Prupe.1G347300_v2.0.a1

Peptidoglycan-binding LysM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0008434
Physical Location & Seq
Forward (+)
32465013 .. 32468773
3761 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G347300.3

Sequence Viewer

Length: 1221 bp
ATGGAAAGCCACTTCTGTTGTCATCATGCAGATCAAGTGATTTCATCATCCCATTTACATAACCGATATCAAAATAACATTAAAAACGATTCAATGTCGTCGTCTTCTTCCTCGTCACTCTTTCTGCCGAGTTCTTCGCCGCCGCCATCACTGCTGCAGCAATCTTATTCTCCGTCTTCTTCGTCTCCCGCTTTGGTCGGTGGAGGTGGAGGTGGAGAAGCAGGTGCAGGTTATATAGAACACGTCGTTTCCAAATTTGACACGCTTGCTGGTGTCGCCATCAAATACGGCGTTGAGGTGGCCGACATCAAAAAGATGAATGGCCTTGTTACAGATCGTCAAATGTTTGCCCTCAGGTTTCTTCAGATTCCACTACCTGGGAGGCATCGTCCATCCCCTTTATCAAATGGTTCCAACACACCATGCCAGACTAGCTCTGACCAGACCCCACCCCGCCACACACAAGGTGATATGTTTGAATCATTCCGGTCCCTTAGAGTTACTCCTCAGCGGAAAGCCTCCCCGGCTATGGACTCTTTACAAAGTTATTACGGGCTGAAACCAAGAAATCAGAACTCCATAACTGAGGGTTTTGAAATGGCAGTCTACAAAAATGGAGGTGGCCATTATTTAGAAAATGGACACTTCCTTAGAGGCTCGCCAGCTTCTGACAAACCTTTTGGCCAACGTCGAAAGTCAAGAAGCTTAGTTAAGCTGGATGAGAATGGTGAACTTTCGGATTCCATGCCTGGTACGGAAACTAGAGAGGTTGACTCTGATCAATTTGGTGAAAAACTAATTAGGAGGCGTCAGAAATCAGAAGCTGACTTTTCTCGCACTCCTGAGATGCTGTTGGGAGATAACAGTGGCAGTGGCAGTGGCACTGCCGGGTTTTCAGCATTTACAGGGCAGTGCTTGGCCCTTAGACCCAAAGCAGCTAATCGAACGGCTTTAGGAACTGATGTTGAAGCTGGTGGCTTGAATCCTATACCAGTGGGTTTGGGTGATTCTTTTATAACAGACGGGTTGTCTGGAGTGAGGAAGTCGTCAAGCACATCAAATTTGCAGGATCACGACAGTAGCAGTTCTGCATCCATCTGGTCAACTTCCAAGTGGAGTTTGAAGCCAGATTTACAAGTATTTTCAACTGCGGCCATTAGAAAACCAATATTTGATGGTTTGCCTAAGCCAACAGGTCGAAGAAAGGCTGCACTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

407

Amino Acids

43.62

Weight (kDa)

9.06

Isoelectric Point (pI)

57.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1016
AarI CACCTGC 1 cut(s) 212
Acc36I ACCTGC 2 cut(s) 212, 218
AccB7I CCANNNNNTGG 1 cut(s) 377
AccI GTMKAC 1 cut(s) 606
AciI CCGC 6 cut(s) 140, 143, 189, 454, 511, 1151
AclWI GGATC 1 cut(s) 1077
AcoI YGGCCR 4 cut(s) 300, 622, 682, 1152
AcsI RAATTY 2 cut(s) 254, 1060
AcuI CTGAAG 1 cut(s) 347
AcyI GRCGYC 1 cut(s) 808
AdeI CACNNNGTG 1 cut(s) 467
AfaI GTAC 1 cut(s) 754
AfiI CCNNNNNNNGG 2 cut(s) 377, 529
AflIII ACRYGT 1 cut(s) 241
AgsI TTSAA 7 cut(s) 93, 479, 596, 968, 982, 1123, 1146
AhdI GACNNNNNGTC 1 cut(s) 1027
AjiI CACGTC 1 cut(s) 244
AjnI CCWGG 2 cut(s) 376, 748
AluBI AGCT 7 cut(s) 435, 665, 705, 715, 824, 938, 971
AluI AGCT 7 cut(s) 435, 665, 705, 715, 824, 938, 971
Alw26I GTCTC 1 cut(s) 189
AlwI GGATC 1 cut(s) 1077
AlwNI CAGNNNCTG 2 cut(s) 668, 824
AoxI GGCC 6 cut(s) 300, 322, 622, 682, 918, 1152
ApeKI GCWGC 4 cut(s) 154, 157, 935, 1208
ApoI RAATTY 2 cut(s) 254, 1060
ArsI GACNNNNNNTTYG 2 cut(s) 662, 694
AspS9I GGNCC 2 cut(s) 489, 919
AsuC2I CCSGG 2 cut(s) 524, 889
AsuHPI GGTGA 4 cut(s) 479, 740, 800, 1016
AvaII GGWCC 1 cut(s) 489
AxyI CCTNAGG 1 cut(s) 353
BalI TGGCCA 2 cut(s) 624, 684
BbsI GAAGAC 2 cut(s) 96, 168
BbvCI CCTCAGC 1 cut(s) 507
BbvI GCAGC 4 cut(s) 141, 169, 947, 1195
BccI CCATC 5 cut(s) 154, 287, 400, 1103, 1169
BceAI ACGGC 2 cut(s) 304, 963
BciT130I CCWGG 2 cut(s) 378, 750
BclI TGATCA 1 cut(s) 778
BcnI CCSGG 2 cut(s) 524, 889
BcoDI GTCTC 1 cut(s) 189
BfaI CTAG 2 cut(s) 432, 762
BfmI CTRYAG 1 cut(s) 155
BfuAI ACCTGC 2 cut(s) 212, 218
BglI GCCNNNNNGGC 1 cut(s) 524
BisI GCNGC 7 cut(s) 140, 143, 155, 158, 936, 1152, 1209
BlsI GCNGC 7 cut(s) 141, 144, 156, 159, 937, 1153, 1210
Bme1390I CCNGG 4 cut(s) 378, 524, 750, 889
Bme18I GGWCC 1 cut(s) 489
BmeRI GACNNNNNGTC 1 cut(s) 1027
BmgBI CACGTC 1 cut(s) 244
BmgT120I GGNCC 2 cut(s) 489, 919
BmiI GGNNCC 2 cut(s) 412, 491
BmrFI CCNGG 4 cut(s) 378, 524, 750, 889
BmsI GCATC 3 cut(s) 394, 837, 1100
BpiI GAAGAC 2 cut(s) 96, 168
BplI GAGNNNNNCTC 2 cut(s) 758, 790
BpmI CTGGAG 1 cut(s) 1053
Bpu10I CCTNAGC 2 cut(s) 507, 1185
BpuMI CCSGG 2 cut(s) 524, 889
BsaHI GRCGYC 1 cut(s) 808
BsaJI CCNNGG 2 cut(s) 377, 522
BsaWI WCCGGW 1 cut(s) 486
BsaXI ACNNNNNCTCC 2 cut(s) 373, 403
Bsc4I CCNNNNNNNGG 2 cut(s) 377, 529
Bse1I ACTGG 1 cut(s) 992
Bse21I CCTNAGG 1 cut(s) 353
BseBI CCWGG 2 cut(s) 378, 750
BseDI CCNNGG 2 cut(s) 377, 522
BseGI GGATG 4 cut(s) 47, 392, 724, 1091
BseLI CCNNNNNNNGG 2 cut(s) 377, 529
BseMII CTCAG 4 cut(s) 367, 521, 576, 834
BseNI ACTGG 1 cut(s) 992
BseRI GAGGAG 1 cut(s) 495
BseXI GCAGC 4 cut(s) 141, 169, 947, 1195
BsgI GTGCAG 2 cut(s) 246, 1194
BshFI GGCC 6 cut(s) 302, 324, 624, 684, 920, 1154
BsiSI CCGG 3 cut(s) 487, 524, 888
BslFI GGGAC 1 cut(s) 475
BslI CCNNNNNNNGG 2 cut(s) 377, 529
BsmAI GTCTC 1 cut(s) 189
BsmBI CGTCTC 1 cut(s) 189
BsmFI GGGAC 1 cut(s) 475
BsnI GGCC 6 cut(s) 302, 324, 624, 684, 920, 1154
Bsp143I GATC 4 cut(s) 31, 334, 778, 1069
BspACI CCGC 6 cut(s) 140, 143, 189, 454, 511, 1151
BspANI GGCC 6 cut(s) 302, 324, 624, 684, 920, 1154
BspCNI CTCAG 4 cut(s) 366, 520, 577, 835
BspLI GGNNCC 2 cut(s) 412, 491
BspMAI CTGCAG 1 cut(s) 159
BspMI ACCTGC 2 cut(s) 212, 218
BspPI GGATC 1 cut(s) 1077
BsrI ACTGG 1 cut(s) 992
BssECI CCNNGG 2 cut(s) 377, 522
BssMI GATC 4 cut(s) 31, 334, 778, 1069
BssNI GRCGYC 1 cut(s) 808
Bst2UI CCWGG 2 cut(s) 378, 750
Bst4CI ACNGT 2 cut(s) 866, 1079
BstACI GRCGYC 1 cut(s) 808
BstC8I GCNNGC 3 cut(s) 267, 659, 663
BstDEI CTNAG 9 cut(s) 353, 494, 507, 585, 650, 706, 843, 923, 1185
BstF5I GGATG 4 cut(s) 47, 392, 724, 1091
BstKTI GATC 4 cut(s) 34, 337, 781, 1072
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 4 cut(s) 31, 334, 778, 1069
BstMWI GCNNNNNNNGC 4 cut(s) 151, 275, 432, 524
BstNI CCWGG 2 cut(s) 378, 750
BstSCI CCNGG 4 cut(s) 376, 522, 748, 887
BstSFI CTRYAG 1 cut(s) 155
BstV1I GCAGC 4 cut(s) 141, 169, 947, 1195
BstV2I GAAGAC 2 cut(s) 96, 168
Bsu36I CCTNAGG 1 cut(s) 353
BsuRI GGCC 6 cut(s) 302, 324, 624, 684, 920, 1154
BtrI CACGTC 1 cut(s) 244
BtsCI GGATG 4 cut(s) 47, 392, 724, 1091
BtsI GCAGTG 5 cut(s) 149, 877, 882, 883, 917
BtsIMutI CAGTG 7 cut(s) 149, 871, 877, 882, 883, 917, 999
BveI ACCTGC 2 cut(s) 212, 218
Cac8I GCNNGC 3 cut(s) 267, 659, 663
CaiI CAGNNNCTG 2 cut(s) 668, 824
Cfr13I GGNCC 2 cut(s) 489, 919
CseI GACGC 1 cut(s) 797
Csp6I GTAC 1 cut(s) 753
CspCI CAANNNNNGTGG 1 cut(s) 34
CviAII CATG 3 cut(s) 26, 423, 745
CviQI GTAC 1 cut(s) 753
DdeI CTNAG 9 cut(s) 353, 494, 507, 585, 650, 706, 843, 923, 1185
DpnI GATC 4 cut(s) 33, 336, 780, 1071
DpnII GATC 4 cut(s) 31, 334, 778, 1069
DraIII CACNNNGTG 1 cut(s) 467
DriI GACNNNNNGTC 1 cut(s) 1027
EaeI YGGCCR 4 cut(s) 300, 622, 682, 1152
Eam1105I GACNNNNNGTC 1 cut(s) 1027
Eco32I GATATC 1 cut(s) 68
Eco47I GGWCC 1 cut(s) 489
Eco57I CTGAAG 1 cut(s) 347
Eco81I CCTNAGG 1 cut(s) 353
EcoRII CCWGG 2 cut(s) 376, 748
EcoRV GATATC 1 cut(s) 68
Esp3I CGTCTC 1 cut(s) 189
FaeI CATG 3 cut(s) 29, 426, 748
FaqI GGGAC 1 cut(s) 475
FatI CATG 3 cut(s) 25, 422, 744
FauI CCCGC 2 cut(s) 196, 461
FbaI TGATCA 1 cut(s) 778
FblI GTMKAC 1 cut(s) 606
Fnu4HI GCNGC 7 cut(s) 140, 143, 155, 158, 936, 1152, 1209
FokI GGATG 4 cut(s) 34, 379, 731, 1078
Fsp4HI GCNGC 7 cut(s) 140, 143, 155, 158, 936, 1152, 1209
FspBI CTAG 2 cut(s) 432, 762
GluI GCNGC 7 cut(s) 140, 143, 155, 158, 936, 1152, 1209
GsuI CTGGAG 1 cut(s) 1053
HaeIII GGCC 6 cut(s) 302, 324, 624, 684, 920, 1154
HapII CCGG 3 cut(s) 487, 524, 888
HgaI GACGC 1 cut(s) 797
Hin1I GRCGYC 1 cut(s) 808
Hin1II CATG 3 cut(s) 29, 426, 748
HincII GTYRAC 2 cut(s) 772, 1104
HindII GTYRAC 2 cut(s) 772, 1104
HindIII AAGCTT 1 cut(s) 703
HinfI GANTC 8 cut(s) 89, 367, 479, 533, 740, 773, 982, 1007
HpaII CCGG 3 cut(s) 487, 524, 888
HphI GGTGA 4 cut(s) 479, 740, 800, 1016
Hpy166II GTNNAC 4 cut(s) 607, 731, 772, 1104
Hpy188I TCNGA 8 cut(s) 366, 439, 573, 670, 739, 778, 813, 820
Hpy188III TCNNGA 4 cut(s) 699, 842, 1032, 1073
Hpy8I GTNNAC 4 cut(s) 607, 731, 772, 1104
Hpy99I CGWCG 3 cut(s) 103, 248, 693
HpyCH4III ACNGT 2 cut(s) 866, 1079
HpyCH4IV ACGT 2 cut(s) 243, 688
HpyCH4V TGCA 6 cut(s) 29, 157, 227, 1066, 1091, 1211
HpyF10VI GCNNNNNNNGC 4 cut(s) 151, 275, 432, 524
HpyF3I CTNAG 9 cut(s) 353, 494, 507, 585, 650, 706, 843, 923, 1185
HpySE526I ACGT 2 cut(s) 243, 688
Hsp92I GRCGYC 1 cut(s) 808
Hsp92II CATG 3 cut(s) 29, 426, 748
Ksp22I TGATCA 1 cut(s) 778
Kzo9I GATC 4 cut(s) 31, 334, 778, 1069
Lsp1109I GCAGC 4 cut(s) 141, 169, 947, 1195
LweI GCATC 3 cut(s) 394, 837, 1100
MaeI CTAG 2 cut(s) 432, 762
MaeII ACGT 2 cut(s) 243, 688
MaeIII GTNAC 3 cut(s) 114, 328, 499
MalI GATC 4 cut(s) 33, 336, 780, 1071
MboI GATC 4 cut(s) 31, 334, 778, 1069
MboII GAAGA 7 cut(s) 96, 99, 126, 168, 171, 353, 1212
MlsI TGGCCA 2 cut(s) 624, 684
MluCI AATT 4 cut(s) 254, 782, 798, 1060
MluNI TGGCCA 2 cut(s) 624, 684
MlyI GAGTC 2 cut(s) 527, 767
MmeI TCCRAC 1 cut(s) 438
Mox20I TGGCCA 2 cut(s) 624, 684
MscI TGGCCA 2 cut(s) 624, 684
MseI TTAA 3 cut(s) 81, 711, 1219
Msp20I TGGCCA 2 cut(s) 624, 684
MspA1I CMGCKG 1 cut(s) 511
MspI CCGG 3 cut(s) 487, 524, 888
MspR9I CCNGG 4 cut(s) 378, 524, 750, 889
MvaI CCWGG 2 cut(s) 378, 750
MwoI GCNNNNNNNGC 4 cut(s) 151, 275, 432, 524
NciI CCSGG 2 cut(s) 524, 889
NdeII GATC 4 cut(s) 31, 334, 778, 1069
NlaIII CATG 3 cut(s) 29, 426, 748
NlaIV GGNNCC 2 cut(s) 412, 491
NmeAIII GCCGAG 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 114
PaqCI CACCTGC 1 cut(s) 212
PfeI GAWTC 6 cut(s) 89, 367, 479, 740, 982, 1007
PflMI CCANNNNNTGG 1 cut(s) 377
PkrI GCNGC 7 cut(s) 141, 144, 156, 159, 937, 1153, 1210
PleI GAGTC 2 cut(s) 527, 767
PpsI GAGTC 2 cut(s) 527, 767
PsiI TTATAA 1 cut(s) 1016
Psp6I CCWGG 2 cut(s) 376, 748
PspGI CCWGG 2 cut(s) 376, 748
PspN4I GGNNCC 2 cut(s) 412, 491
PspPI GGNCC 2 cut(s) 489, 919
PstI CTGCAG 1 cut(s) 159
PstNI CAGNNNCTG 2 cut(s) 668, 824
RsaI GTAC 1 cut(s) 754
RsaNI GTAC 1 cut(s) 753
SaqAI TTAA 3 cut(s) 81, 711, 1219
SatI GCNGC 7 cut(s) 140, 143, 155, 158, 936, 1152, 1209
Sau3AI GATC 4 cut(s) 31, 334, 778, 1069
Sau96I GGNCC 2 cut(s) 489, 919
SchI GAGTC 2 cut(s) 527, 767
ScrFI CCNGG 4 cut(s) 378, 524, 750, 889
SfaNI GCATC 3 cut(s) 394, 837, 1100
SfcI CTRYAG 1 cut(s) 155
SinI GGWCC 1 cut(s) 489
Sse9I AATT 4 cut(s) 254, 782, 798, 1060
SsiI CCGC 6 cut(s) 140, 143, 189, 454, 511, 1151
SspI AATATT 1 cut(s) 1170
SspMI CTAG 2 cut(s) 432, 762
StyD4I CCNGG 4 cut(s) 376, 522, 748, 887
TaaI ACNGT 2 cut(s) 866, 1079
TaiI ACGT 2 cut(s) 246, 691
TaqI TCGA 3 cut(s) 691, 943, 1198
TasI AATT 4 cut(s) 254, 782, 798, 1060
TauI GCSGC 3 cut(s) 142, 145, 1154
TfiI GAWTC 6 cut(s) 89, 367, 479, 740, 982, 1007
Tru1I TTAA 3 cut(s) 81, 711, 1219
Tru9I TTAA 3 cut(s) 81, 711, 1219
TscAI CASTG 7 cut(s) 156, 871, 877, 883, 889, 917, 999
TseFI GTSAC 1 cut(s) 114
TseI GCWGC 4 cut(s) 154, 157, 935, 1208
Tsp45I GTSAC 1 cut(s) 114
TspDTI ATGAA 2 cut(s) 33, 332
TspGWI ACGGA 2 cut(s) 162, 770
TspRI CASTG 7 cut(s) 156, 871, 877, 883, 889, 917, 999
Van91I CCANNNNNTGG 1 cut(s) 377
VpaK11BI GGWCC 1 cut(s) 489
XapI RAATTY 2 cut(s) 254, 1060
XmiI GTMKAC 1 cut(s) 606
XspI CTAG 2 cut(s) 432, 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.