Rorug04G0374100

Peptidoglycan-binding LysM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0008434
Physical Location & Seq
Forward (+)
54499170 .. 54500255
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0374100.1

Sequence Viewer

Length: 1086 bp
ATGTCGATGGCGGCGGGTTCTGCAATTGGATTTGAAGGATACGAAAAGAGGCTGGAAATTGCATTTTTTGAACCGAGTATCTTTCGTGATCCCCAAGGAAGGGGTCTTCGATCCCTGTCCAAATCCCAGCTGGACGAGTTTCTTGGACAAGCTGAGTGCACTATTGTCTCATCACTGTCCAACGATGAAGTCGACTCATATGTTCTGTCGGAGTCGAGCCTCTTTGTTTACTCCTACAAGATCATCATCAAAACTTGTGGGACGACTAAGTTGCTCCTAGCAATCCCACCTATCCTGAAGTTAGCTGAAGGCATTGATCTCACCGTGAGATCTGTGAGGTATACTCGTGGGAGCTTCATTTTCCCAGGAGCACAATCATTCCCTCACCGAAACTTCTCCGAAGAAGTTTCTACTCTTGACGCATACTTTGGGAAGCTCGGGGGAGGCAGCAGAGCTTATATGATGGGCGGTGGGTCTGACGGACCTCAGAAATGGCATGTGTATTCTGCTTCAGCTGAACCTGTTAGCTTGGTTGATCCTGTATACACCCTAGAAATGTGCATGACTGGTCTGGACAAGCAAAAGGCTTCTGTTTTCTACAAATCTGAGTCAAGCTCAGCAGCTGGAATGACCAATGATTCTGGAATCCGAAGGATCCTACCAGATTCTGATATTTGTGATTTCGAGTTTGACCCCTGTGGTTATTCGATGAATGCCATTGAAGGAGCGGCAATTTCAACCATTCATGTTACACCAGAAGATGGTTTTAGCTATGCTAGTTTTGAATCCGCAGGATATGACTTCAATGAGTTGAATCTTAACCAGTTGACTGAGAGGGTTTTGGCTTGTTTCAAACCGAGTGAGTTCTCCATTGCTGTGCATGCTGATGTTGCAGTCAAGTCACTCCAGCAAATTTGTTCATTGGATTTGAAGGGATACTGTCGCGAAGAGAGCAGCCACGAGGAGCTTGGAATGGGTGGTTCCATTGTTCATTACAGGTTCCTCAAGACTGAGGCCTGTGGTTCTCCAAGATCAACTCTTAAAGGCTGCTGGAAAGAGGAAGATGAGGACTACGAATCCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

361

Amino Acids

39.59

Weight (kDa)

4.8

Isoelectric Point (pI)

51.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAM_decarbox PF01536 10 - 334 6.3e-113 Adenosylmethionine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 761
AccBSI CCGCTC 1 cut(s) 728
AccI GTMKAC 3 cut(s) 192, 341, 543
AccII CGCG 1 cut(s) 945
AciI CCGC 5 cut(s) 11, 14, 468, 728, 789
AclWI GGATC 5 cut(s) 83, 105, 530, 649, 662
AcsI RAATTY 1 cut(s) 912
AcuI CTGAAG 3 cut(s) 317, 327, 495
AfiI CCNNNNNNNGG 3 cut(s) 99, 100, 761
AgsI TTSAA 9 cut(s) 35, 71, 722, 738, 785, 805, 814, 853, 931
AjnI CCWGG 1 cut(s) 364
Alw21I GWGCWC 2 cut(s) 161, 373
Alw26I GTCTC 1 cut(s) 172
Alw44I GTGCAC 1 cut(s) 157
AlwI GGATC 5 cut(s) 83, 105, 530, 649, 662
AlwNI CAGNNNCTG 2 cut(s) 623, 668
Ama87I CYCGRG 1 cut(s) 437
AoxI GGCC 1 cut(s) 1014
ApaLI GTGCAC 1 cut(s) 157
ApeKI GCWGC 4 cut(s) 447, 620, 954, 1047
ApoI RAATTY 1 cut(s) 912
ArsI GACNNNNNNTTYG 2 cut(s) 410, 442
AspS9I GGNCC 1 cut(s) 482
AsuHPI GGTGA 2 cut(s) 313, 377
AvaI CYCGRG 1 cut(s) 437
AvaII GGWCC 1 cut(s) 482
BaeGI GKGCMC 1 cut(s) 161
BamHI GGATCC 1 cut(s) 654
BauI CACGAG 2 cut(s) 345, 959
BbsI GAAGAC 1 cut(s) 98
Bbv12I GWGCWC 2 cut(s) 161, 373
BbvI GCAGC 4 cut(s) 459, 632, 966, 1034
BccI CCATC 2 cut(s) 457, 755
BcgI CGANNNNNNTGC 2 cut(s) 253, 287
BciT130I CCWGG 1 cut(s) 366
BciVI GTATCC 2 cut(s) 32, 929
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 3 cut(s) 278, 551, 777
BfuI GTATCC 2 cut(s) 32, 929
BglII AGATCT 1 cut(s) 329
BisI GCNGC 6 cut(s) 12, 448, 621, 729, 955, 1048
BlpI GCTNAGC 1 cut(s) 616
BlsI GCNGC 6 cut(s) 13, 449, 622, 730, 956, 1049
Bme1390I CCNGG 1 cut(s) 366
Bme18I GGWCC 1 cut(s) 482
BmeT110I CYCGRG 1 cut(s) 437
BmgT120I GGNCC 1 cut(s) 482
BmiI GGNNCC 3 cut(s) 656, 982, 1001
BmrFI CCNGG 1 cut(s) 366
BpiI GAAGAC 1 cut(s) 98
BplI GAGNNNNNCTC 4 cut(s) 328, 360, 599, 631
BpmI CTGGAG 1 cut(s) 890
Bpu1102I GCTNAGC 1 cut(s) 616
BpuEI CTTGAG 1 cut(s) 989
BsaBI GATNNNNATC 1 cut(s) 245
BsaJI CCNNGG 2 cut(s) 94, 364
Bsc4I CCNNNNNNNGG 3 cut(s) 99, 100, 761
Bse1I ACTGG 2 cut(s) 571, 823
Bse3DI GCAATG 1 cut(s) 870
Bse8I GATNNNNATC 1 cut(s) 245
BseBI CCWGG 1 cut(s) 366
BseDI CCNNGG 2 cut(s) 94, 364
BseJI GATNNNNATC 1 cut(s) 245
BseLI CCNNNNNNNGG 3 cut(s) 99, 100, 761
BseMI GCAATG 1 cut(s) 870
BseMII CTCAG 6 cut(s) 144, 500, 597, 630, 822, 1002
BseNI ACTGG 2 cut(s) 571, 823
BseRI GAGGAG 1 cut(s) 977
BseSI GKGCMC 1 cut(s) 161
BseXI GCAGC 4 cut(s) 459, 632, 966, 1034
BseYI CCCAGC 1 cut(s) 126
Bsh1236I CGCG 1 cut(s) 945
BshFI GGCC 1 cut(s) 1016
BsiHKAI GWGCWC 2 cut(s) 161, 373
BsiHKCI CYCGRG 1 cut(s) 437
BslFI GGGAC 1 cut(s) 274
BslI CCNNNNNNNGG 3 cut(s) 99, 100, 761
BsmAI GTCTC 1 cut(s) 172
BsmFI GGGAC 1 cut(s) 274
BsmI GAATGC 1 cut(s) 718
BsnI GGCC 1 cut(s) 1016
BsoBI CYCGRG 1 cut(s) 437
Bsp1286I GDGCHC 2 cut(s) 161, 373
Bsp143I GATC 8 cut(s) 88, 110, 240, 316, 329, 535, 654, 1031
Bsp1720I GCTNAGC 1 cut(s) 616
Bsp68I TCGCGA 1 cut(s) 945
BspACI CCGC 5 cut(s) 11, 14, 468, 728, 789
BspANI GGCC 1 cut(s) 1016
BspCNI CTCAG 6 cut(s) 145, 499, 598, 629, 823, 1003
BspFNI CGCG 1 cut(s) 945
BspLI GGNNCC 3 cut(s) 656, 982, 1001
BspPI GGATC 5 cut(s) 83, 105, 530, 649, 662
BsrBI CCGCTC 1 cut(s) 728
BsrDI GCAATG 1 cut(s) 870
BsrI ACTGG 2 cut(s) 571, 823
BssECI CCNNGG 2 cut(s) 94, 364
BssMI GATC 8 cut(s) 88, 110, 240, 316, 329, 535, 654, 1031
BssNAI GTATAC 2 cut(s) 342, 544
BssSI CACGAG 2 cut(s) 345, 959
BssT1I CCWWGG 1 cut(s) 94
Bst1107I GTATAC 2 cut(s) 342, 544
Bst2BI CACGAG 2 cut(s) 345, 959
Bst2UI CCWGG 1 cut(s) 366
Bst4CI ACNGT 3 cut(s) 177, 325, 941
Bst6I CTCTTC 1 cut(s) 942
BstC8I GCNNGC 1 cut(s) 882
BstDEI CTNAG 7 cut(s) 153, 267, 486, 606, 616, 831, 1011
BstFNI CGCG 1 cut(s) 945
BstKTI GATC 8 cut(s) 91, 113, 243, 319, 332, 538, 657, 1034
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 8 cut(s) 88, 110, 240, 316, 329, 535, 654, 1031
BstMWI GCNNNNNNNGC 4 cut(s) 20, 881, 890, 951
BstNI CCWGG 1 cut(s) 366
BstNSI RCATGY 2 cut(s) 500, 884
BstSCI CCNGG 1 cut(s) 364
BstSLI GKGCMC 1 cut(s) 161
BstUI CGCG 1 cut(s) 945
BstV1I GCAGC 4 cut(s) 459, 632, 966, 1034
BstV2I GAAGAC 1 cut(s) 98
BstX2I RGATCY 2 cut(s) 329, 654
BstYI RGATCY 2 cut(s) 329, 654
BstZ17I GTATAC 2 cut(s) 342, 544
BsuI GTATCC 2 cut(s) 32, 929
BsuRI GGCC 1 cut(s) 1016
BtsIMutI CAGTG 1 cut(s) 173
BtuMI TCGCGA 1 cut(s) 945
Cac8I GCNNGC 1 cut(s) 882
CaiI CAGNNNCTG 2 cut(s) 623, 668
Cfr13I GGNCC 1 cut(s) 482
CseI GACGC 1 cut(s) 428
CspCI CAANNNNNGTGG 2 cut(s) 238, 273
CviAII CATG 4 cut(s) 497, 562, 746, 881
DdeI CTNAG 7 cut(s) 153, 267, 486, 606, 616, 831, 1011
DpnI GATC 8 cut(s) 90, 112, 242, 318, 331, 537, 656, 1033
DpnII GATC 8 cut(s) 88, 110, 240, 316, 329, 535, 654, 1031
Eam1104I CTCTTC 1 cut(s) 942
EarI CTCTTC 1 cut(s) 942
Eco130I CCWWGG 1 cut(s) 94
Eco147I AGGCCT 1 cut(s) 1016
Eco47I GGWCC 1 cut(s) 482
Eco57I CTGAAG 3 cut(s) 317, 327, 495
Eco88I CYCGRG 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 4 cut(s) 500, 565, 749, 884
FaqI GGGAC 1 cut(s) 274
FatI CATG 4 cut(s) 496, 561, 745, 880
FauI CCCGC 1 cut(s) 7
FauNDI CATATG 1 cut(s) 199
FblI GTMKAC 3 cut(s) 192, 341, 543
Fnu4HI GCNGC 6 cut(s) 12, 448, 621, 729, 955, 1048
Fsp4HI GCNGC 6 cut(s) 12, 448, 621, 729, 955, 1048
FspBI CTAG 3 cut(s) 278, 551, 777
GluI GCNGC 6 cut(s) 12, 448, 621, 729, 955, 1048
GsaI CCCAGC 1 cut(s) 130
GsuI CTGGAG 1 cut(s) 890
HaeIII GGCC 1 cut(s) 1016
HgaI GACGC 1 cut(s) 428
Hin1II CATG 4 cut(s) 500, 565, 749, 884
HincII GTYRAC 2 cut(s) 193, 828
HindII GTYRAC 2 cut(s) 193, 828
HinfI GANTC 9 cut(s) 194, 212, 608, 638, 645, 665, 785, 814, 1076
HphI GGTGA 2 cut(s) 313, 377
Hpy166II GTNNAC 6 cut(s) 159, 193, 229, 342, 544, 828
Hpy188I TCNGA 7 cut(s) 211, 400, 478, 489, 607, 650, 670
Hpy188III TCNNGA 8 cut(s) 86, 295, 416, 572, 642, 944, 1006, 1083
Hpy8I GTNNAC 6 cut(s) 159, 193, 229, 342, 544, 828
HpyAV CCTTC 6 cut(s) 29, 93, 302, 645, 716, 925
HpyCH4III ACNGT 3 cut(s) 177, 325, 941
HpyCH4V TGCA 6 cut(s) 23, 62, 159, 561, 880, 893
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 881, 890, 951
HpyF3I CTNAG 7 cut(s) 153, 267, 486, 606, 616, 831, 1011
Hsp92II CATG 4 cut(s) 500, 565, 749, 884
Kzo9I GATC 8 cut(s) 88, 110, 240, 316, 329, 535, 654, 1031
LmnI GCTCC 5 cut(s) 279, 351, 368, 725, 964
Lsp1109I GCAGC 4 cut(s) 459, 632, 966, 1034
MaeI CTAG 3 cut(s) 278, 551, 777
MaeIII GTNAC 2 cut(s) 748, 900
MalI GATC 8 cut(s) 90, 112, 242, 318, 331, 537, 656, 1033
MbiI CCGCTC 1 cut(s) 728
MboI GATC 8 cut(s) 88, 110, 240, 316, 329, 535, 654, 1031
MboII GAAGA 5 cut(s) 98, 413, 770, 959, 1073
MfeI CAATTG 1 cut(s) 24
MflI RGATCY 2 cut(s) 329, 654
MhlI GDGCHC 2 cut(s) 161, 373
MluCI AATT 4 cut(s) 24, 57, 732, 912
MlyI GAGTC 3 cut(s) 188, 221, 617
MmeI TCCRAC 2 cut(s) 189, 204
MseI TTAA 2 cut(s) 819, 1041
MslI CAYNNNNRTG 2 cut(s) 875, 885
MspA1I CMGCKG 3 cut(s) 130, 515, 623
MspR9I CCNGG 1 cut(s) 366
MunI CAATTG 1 cut(s) 24
Mva1269I GAATGC 1 cut(s) 718
MvaI CCWGG 1 cut(s) 366
MvnI CGCG 1 cut(s) 945
MwoI GCNNNNNNNGC 4 cut(s) 20, 881, 890, 951
NdeI CATATG 1 cut(s) 199
NdeII GATC 8 cut(s) 88, 110, 240, 316, 329, 535, 654, 1031
NlaIII CATG 4 cut(s) 500, 565, 749, 884
NlaIV GGNNCC 3 cut(s) 656, 982, 1001
NmuCI GTSAC 1 cut(s) 900
NruI TCGCGA 1 cut(s) 945
NspI RCATGY 2 cut(s) 500, 884
PaeI GCATGC 1 cut(s) 884
PceI AGGCCT 1 cut(s) 1016
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PctI GAATGC 1 cut(s) 718
PfeI GAWTC 6 cut(s) 638, 645, 665, 785, 814, 1076
PflMI CCANNNNNTGG 1 cut(s) 761
PkrI GCNGC 6 cut(s) 13, 449, 622, 730, 956, 1049
PleI GAGTC 3 cut(s) 188, 220, 616
PpsI GAGTC 3 cut(s) 188, 220, 616
Psp6I CCWGG 1 cut(s) 364
PspFI CCCAGC 1 cut(s) 126
PspGI CCWGG 1 cut(s) 364
PspN4I GGNNCC 3 cut(s) 656, 982, 1001
PspPI GGNCC 1 cut(s) 482
PstNI CAGNNNCTG 2 cut(s) 623, 668
PsuI RGATCY 2 cut(s) 329, 654
PvuII CAGCTG 3 cut(s) 130, 515, 623
RruI TCGCGA 1 cut(s) 945
RseI CAYNNNNRTG 2 cut(s) 875, 885
SalI GTCGAC 1 cut(s) 191
SaqAI TTAA 2 cut(s) 819, 1041
SatI GCNGC 6 cut(s) 12, 448, 621, 729, 955, 1048
Sau3AI GATC 8 cut(s) 88, 110, 240, 316, 329, 535, 654, 1031
Sau96I GGNCC 1 cut(s) 482
SchI GAGTC 3 cut(s) 188, 221, 617
ScrFI CCNGG 1 cut(s) 366
SduI GDGCHC 2 cut(s) 161, 373
SinI GGWCC 1 cut(s) 482
SmiMI CAYNNNNRTG 2 cut(s) 875, 885
SmlI CTYRAG 1 cut(s) 1004
SmoI CTYRAG 1 cut(s) 1004
SphI GCATGC 1 cut(s) 884
Sse9I AATT 4 cut(s) 24, 57, 732, 912
SseBI AGGCCT 1 cut(s) 1016
SsiI CCGC 5 cut(s) 11, 14, 468, 728, 789
SspMI CTAG 3 cut(s) 278, 551, 777
StuI AGGCCT 1 cut(s) 1016
StyD4I CCNGG 1 cut(s) 364
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 3 cut(s) 177, 325, 941
TaqI TCGA 6 cut(s) 5, 109, 192, 215, 684, 707
TasI AATT 4 cut(s) 24, 57, 732, 912
TauI GCSGC 2 cut(s) 14, 731
TfiI GAWTC 6 cut(s) 638, 645, 665, 785, 814, 1076
Tru1I TTAA 2 cut(s) 819, 1041
Tru9I TTAA 2 cut(s) 819, 1041
TscAI CASTG 1 cut(s) 180
TseFI GTSAC 1 cut(s) 900
TseI GCWGC 4 cut(s) 447, 620, 954, 1047
Tsp45I GTSAC 1 cut(s) 900
TspDTI ATGAA 6 cut(s) 201, 346, 725, 734, 909, 980
TspGWI ACGGA 1 cut(s) 495
TspRI CASTG 1 cut(s) 180
Van91I CCANNNNNTGG 1 cut(s) 761
VneI GTGCAC 1 cut(s) 157
VpaK11BI GGWCC 1 cut(s) 482
XapI RAATTY 1 cut(s) 912
XceI RCATGY 2 cut(s) 500, 884
XcmI CCANNNNNNNNNTGG 2 cut(s) 127, 965
XmiI GTMKAC 3 cut(s) 192, 341, 543
XspI CTAG 3 cut(s) 278, 551, 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.