Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0008434

Physical Location & Seq

Genomic Coordinates Reverse (-)

63933616 .. 63936202

Gene Structure 2587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G037230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGTCGTCTTCTTCTTCTTCTTATACAATGTGTCTTCCCAATTCCCATTTCCAATCTTCTTCGAATTCGCATTCTCCTCCTTCTTCTCCTCCTCCTCTCAATTTGAGTGCCGCCGGCGCCGGATACATAAAACATGCCGTCACCAAATACGACACGCTCGCCGGGGTCGCCATCAAATACGGCGTCGAGGTGGCAGATATCAGAAAGATGAATGGCCTGGTTACCGATCATCAAATGTTTGCCCTCAGATTTCTTCACATTCCACTACCTGGGAGGCATCCTCCATCCCCTTGTTTATCAAATGGTTCACCAGGGAGCCAGAGTAGTTCAGAGAGGTCCCCCAGAGTTACTCCTTGGAAAGCCTCCCAGGCAATGAACTCTTTACAAAGTTATTATGGGCTGAAAGCAAGAAATCAGAACTCTATCAAAAGGGAGATTCTTGAAATGGCTCTCTACAAAAAGGAAGGCTCCCATTATTTAGAAGATGGGTCCTTACGTGGAGCCTCATCTTTCAGCCTTTGTAGAAAGTCAAGAAGCTTAGTTAAGTTGGATGAGAATCATGAACTTTCTGATTCTGTGCCTAGTACAGAAACTAGGGAAGGCGACTCTGATCAGTTGGGAAAAAGGATTAGACGGCGCCAGAAATCTGAAGCTGACTTTTGTCGCACCCCTGAGATGCTGTTGGAAAATAACACTACCAGTGGCGGGTTTTCAGCCACAGCAATTACAGGGAAGTGCTTGGCCCTCAGACCAAAAGCAGCAGCCAATCGAACTGCTGATGTTGAAACTGGTGGGTTGAACCCTACTCCAGTAGGTCTTGGTGATTCTTTTATGGCATCAGATGGGTCTGGAGTAAGGAAGTCGTCAAGCACATCAAATTTGCAGGATCATGAATCTAGCTGTTCTGCATCAATCTGGTCAGCATCTAAATGGAGTTTGAAGCCAGATTTACAAGCGTTTTCAACTGCAGCCATTACAAAACCCATATTTGATGGCTTGCCTAAGCCTATGACTGGTCGACGAAACAAAGCCGCGCTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM

Protein Analysis

347

Amino Acids

37.34

Weight (kDa)

9.39

Isoelectric Point (pI)

59.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08200 AT5G23130
fragaria_vesca	FvH4_4g36950 FvH4_4g36950
malus_domestica	MD13G1005700.v1.1 MD16G1002200.v1.1
prunus_persica	Prupe.1G347300_v2.0.a1 Prupe.1G347300_v2.0.a1 Prupe.1G347300_v2.0.a1
pyrus_communis	pycom13g00470 pycom16g00350
rosa_chinensis	RchiOBHm_Chr4g0446721
rosa_laevigata	RLG00000005637
rosa_multiflora	Rmu_sc0001753.1_g000037
rosa_roxburghii	Rroxscaffold_5G00387060
rosa_rugosa	Rorug04G0374000 Rorug04G0374100 Rorug04G0374200
rosa_samantha	Rh4AG435600 Rh4BG444400 Rh4CG461700 Rh4DG443400
rosa_wichuraiana	Rw4G037230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	116, 636
AccB7I	CCANNNNNTGG	1 cut(s)	269
AccI	GTMKAC	1 cut(s)	1018
AccII	CGCG	1 cut(s)	1034
AciI	CCGC	3 cut(s)	111, 705, 1032
AclWI	GGATC	1 cut(s)	894
AcsI	RAATTY	2 cut(s)	64, 877
AcuI	CTGAAG	1 cut(s)	669
AcyI	GRCGYC	3 cut(s)	117, 183, 637
AfaI	GTAC	1 cut(s)	586
AfiI	CCNNNNNNNGG	3 cut(s)	269, 705, 1013
AgsI	TTSAA	5 cut(s)	443, 785, 799, 940, 963
AjnI	CCWGG	4 cut(s)	216, 268, 310, 366
AjuI	GAANNNNNNNTTGG	2 cut(s)	32, 64
AluBI	AGCT	3 cut(s)	537, 653, 900
AluI	AGCT	3 cut(s)	537, 653, 900
AlwI	GGATC	1 cut(s)	894
AoxI	GGCC	2 cut(s)	214, 741
ApeKI	GCWGC	3 cut(s)	758, 761, 968
ApoI	RAATTY	2 cut(s)	64, 877
ArsI	GACNNNNNNTTYG	2 cut(s)	168, 200
AspLEI	GCGC	3 cut(s)	119, 639, 1036
AspS9I	GGNCC	3 cut(s)	336, 489, 742
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	3 cut(s)	133, 300, 833
AsuII	TTCGAA	1 cut(s)	62
AvaII	GGWCC	2 cut(s)	336, 489
BanI	GGYRCC	2 cut(s)	116, 636
BbsI	GAAGAC	1 cut(s)	26
BbvI	GCAGC	3 cut(s)	770, 773, 980
BccI	CCATC	5 cut(s)	179, 292, 479, 836, 986
BceAI	ACGGC	3 cut(s)	122, 196, 650
BciT130I	CCWGG	4 cut(s)	218, 270, 312, 368
BciVI	GTATCC	1 cut(s)	116
BclI	TGATCA	1 cut(s)	610
BcnI	CCSGG	1 cut(s)	163
BfaI	CTAG	3 cut(s)	582, 594, 897
BfmI	CTRYAG	1 cut(s)	966
BfoI	RGCGCY	2 cut(s)	120, 640
BfuI	GTATCC	1 cut(s)	116
BglI	GCCNNNNNGGC	1 cut(s)	368
BisI	GCNGC	5 cut(s)	111, 759, 762, 969, 1032
BlsI	GCNGC	5 cut(s)	112, 760, 763, 970, 1033
Bme1390I	CCNGG	5 cut(s)	163, 218, 270, 312, 368
Bme18I	GGWCC	2 cut(s)	336, 489
BmgT120I	GGNCC	3 cut(s)	336, 489, 742
BmiI	GGNNCC	7 cut(s)	118, 317, 338, 469, 490, 502, 638
BmrFI	CCNGG	5 cut(s)	163, 218, 270, 312, 368
BmsI	GCATC	5 cut(s)	286, 666, 845, 917, 932
BoxI	GACNNNNGTC	1 cut(s)	660
BpiI	GAAGAC	1 cut(s)	26
BplI	GAGNNNNNCTC	2 cut(s)	265, 297
BpmI	CTGGAG	2 cut(s)	792, 870
Bpu10I	CCTNAGC	1 cut(s)	1002
Bpu14I	TTCGAA	1 cut(s)	62
BpuMI	CCSGG	1 cut(s)	163
BsaAI	YACGTR	1 cut(s)	497
BsaBI	GATNNNNATC	1 cut(s)	555
BsaHI	GRCGYC	3 cut(s)	117, 183, 637
BsaJI	CCNNGG	5 cut(s)	162, 269, 311, 353, 366
BsaXI	ACNNNNNCTCC	2 cut(s)	307, 337
Bsc4I	CCNNNNNNNGG	3 cut(s)	269, 705, 1013
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	4 cut(s)	699, 793, 809, 1018
Bse3DI	GCAATG	1 cut(s)	378
Bse8I	GATNNNNATC	1 cut(s)	555
BseBI	CCWGG	4 cut(s)	218, 270, 312, 368
BseDI	CCNNGG	5 cut(s)	162, 269, 311, 353, 366
BseGI	GGATG	3 cut(s)	277, 284, 556
BseJI	GATNNNNATC	1 cut(s)	555
BseLI	CCNNNNNNNGG	3 cut(s)	269, 705, 1013
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	3 cut(s)	259, 663, 760
BseNI	ACTGG	4 cut(s)	699, 793, 809, 1018
BseRI	GAGGAG	4 cut(s)	66, 78, 81, 84
BseXI	GCAGC	3 cut(s)	770, 773, 980
Bsh1236I	CGCG	1 cut(s)	1034
BshFI	GGCC	2 cut(s)	216, 743
BshNI	GGYRCC	2 cut(s)	116, 636
BsiSI	CCGG	3 cut(s)	114, 120, 162
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	3 cut(s)	269, 705, 1013
BsmFI	GGGAC	1 cut(s)	322
BsmI	GAATGC	1 cut(s)	70
BsnI	GGCC	2 cut(s)	216, 743
Bsp119I	TTCGAA	1 cut(s)	62
Bsp143I	GATC	3 cut(s)	226, 610, 886
BspACI	CCGC	3 cut(s)	111, 705, 1032
BspANI	GGCC	2 cut(s)	216, 743
BspCNI	CTCAG	3 cut(s)	258, 664, 759
BspFNI	CGCG	1 cut(s)	1034
BspHI	TCATGA	2 cut(s)	559, 889
BspLI	GGNNCC	7 cut(s)	118, 317, 338, 469, 490, 502, 638
BspMAI	CTGCAG	1 cut(s)	970
BspPI	GGATC	1 cut(s)	894
BspT104I	TTCGAA	1 cut(s)	62
BspT107I	GGYRCC	2 cut(s)	116, 636
BsrDI	GCAATG	1 cut(s)	378
BsrFI	RCCGGY	1 cut(s)	113
BsrI	ACTGG	4 cut(s)	699, 793, 809, 1018
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	5 cut(s)	162, 269, 311, 353, 366
BssMI	GATC	3 cut(s)	226, 610, 886
BssNI	GRCGYC	3 cut(s)	117, 183, 637
BssT1I	CCWWGG	1 cut(s)	353
Bst2UI	CCWGG	4 cut(s)	218, 270, 312, 368
BstACI	GRCGYC	3 cut(s)	117, 183, 637
BstBAI	YACGTR	1 cut(s)	497
BstBI	TTCGAA	1 cut(s)	62
BstC8I	GCNNGC	3 cut(s)	115, 159, 998
BstDEI	CTNAG	5 cut(s)	245, 538, 672, 746, 1002
BstEII	GGTNACC	1 cut(s)	220
BstF5I	GGATG	3 cut(s)	277, 284, 556
BstFNI	CGCG	1 cut(s)	1034
BstH2I	RGCGCY	2 cut(s)	120, 640
BstHHI	GCGC	3 cut(s)	119, 639, 1036
BstKTI	GATC	3 cut(s)	229, 613, 889
BstMBI	GATC	3 cut(s)	226, 610, 886
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 167, 368
BstNI	CCWGG	4 cut(s)	218, 270, 312, 368
BstNSI	RCATGY	1 cut(s)	137
BstPAI	GACNNNNGTC	1 cut(s)	660
BstPI	GGTNACC	1 cut(s)	220
BstSCI	CCNGG	5 cut(s)	161, 216, 268, 310, 366
BstSFI	CTRYAG	1 cut(s)	966
BstUI	CGCG	1 cut(s)	1034
BstV1I	GCAGC	3 cut(s)	770, 773, 980
BstV2I	GAAGAC	1 cut(s)	26
BsuI	GTATCC	1 cut(s)	116
BsuRI	GGCC	2 cut(s)	216, 743
BtsCI	GGATG	3 cut(s)	277, 284, 556
BtsIMutI	CAGTG	1 cut(s)	706
Cac8I	GCNNGC	3 cut(s)	115, 159, 998
CciI	TCATGA	2 cut(s)	559, 889
CfoI	GCGC	3 cut(s)	119, 639, 1036
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	3 cut(s)	336, 489, 742
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	585
CviAII	CATG	3 cut(s)	134, 560, 890
CviQI	GTAC	1 cut(s)	585
DdeI	CTNAG	5 cut(s)	245, 538, 672, 746, 1002
DinI	GGCGCC	2 cut(s)	118, 638
DpnI	GATC	3 cut(s)	228, 612, 888
DpnII	GATC	3 cut(s)	226, 610, 886
Eco130I	CCWWGG	1 cut(s)	353
Eco32I	GATATC	1 cut(s)	199
Eco47I	GGWCC	2 cut(s)	336, 489
Eco57I	CTGAAG	1 cut(s)	669
Eco91I	GGTNACC	1 cut(s)	220
EcoO109I	RGGNCCY	2 cut(s)	336, 489
EcoO65I	GGTNACC	1 cut(s)	220
EcoRI	GAATTC	1 cut(s)	64
EcoRII	CCWGG	4 cut(s)	216, 268, 310, 366
EcoRV	GATATC	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	353
EgeI	GGCGCC	2 cut(s)	118, 638
EheI	GGCGCC	2 cut(s)	118, 638
ErhI	CCWWGG	1 cut(s)	353
FaeI	CATG	3 cut(s)	137, 563, 893
FaiI	YATR	9 cut(s)	24, 128, 135, 396, 561, 833, 891, 986, 1010
FalI	AAGNNNNNCTT	1 cut(s)	1020
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	3 cut(s)	133, 559, 889
FauI	CCCGC	1 cut(s)	698
FbaI	TGATCA	1 cut(s)	610
FblI	GTMKAC	1 cut(s)	1018
Fnu4HI	GCNGC	5 cut(s)	111, 759, 762, 969, 1032
FokI	GGATG	3 cut(s)	264, 271, 563
Fsp4HI	GCNGC	5 cut(s)	111, 759, 762, 969, 1032
FspBI	CTAG	3 cut(s)	582, 594, 897
GlaI	GCGC	3 cut(s)	118, 638, 1035
GluI	GCNGC	5 cut(s)	111, 759, 762, 969, 1032
GsuI	CTGGAG	2 cut(s)	792, 870
HaeII	RGCGCY	2 cut(s)	120, 640
HaeIII	GGCC	2 cut(s)	216, 743
HapII	CCGG	3 cut(s)	114, 120, 162
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	3 cut(s)	119, 639, 1036
Hin1I	GRCGYC	3 cut(s)	117, 183, 637
Hin1II	CATG	3 cut(s)	137, 563, 893
Hin6I	GCGC	3 cut(s)	117, 637, 1034
HinP1I	GCGC	3 cut(s)	117, 637, 1034
HincII	GTYRAC	1 cut(s)	1019
HindII	GTYRAC	1 cut(s)	1019
HindIII	AAGCTT	1 cut(s)	535
HinfI	GANTC	6 cut(s)	436, 556, 572, 605, 824, 893
HpaII	CCGG	3 cut(s)	114, 120, 162
HphI	GGTGA	3 cut(s)	133, 300, 833
Hpy166II	GTNNAC	2 cut(s)	308, 1019
Hpy188I	TCNGA	9 cut(s)	203, 248, 331, 417, 571, 610, 649, 749, 841
Hpy188III	TCNNGA	5 cut(s)	440, 531, 560, 849, 890
Hpy8I	GTNNAC	2 cut(s)	308, 1019
Hpy99I	CGWCG	2 cut(s)	188, 1023
HpyAV	CCTTC	3 cut(s)	90, 458, 593
HpyCH4IV	ACGT	1 cut(s)	496
HpyCH4V	TGCA	3 cut(s)	883, 908, 968
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 167, 368
HpyF3I	CTNAG	5 cut(s)	245, 538, 672, 746, 1002
HpySE526I	ACGT	1 cut(s)	496
Hsp92I	GRCGYC	3 cut(s)	117, 183, 637
Hsp92II	CATG	3 cut(s)	137, 563, 893
HspAI	GCGC	3 cut(s)	117, 637, 1034
KasI	GGCGCC	2 cut(s)	116, 636
KroI	GCCGGC	1 cut(s)	113
KroNI	GCCGGC	1 cut(s)	115
Ksp22I	TGATCA	1 cut(s)	610
Kzo9I	GATC	3 cut(s)	226, 610, 886
LmnI	GCTCC	3 cut(s)	315, 473, 500
Lsp1109I	GCAGC	3 cut(s)	770, 773, 980
LweI	GCATC	5 cut(s)	286, 666, 845, 917, 932
MaeI	CTAG	3 cut(s)	582, 594, 897
MaeII	ACGT	1 cut(s)	496
MaeIII	GTNAC	3 cut(s)	139, 220, 346
MalI	GATC	3 cut(s)	228, 612, 888
MboI	GATC	3 cut(s)	226, 610, 886
MboII	GAAGA	9 cut(s)	3, 6, 9, 26, 48, 51, 75, 245, 494
MluCI	AATT	5 cut(s)	40, 64, 100, 723, 877
Mly113I	GGCGCC	2 cut(s)	117, 637
MlyI	GAGTC	1 cut(s)	599
MmeI	TCCRAC	2 cut(s)	528, 663
MreI	CGCCGGCG	1 cut(s)	113
MroNI	GCCGGC	1 cut(s)	113
MseI	TTAA	2 cut(s)	543, 1042
MslI	CAYNNNNRTG	1 cut(s)	928
MspI	CCGG	3 cut(s)	114, 120, 162
MspR9I	CCNGG	5 cut(s)	163, 218, 270, 312, 368
Mva1269I	GAATGC	1 cut(s)	70
MvaI	CCWGG	4 cut(s)	218, 270, 312, 368
MvnI	CGCG	1 cut(s)	1034
MwoI	GCNNNNNNNGC	3 cut(s)	116, 167, 368
NaeI	GCCGGC	1 cut(s)	115
NarI	GGCGCC	2 cut(s)	117, 637
NciI	CCSGG	1 cut(s)	163
NdeII	GATC	3 cut(s)	226, 610, 886
NgoMIV	GCCGGC	1 cut(s)	113
NlaIII	CATG	3 cut(s)	137, 563, 893
NlaIV	GGNNCC	7 cut(s)	118, 317, 338, 469, 490, 502, 638
NmuCI	GTSAC	1 cut(s)	139
NspI	RCATGY	1 cut(s)	137
NspV	TTCGAA	1 cut(s)	62
PagI	TCATGA	2 cut(s)	559, 889
PctI	GAATGC	1 cut(s)	70
PdiI	GCCGGC	1 cut(s)	115
PfeI	GAWTC	5 cut(s)	436, 556, 572, 824, 893
PflMI	CCANNNNNTGG	1 cut(s)	269
PkrI	GCNGC	5 cut(s)	112, 760, 763, 970, 1033
PleI	GAGTC	1 cut(s)	599
PluTI	GGCGCC	2 cut(s)	120, 640
PpsI	GAGTC	1 cut(s)	599
Ppu21I	YACGTR	1 cut(s)	497
PpuMI	RGGWCCY	2 cut(s)	336, 489
PshAI	GACNNNNGTC	1 cut(s)	660
Psp5II	RGGWCCY	2 cut(s)	336, 489
Psp6I	CCWGG	4 cut(s)	216, 268, 310, 366
PspEI	GGTNACC	1 cut(s)	220
PspGI	CCWGG	4 cut(s)	216, 268, 310, 366
PspN4I	GGNNCC	7 cut(s)	118, 317, 338, 469, 490, 502, 638
PspPI	GGNCC	3 cut(s)	336, 489, 742
PspPPI	RGGWCCY	2 cut(s)	336, 489
PstI	CTGCAG	1 cut(s)	970
RsaI	GTAC	1 cut(s)	586
RsaNI	GTAC	1 cut(s)	585
RseI	CAYNNNNRTG	1 cut(s)	928
SalI	GTCGAC	1 cut(s)	1017
SaqAI	TTAA	2 cut(s)	543, 1042
SatI	GCNGC	5 cut(s)	111, 759, 762, 969, 1032
Sau3AI	GATC	3 cut(s)	226, 610, 886
Sau96I	GGNCC	3 cut(s)	336, 489, 742
SchI	GAGTC	1 cut(s)	599
ScrFI	CCNGG	5 cut(s)	163, 218, 270, 312, 368
SetI	ASST	8 cut(s)	192, 271, 338, 499, 539, 655, 817, 902
SfaNI	GCATC	5 cut(s)	286, 666, 845, 917, 932
SfcI	CTRYAG	1 cut(s)	966
SfoI	GGCGCC	2 cut(s)	118, 638
SfuI	TTCGAA	1 cut(s)	62
SgrAI	CRCCGGYG	1 cut(s)	113
SinI	GGWCC	2 cut(s)	336, 489
SmiMI	CAYNNNNRTG	1 cut(s)	928
Sse9I	AATT	5 cut(s)	40, 64, 100, 723, 877
SsiI	CCGC	3 cut(s)	111, 705, 1032
SspDI	GGCGCC	2 cut(s)	116, 636
SspMI	CTAG	3 cut(s)	582, 594, 897
StyD4I	CCNGG	5 cut(s)	161, 216, 268, 310, 366
StyI	CCWWGG	1 cut(s)	353
TaiI	ACGT	1 cut(s)	499
TaqI	TCGA	4 cut(s)	62, 186, 769, 1018
TasI	AATT	5 cut(s)	40, 64, 100, 723, 877
TatI	WGTACW	1 cut(s)	584
TauI	GCSGC	2 cut(s)	113, 1034
TfiI	GAWTC	5 cut(s)	436, 556, 572, 824, 893
Tru1I	TTAA	2 cut(s)	543, 1042
Tru9I	TTAA	2 cut(s)	543, 1042
TscAI	CASTG	1 cut(s)	706
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	3 cut(s)	758, 761, 968
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	4 cut(s)	224, 389, 576, 906
TspRI	CASTG	1 cut(s)	706
Van91I	CCANNNNNTGG	1 cut(s)	269
VpaK11BI	GGWCC	2 cut(s)	336, 489
XapI	RAATTY	2 cut(s)	64, 877
XceI	RCATGY	1 cut(s)	137
XmiI	GTMKAC	1 cut(s)	1018
XspI	CTAG	3 cut(s)	582, 594, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.