	CCSGG	1 cut(s)	181
BsaBI	GATNNNNATC	1 cut(s)	573
BsaHI	GRCGYC	3 cut(s)	135, 201, 655
BsaI	GGTCTC	1 cut(s)	360
BsaJI	CCNNGG	5 cut(s)	180, 287, 329, 371, 384
BsaXI	ACNNNNNCTCC	2 cut(s)	325, 355
Bsc4I	CCNNNNNNNGG	3 cut(s)	287, 723, 1031
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	3 cut(s)	717, 811, 827
Bse3DI	GCAATG	1 cut(s)	396
Bse8I	GATNNNNATC	1 cut(s)	573
BseBI	CCWGG	4 cut(s)	236, 288, 330, 386
BseDI	CCNNGG	5 cut(s)	180, 287, 329, 371, 384
BseGI	GGATG	3 cut(s)	295, 302, 574
BseJI	GATNNNNATC	1 cut(s)	573
BseLI	CCNNNNNNNGG	3 cut(s)	287, 723, 1031
BseMI	GCAATG	1 cut(s)	396
BseMII	CTCAG	3 cut(s)	277, 681, 778
BseNI	ACTGG	3 cut(s)	717, 811, 827
BseRI	GAGGAG	7 cut(s)	78, 90, 93, 96, 99, 102, 360
BseXI	GCAGC	3 cut(s)	788, 791, 998
Bsh1236I	CGCG	1 cut(s)	1052
BshFI	GGCC	3 cut(s)	234, 467, 761
BshNI	GGYRCC	2 cut(s)	134, 654
BsiSI	CCGG	3 cut(s)	132, 138, 180
BslI	CCNNNNNNNGG	3 cut(s)	287, 723, 1031
BsmAI	GTCTC	1 cut(s)	360
BsnI	GGCC	3 cut(s)	234, 467, 761
Bso31I	GGTCTC	1 cut(s)	360
Bsp143I	GATC	3 cut(s)	244, 628, 904
BspACI	CCGC	3 cut(s)	129, 723, 1050
BspANI	GGCC	3 cut(s)	234, 467, 761
BspCNI	CTCAG	3 cut(s)	276, 682, 777
BspFNI	CGCG	1 cut(s)	1052
BspHI	TCATGA	1 cut(s)	907
BspLI	GGNNCC	6 cut(s)	136, 335, 487, 508, 520, 656
BspMAI	CTGCAG	1 cut(s)	988
BspPI	GGATC	1 cut(s)	912
BspT107I	GGYRCC	2 cut(s)	134, 654
BspTNI	GGTCTC	1 cut(s)	360
BsrDI	GCAATG	1 cut(s)	396
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	3 cut(s)	717, 811, 827
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	5 cut(s)	180, 287, 329, 371, 384
BssMI	GATC	3 cut(s)	244, 628, 904
BssNI	GRCGYC	3 cut(s)	135, 201, 655
Bst2UI	CCWGG	4 cut(s)	236, 288, 330, 386
BstACI	GRCGYC	3 cut(s)	135, 201, 655
BstC8I	GCNNGC	3 cut(s)	133, 177, 1016
BstDEI	CTNAG	5 cut(s)	263, 556, 690, 764, 1020
BstEII	GGTNACC	1 cut(s)	238
BstF5I	GGATG	3 cut(s)	295, 302, 574
BstFNI	CGCG	1 cut(s)	1052
BstH2I	RGCGCY	2 cut(s)	138, 658
BstHHI	GCGC	3 cut(s)	137, 657, 1054
BstKTI	GATC	3 cut(s)	247, 631, 907
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	3 cut(s)	244, 628, 904
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 185, 386
BstNI	CCWGG	4 cut(s)	236, 288, 330, 386
BstNSI	RCATGY	1 cut(s)	155
BstPAI	GACNNNNGTC	1 cut(s)	678
BstPI	GGTNACC	1 cut(s)	238
BstSCI	CCNGG	5 cut(s)	179, 234, 286, 328, 384
BstSFI	CTRYAG	1 cut(s)	984
BstUI	CGCG	1 cut(s)	1052
BstV1I	GCAGC	3 cut(s)	788, 791, 998
BstV2I	GAAGAC	1 cut(s)	38
BsuI	GTATCC	1 cut(s)	134
BsuRI	GGCC	3 cut(s)	234, 467, 761
BtsCI	GGATG	3 cut(s)	295, 302, 574
BtsIMutI	CAGTG	1 cut(s)	724
Cac8I	GCNNGC	3 cut(s)	133, 177, 1016
CciI	TCATGA	1 cut(s)	907
CfoI	GCGC	3 cut(s)	137, 657, 1054
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	3 cut(s)	466, 507, 760
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	603
CviAII	CATG	2 cut(s)	152, 908
CviQI	GTAC	1 cut(s)	603
DdeI	CTNAG	5 cut(s)	263, 556, 690, 764, 1020
DinI	GGCGCC	2 cut(s)	136, 656
DpnI	GATC	3 cut(s)	246, 630, 906
DpnII	GATC	3 cut(s)	244, 628, 904
Eco31I	GGTCTC	1 cut(s)	360
Eco32I	GATATC	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	507
Eco57I	CTGAAG	1 cut(s)	687
Eco91I	GGTNACC	1 cut(s)	238
EcoO109I	RGGNCCY	1 cut(s)	507
EcoO65I	GGTNACC	1 cut(s)	238
EcoRI	GAATTC	1 cut(s)	76
EcoRII	CCWGG	4 cut(s)	234, 286, 328, 384
EcoRV	GATATC	1 cut(s)	217
EgeI	GGCGCC	2 cut(s)	136, 656
EheI	GGCGCC	2 cut(s)	136, 656
FaeI	CATG	2 cut(s)	155, 911
FaiI	YATR	8 cut(s)	36, 146, 153, 414, 851, 909, 1004, 1028
FalI	AAGNNNNNCTT	1 cut(s)	1038
FatI	CATG	2 cut(s)	151, 907
FauI	CCCGC	1 cut(s)	716
FbaI	TGATCA	1 cut(s)	628
FblI	GTMKAC	1 cut(s)	1036
Fnu4HI	GCNGC	5 cut(s)	129, 777, 780, 987, 1050
FokI	GGATG	3 cut(s)	282, 289, 581
Fsp4HI	GCNGC	5 cut(s)	129, 777, 780, 987, 1050
FspBI	CTAG	3 cut(s)	600, 612, 915
GlaI	GCGC	3 cut(s)	136, 656, 1053
GluI	GCNGC	5 cut(s)	129, 777, 780, 987, 1050
GsuI	CTGGAG	2 cut(s)	810, 888
HaeII	RGCGCY	2 cut(s)	138, 658
HaeIII	GGCC	3 cut(s)	234, 467, 761
HapII	CCGG	3 cut(s)	132, 138, 180
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	3 cut(s)	137, 657, 1054
Hin1I	GRCGYC	3 cut(s)	135, 201, 655
Hin1II	CATG	2 cut(s)	155, 911
Hin6I	GCGC	3 cut(s)	135, 655, 1052
HinP1I	GCGC	3 cut(s)	135, 655, 1052
HincII	GTYRAC	1 cut(s)	1037
HindII	GTYRAC	1 cut(s)	1037
HindIII	AAGCTT	1 cut(s)	553
HinfI	GANTC	7 cut(s)	83, 454, 574, 590, 623, 842, 911
HpaII	CCGG	3 cut(s)	132, 138, 180
HphI	GGTGA	5 cut(s)	151, 220, 318, 516, 851
Hpy166II	GTNNAC	3 cut(s)	326, 581, 1037
Hpy188III	TCNNGA	5 cut(s)	458, 549, 578, 867, 908
Hpy8I	GTNNAC	3 cut(s)	326, 581, 1037
Hpy99I	CGWCG	2 cut(s)	206, 1041
HpyAV	CCTTC	3 cut(s)	102, 476, 611
HpyCH4V	TGCA	3 cut(s)	901, 926, 986
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 185, 386
HpyF3I	CTNAG	5 cut(s)	263, 556, 690, 764, 1020
Hsp92I	GRCGYC	3 cut(s)	135, 201, 655
Hsp92II	CATG	2 cut(s)	155, 911
HspAI	GCGC	3 cut(s)	135, 655, 1052
KasI	GGCGCC	2 cut(s)	134, 654
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
Ksp22I	TGATCA	1 cut(s)	628
Kzo9I	GATC	3 cut(s)	244, 628, 904
LmnI	GCTCC	3 cut(s)	333, 491, 518
Lsp1109I	GCAGC	3 cut(s)	788, 791, 998
LweI	GCATC	5 cut(s)	304, 684, 863, 935, 950
MaeI	CTAG	3 cut(s)	600, 612, 915
MaeIII	GTNAC	4 cut(s)	157, 208, 238, 364
MalI	GATC	3 cut(s)	246, 630, 906
MboI	GATC	3 cut(s)	244, 628, 904
MluCI	AATT	6 cut(s)	52, 76, 118, 741, 789, 895
Mly113I	GGCGCC	2 cut(s)	135, 655
MlyI	GAGTC	1 cut(s)	617
MmeI	TCCRAC	2 cut(s)	546, 681
MreI	CGCCGGCG	1 cut(s)	131
MroNI	GCCGGC	1 cut(s)	131
MseI	TTAA	2 cut(s)	561, 1060
MslI	CAYNNNNRTG	1 cut(s)	946
MspI	CCGG	3 cut(s)	132, 138, 180
MspR9I	CCNGG	5 cut(s)	181, 236, 288, 330, 386
MvaI	CCWGG	4 cut(s)	236, 288, 330, 386
MvnI	CGCG	1 cut(s)	1052
MwoI	GCNNNNNNNGC	3 cut(s)	134, 185, 386
NaeI	GCCGGC	1 cut(s)	133
NarI	GGCGCC	2 cut(s)	135, 655
NciI	CCSGG	1 cut(s)	181
NdeII	GATC	3 cut(s)	244, 628, 904
NgoMIV	GCCGGC	1 cut(s)	131
NlaIII	CATG	2 cut(s)	155, 911
NlaIV	GGNNCC	6 cut(s)	136, 335, 487, 508, 520, 656
NmuCI	GTSAC	2 cut(s)	157, 208
NspI	RCATGY	1 cut(s)	155
PagI	TCATGA	1 cut(s)	907
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PdiI	GCCGGC	1 cut(s)	133
PfeI	GAWTC	6 cut(s)	83, 454, 574, 590, 842, 911
PflMI	CCANNNNNTGG	1 cut(s)	287
PkrI	GCNGC	5 cut(s)	130, 778, 781, 988, 1051
PleI	GAGTC	1 cut(s)	617
PluTI	GGCGCC	2 cut(s)	138, 658
PpsI	GAGTC	1 cut(s)	617
PpuMI	RGGWCCY	1 cut(s)	507
PshAI	GACNNNNGTC	1 cut(s)	678
Psp5II	RGGWCCY	1 cut(s)	507
Psp6I	CCWGG	4 cut(s)	234, 286, 328, 384
PspEI	GGTNACC	1 cut(s)	238
PspGI	CCWGG	4 cut(s)	234, 286, 328, 384
PspN4I	GGNNCC	6 cut(s)	136, 335, 487, 508, 520, 656
PspPI	GGNCC	3 cut(s)	466, 507, 760
PspPPI	RGGWCCY	1 cut(s)	507
PstI	CTGCAG	1 cut(s)	988
RsaI	GTAC	1 cut(s)	604
RsaNI	GTAC	1 cut(s)	603
RseI	CAYNNNNRTG	1 cut(s)	946
SalI	GTCGAC	1 cut(s)	1035
SaqAI	TTAA	2 cut(s)	561, 1060
SatI	GCNGC	5 cut(s)	129, 777, 780, 987, 1050
Sau3AI	GATC	3 cut(s)	244, 628, 904
Sau96I	GGNCC	3 cut(s)	466, 507, 760
SchI	GAGTC	1 cut(s)	617
ScrFI	CCNGG	5 cut(s)	181, 236, 288, 330, 386
SetI	ASST	8 cut(s)	210, 289, 356, 529, 557, 673, 835, 920
SfaNI	GCATC	5 cut(s)	304, 684, 863, 935, 950
SfcI	CTRYAG	1 cut(s)	984
SfoI	GGCGCC	2 cut(s)	136, 656
SgrAI	CRCCGGYG	1 cut(s)	131
SinI	GGWCC	1 cut(s)	507
SmiMI	CAYNNNNRTG	1 cut(s)	946
Sse9I	AATT	6 cut(s)	52, 76, 118, 741, 789, 895
SsiI	CCGC	3 cut(s)	129, 723, 1050
SspDI	GGCGCC	2 cut(s)	134, 654
SspMI	CTAG	3 cut(s)	600, 612, 915
StyD4I	CCNGG	5 cut(s)	179, 234, 286, 328, 384
TaqI	TCGA	3 cut(s)	204, 787, 1036
TasI	AATT	6 cut(s)	52, 76, 118, 741, 789, 895
TatI	WGTACW	1 cut(s)	602
TauI	GCSGC	2 cut(s)	131, 1052
TfiI	GAWTC	6 cut(s)	83, 454, 574, 590, 842, 911
Tru1I	TTAA	2 cut(s)	561, 1060
Tru9I	TTAA	2 cut(s)	561, 1060
TscAI	CASTG	1 cut(s)	724
TseFI	GTSAC	2 cut(s)	157, 208
TseI	GCWGC	3 cut(s)	776, 779, 986
Tsp45I	GTSAC	2 cut(s)	157, 208
TspDTI	ATGAA	3 cut(s)	242, 407, 924
TspRI	CASTG	1 cut(s)	724
Van91I	CCANNNNNTGG	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	507
XapI	RAATTY	2 cut(s)	76, 895
XceI	RCATGY	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	1036
XspI	CTAG	3 cut(s)	600, 612, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.