Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001753.1

Orthogroup ID

OG0008434

Physical Location & Seq

Genomic Coordinates Forward (+)

170206 .. 172126

Gene Structure 1921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001753.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

atgtcgtcttcttcttcttcttcttcttatactatgtgtcttcccaattcgcatttccaatcttcttcgaattcgcattctcctccttctcctcctcctctcaatttgactgccgccggcgccggatacatagaacatgccgtcaccaaatacgacacgctcgccggggtcgccatcaaatacggcgtcgaggtggcagatatcagaaagatgaatggcctggttaccgatcatcaaatgtttgccctcagatttcttcacattccactacctgggaggcatcctccatccccttgtttatcaaatggttcaccagggagccagagtagttcagagaggtcccccagagttactcctcggaaagcctcccaggcaatgacctctttacaaagttattatgggctgaaagcaagaaatcagaactctatcaaaagggagattcttgaaatggctctctacaaaaaggaaggctcccattatttagaagatgggtccttacgtggagcctcatctttcagcctttgtagaaagtcaagaagcttagttaagttggatgagaatcgtgaactttctgattctgtgcctagtacagaaactagggaaggcgactctgatcagttgggaaaaaggattagacggcgccagaaatctgaagctgacttttgtcgcacccctgagatgctgttggaaaataacactaccagtggcgggttttcagccacagcaattacagggaagtgcttggccctcagaccaaaagcagcagccaatcgaactgctgatgttgaaactggtgggttgaaccctactccagtaggtcttggtgattcttttatggcatcagatgggtctggagtaaggaagtcgtcaagcacatcaaatttgcaggatcatgaatctaactgttctgcatcaatctggtcagcatctaaatggagtttgaagccagatttacaagcgttttcaactgcagccattacaaaacccatatttgatggcttgcctaagcctatgactggtcgacgaaacaaagccgcgcttgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM

Protein Analysis

348

Amino Acids

37.45

Weight (kDa)

9.4

Isoelectric Point (pI)

59.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08200 AT5G23130
fragaria_vesca	FvH4_4g36950 FvH4_4g36950
malus_domestica	MD13G1005700.v1.1 MD16G1002200.v1.1
prunus_persica	Prupe.1G347300_v2.0.a1 Prupe.1G347300_v2.0.a1 Prupe.1G347300_v2.0.a1
pyrus_communis	pycom13g00470 pycom16g00350
rosa_chinensis	RchiOBHm_Chr4g0446721
rosa_laevigata	RLG00000005637
rosa_multiflora	Rmu_sc0001753.1_g000037
rosa_roxburghii	Rroxscaffold_5G00387060
rosa_rugosa	Rorug04G0374000 Rorug04G0374100 Rorug04G0374200
rosa_samantha	Rh4AG435600 Rh4BG444400 Rh4CG461700 Rh4DG443400
rosa_wichuraiana	Rw4G037230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	119, 639
AccB7I	CCANNNNNTGG	1 cut(s)	272
AccI	GTMKAC	1 cut(s)	1021
AccII	CGCG	1 cut(s)	1037
AciI	CCGC	3 cut(s)	114, 708, 1035
AclWI	GGATC	1 cut(s)	897
AcsI	RAATTY	2 cut(s)	70, 880
AcuI	CTGAAG	1 cut(s)	672
AcyI	GRCGYC	3 cut(s)	120, 186, 640
AfaI	GTAC	1 cut(s)	589
AfiI	CCNNNNNNNGG	3 cut(s)	272, 708, 1016
AgsI	TTSAA	5 cut(s)	446, 788, 802, 943, 966
AjnI	CCWGG	4 cut(s)	219, 271, 313, 369
AjuI	GAANNNNNNNTTGG	2 cut(s)	38, 70
AluBI	AGCT	2 cut(s)	540, 656
AluI	AGCT	2 cut(s)	540, 656
AlwI	GGATC	1 cut(s)	897
AoxI	GGCC	2 cut(s)	217, 744
ApeKI	GCWGC	3 cut(s)	761, 764, 971
ApoI	RAATTY	2 cut(s)	70, 880
ArsI	GACNNNNNNTTYG	2 cut(s)	171, 203
AspLEI	GCGC	3 cut(s)	122, 642, 1039
AspS9I	GGNCC	3 cut(s)	339, 492, 745
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	3 cut(s)	136, 303, 836
AsuII	TTCGAA	1 cut(s)	68
AvaII	GGWCC	2 cut(s)	339, 492
BanI	GGYRCC	2 cut(s)	119, 639
BbsI	GAAGAC	1 cut(s)	32
BbvI	GCAGC	3 cut(s)	773, 776, 983
BccI	CCATC	5 cut(s)	182, 295, 482, 839, 989
BceAI	ACGGC	3 cut(s)	125, 199, 653
BciT130I	CCWGG	4 cut(s)	221, 273, 315, 371
BciVI	GTATCC	1 cut(s)	119
BclI	TGATCA	1 cut(s)	613
BcnI	CCSGG	1 cut(s)	166
BfaI	CTAG	2 cut(s)	585, 597
BfmI	CTRYAG	1 cut(s)	969
BfoI	RGCGCY	2 cut(s)	123, 643
BfuI	GTATCC	1 cut(s)	119
BglI	GCCNNNNNGGC	1 cut(s)	371
BisI	GCNGC	5 cut(s)	114, 762, 765, 972, 1035
BlsI	GCNGC	5 cut(s)	115, 763, 766, 973, 1036
Bme1390I	CCNGG	5 cut(s)	166, 221, 273, 315, 371
Bme18I	GGWCC	2 cut(s)	339, 492
BmgT120I	GGNCC	3 cut(s)	339, 492, 745
BmiI	GGNNCC	7 cut(s)	121, 320, 341, 472, 493, 505, 641
BmrFI	CCNGG	5 cut(s)	166, 221, 273, 315, 371
BmsI	GCATC	5 cut(s)	289, 669, 848, 920, 935
BoxI	GACNNNNGTC	1 cut(s)	663
BpiI	GAAGAC	1 cut(s)	32
BplI	GAGNNNNNCTC	2 cut(s)	268, 300
BpmI	CTGGAG	2 cut(s)	795, 873
Bpu10I	CCTNAGC	1 cut(s)	1005
Bpu14I	TTCGAA	1 cut(s)	68
BpuMI	CCSGG	1 cut(s)	166
BsaAI	YACGTR	1 cut(s)	500
BsaBI	GATNNNNATC	1 cut(s)	558
BsaHI	GRCGYC	3 cut(s)	120, 186, 640
BsaJI	CCNNGG	5 cut(s)	165, 272, 314, 356, 369
BsaXI	ACNNNNNCTCC	2 cut(s)	310, 340
Bsc4I	CCNNNNNNNGG	3 cut(s)	272, 708, 1016
Bse118I	RCCGGY	1 cut(s)	116
Bse1I	ACTGG	4 cut(s)	702, 796, 812, 1021
Bse3DI	GCAATG	1 cut(s)	381
Bse8I	GATNNNNATC	1 cut(s)	558
BseBI	CCWGG	4 cut(s)	221, 273, 315, 371
BseDI	CCNNGG	5 cut(s)	165, 272, 314, 356, 369
BseGI	GGATG	3 cut(s)	280, 287, 559
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	3 cut(s)	272, 708, 1016
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	3 cut(s)	262, 666, 763
BseNI	ACTGG	4 cut(s)	702, 796, 812, 1021
BseRI	GAGGAG	5 cut(s)	72, 81, 84, 87, 345
BseXI	GCAGC	3 cut(s)	773, 776, 983
Bsh1236I	CGCG	1 cut(s)	1037
BshFI	GGCC	2 cut(s)	219, 746
BshNI	GGYRCC	2 cut(s)	119, 639
BsiSI	CCGG	3 cut(s)	117, 123, 165
BslFI	GGGAC	1 cut(s)	325
BslI	CCNNNNNNNGG	3 cut(s)	272, 708, 1016
BsmFI	GGGAC	1 cut(s)	325
BsmI	GAATGC	1 cut(s)	76
BsnI	GGCC	2 cut(s)	219, 746
Bsp119I	TTCGAA	1 cut(s)	68
Bsp143I	GATC	3 cut(s)	229, 613, 889
BspACI	CCGC	3 cut(s)	114, 708, 1035
BspANI	GGCC	2 cut(s)	219, 746
BspCNI	CTCAG	3 cut(s)	261, 667, 762
BspFNI	CGCG	1 cut(s)	1037
BspHI	TCATGA	1 cut(s)	892
BspLI	GGNNCC	7 cut(s)	121, 320, 341, 472, 493, 505, 641
BspMAI	CTGCAG	1 cut(s)	973
BspPI	GGATC	1 cut(s)	897
BspT104I	TTCGAA	1 cut(s)	68
BspT107I	GGYRCC	2 cut(s)	119, 639
BsrDI	GCAATG	1 cut(s)	381
BsrFI	RCCGGY	1 cut(s)	116
BsrI	ACTGG	4 cut(s)	702, 796, 812, 1021
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	5 cut(s)	165, 272, 314, 356, 369
BssMI	GATC	3 cut(s)	229, 613, 889
BssNI	GRCGYC	3 cut(s)	120, 186, 640
Bst2UI	CCWGG	4 cut(s)	221, 273, 315, 371
Bst4CI	ACNGT	1 cut(s)	905
BstACI	GRCGYC	3 cut(s)	120, 186, 640
BstBAI	YACGTR	1 cut(s)	500
BstBI	TTCGAA	1 cut(s)	68
BstC8I	GCNNGC	3 cut(s)	118, 162, 1001
BstDEI	CTNAG	5 cut(s)	248, 541, 675, 749, 1005
BstEII	GGTNACC	1 cut(s)	223
BstF5I	GGATG	3 cut(s)	280, 287, 559
BstFNI	CGCG	1 cut(s)	1037
BstH2I	RGCGCY	2 cut(s)	123, 643
BstHHI	GCGC	3 cut(s)	122, 642, 1039
BstKTI	GATC	3 cut(s)	232, 616, 892
BstMBI	GATC	3 cut(s)	229, 613, 889
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 170, 371
BstNI	CCWGG	4 cut(s)	221, 273, 315, 371
BstNSI	RCATGY	1 cut(s)	140
BstPAI	GACNNNNGTC	1 cut(s)	663
BstPI	GGTNACC	1 cut(s)	223
BstSCI	CCNGG	5 cut(s)	164, 219, 271, 313, 369
BstSFI	CTRYAG	1 cut(s)	969
BstUI	CGCG	1 cut(s)	1037
BstV1I	GCAGC	3 cut(s)	773, 776, 983
BstV2I	GAAGAC	1 cut(s)	32
BsuI	GTATCC	1 cut(s)	119
BsuRI	GGCC	2 cut(s)	219, 746
BtsCI	GGATG	3 cut(s)	280, 287, 559
BtsIMutI	CAGTG	1 cut(s)	709
Cac8I	GCNNGC	3 cut(s)	118, 162, 1001
CciI	TCATGA	1 cut(s)	892
CfoI	GCGC	3 cut(s)	122, 642, 1039
Cfr10I	RCCGGY	1 cut(s)	116
Cfr13I	GGNCC	3 cut(s)	339, 492, 745
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	588
CviAII	CATG	2 cut(s)	137, 893
CviQI	GTAC	1 cut(s)	588
DdeI	CTNAG	5 cut(s)	248, 541, 675, 749, 1005
DinI	GGCGCC	2 cut(s)	121, 641
DpnI	GATC	3 cut(s)	231, 615, 891
DpnII	GATC	3 cut(s)	229, 613, 889
Eco32I	GATATC	1 cut(s)	202
Eco47I	GGWCC	2 cut(s)	339, 492
Eco57I	CTGAAG	1 cut(s)	672
Eco91I	GGTNACC	1 cut(s)	223
EcoO109I	RGGNCCY	2 cut(s)	339, 492
EcoO65I	GGTNACC	1 cut(s)	223
EcoRI	GAATTC	1 cut(s)	70
EcoRII	CCWGG	4 cut(s)	219, 271, 313, 369
EcoRV	GATATC	1 cut(s)	202
EgeI	GGCGCC	2 cut(s)	121, 641
EheI	GGCGCC	2 cut(s)	121, 641
FaeI	CATG	2 cut(s)	140, 896
FaiI	YATR	9 cut(s)	30, 35, 131, 138, 399, 836, 894, 989, 1013
FalI	AAGNNNNNCTT	1 cut(s)	1023
FaqI	GGGAC	1 cut(s)	325
FatI	CATG	2 cut(s)	136, 892
FauI	CCCGC	1 cut(s)	701
FbaI	TGATCA	1 cut(s)	613
FblI	GTMKAC	1 cut(s)	1021
Fnu4HI	GCNGC	5 cut(s)	114, 762, 765, 972, 1035
FokI	GGATG	3 cut(s)	267, 274, 566
Fsp4HI	GCNGC	5 cut(s)	114, 762, 765, 972, 1035
FspBI	CTAG	2 cut(s)	585, 597
GlaI	GCGC	3 cut(s)	121, 641, 1038
GluI	GCNGC	5 cut(s)	114, 762, 765, 972, 1035
GsuI	CTGGAG	2 cut(s)	795, 873
HaeII	RGCGCY	2 cut(s)	123, 643
HaeIII	GGCC	2 cut(s)	219, 746
HapII	CCGG	3 cut(s)	117, 123, 165
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	3 cut(s)	122, 642, 1039
Hin1I	GRCGYC	3 cut(s)	120, 186, 640
Hin1II	CATG	2 cut(s)	140, 896
Hin6I	GCGC	3 cut(s)	120, 640, 1037
HinP1I	GCGC	3 cut(s)	120, 640, 1037
HincII	GTYRAC	1 cut(s)	1022
HindII	GTYRAC	1 cut(s)	1022
HindIII	AAGCTT	1 cut(s)	538
HinfI	GANTC	6 cut(s)	439, 559, 575, 608, 827, 896
HpaII	CCGG	3 cut(s)	117, 123, 165
HphI	GGTGA	3 cut(s)	136, 303, 836
Hpy166II	GTNNAC	3 cut(s)	311, 566, 1022
Hpy188III	TCNNGA	5 cut(s)	443, 534, 563, 852, 893
Hpy8I	GTNNAC	3 cut(s)	311, 566, 1022
Hpy99I	CGWCG	2 cut(s)	191, 1026
HpyAV	CCTTC	3 cut(s)	96, 461, 596
HpyCH4III	ACNGT	1 cut(s)	905
HpyCH4IV	ACGT	1 cut(s)	499
HpyCH4V	TGCA	3 cut(s)	886, 911, 971
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 170, 371
HpyF3I	CTNAG	5 cut(s)	248, 541, 675, 749, 1005
HpySE526I	ACGT	1 cut(s)	499
Hsp92I	GRCGYC	3 cut(s)	120, 186, 640
Hsp92II	CATG	2 cut(s)	140, 896
HspAI	GCGC	3 cut(s)	120, 640, 1037
KasI	GGCGCC	2 cut(s)	119, 639
KroI	GCCGGC	1 cut(s)	116
KroNI	GCCGGC	1 cut(s)	118
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	3 cut(s)	229, 613, 889
LmnI	GCTCC	3 cut(s)	318, 476, 503
Lsp1109I	GCAGC	3 cut(s)	773, 776, 983
LweI	GCATC	5 cut(s)	289, 669, 848, 920, 935
MaeI	CTAG	2 cut(s)	585, 597
MaeII	ACGT	1 cut(s)	499
MaeIII	GTNAC	3 cut(s)	142, 223, 349
MalI	GATC	3 cut(s)	231, 615, 891
MboI	GATC	3 cut(s)	229, 613, 889
MluCI	AATT	5 cut(s)	46, 70, 103, 726, 880
Mly113I	GGCGCC	2 cut(s)	120, 640
MlyI	GAGTC	1 cut(s)	602
MmeI	TCCRAC	2 cut(s)	531, 666
MreI	CGCCGGCG	1 cut(s)	116
MroNI	GCCGGC	1 cut(s)	116
MseI	TTAA	2 cut(s)	546, 1045
MslI	CAYNNNNRTG	1 cut(s)	931
MspI	CCGG	3 cut(s)	117, 123, 165
MspR9I	CCNGG	5 cut(s)	166, 221, 273, 315, 371
Mva1269I	GAATGC	1 cut(s)	76
MvaI	CCWGG	4 cut(s)	221, 273, 315, 371
MvnI	CGCG	1 cut(s)	1037
MwoI	GCNNNNNNNGC	3 cut(s)	119, 170, 371
NaeI	GCCGGC	1 cut(s)	118
NarI	GGCGCC	2 cut(s)	120, 640
NciI	CCSGG	1 cut(s)	166
NdeII	GATC	3 cut(s)	229, 613, 889
NgoMIV	GCCGGC	1 cut(s)	116
NlaIII	CATG	2 cut(s)	140, 896
NlaIV	GGNNCC	7 cut(s)	121, 320, 341, 472, 493, 505, 641
NmuCI	GTSAC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	140
NspV	TTCGAA	1 cut(s)	68
PagI	TCATGA	1 cut(s)	892
PctI	GAATGC	1 cut(s)	76
PdiI	GCCGGC	1 cut(s)	118
PfeI	GAWTC	5 cut(s)	439, 559, 575, 827, 896
PflMI	CCANNNNNTGG	1 cut(s)	272
PkrI	GCNGC	5 cut(s)	115, 763, 766, 973, 1036
PleI	GAGTC	1 cut(s)	602
PluTI	GGCGCC	2 cut(s)	123, 643
PpsI	GAGTC	1 cut(s)	602
Ppu21I	YACGTR	1 cut(s)	500
PpuMI	RGGWCCY	2 cut(s)	339, 492
PshAI	GACNNNNGTC	1 cut(s)	663
Psp5II	RGGWCCY	2 cut(s)	339, 492
Psp6I	CCWGG	4 cut(s)	219, 271, 313, 369
PspEI	GGTNACC	1 cut(s)	223
PspGI	CCWGG	4 cut(s)	219, 271, 313, 369
PspN4I	GGNNCC	7 cut(s)	121, 320, 341, 472, 493, 505, 641
PspPI	GGNCC	3 cut(s)	339, 492, 745
PspPPI	RGGWCCY	2 cut(s)	339, 492
PstI	CTGCAG	1 cut(s)	973
RsaI	GTAC	1 cut(s)	589
RsaNI	GTAC	1 cut(s)	588
RseI	CAYNNNNRTG	1 cut(s)	931
SalI	GTCGAC	1 cut(s)	1020
SaqAI	TTAA	2 cut(s)	546, 1045
SatI	GCNGC	5 cut(s)	114, 762, 765, 972, 1035
Sau3AI	GATC	3 cut(s)	229, 613, 889
Sau96I	GGNCC	3 cut(s)	339, 492, 745
SchI	GAGTC	1 cut(s)	602
ScrFI	CCNGG	5 cut(s)	166, 221, 273, 315, 371
SetI	ASST	8 cut(s)	195, 274, 341, 383, 502, 542, 658, 820
SfaNI	GCATC	5 cut(s)	289, 669, 848, 920, 935
SfcI	CTRYAG	1 cut(s)	969
SfoI	GGCGCC	2 cut(s)	121, 641
SfuI	TTCGAA	1 cut(s)	68
SgrAI	CRCCGGYG	1 cut(s)	116
SinI	GGWCC	2 cut(s)	339, 492
SmiMI	CAYNNNNRTG	1 cut(s)	931
Sse9I	AATT	5 cut(s)	46, 70, 103, 726, 880
SsiI	CCGC	3 cut(s)	114, 708, 1035
SspDI	GGCGCC	2 cut(s)	119, 639
SspMI	CTAG	2 cut(s)	585, 597
StyD4I	CCNGG	5 cut(s)	164, 219, 271, 313, 369
TaaI	ACNGT	1 cut(s)	905
TaiI	ACGT	1 cut(s)	502
TaqI	TCGA	4 cut(s)	68, 189, 772, 1021
TasI	AATT	5 cut(s)	46, 70, 103, 726, 880
TatI	WGTACW	1 cut(s)	587
TauI	GCSGC	2 cut(s)	116, 1037
TfiI	GAWTC	5 cut(s)	439, 559, 575, 827, 896
Tru1I	TTAA	2 cut(s)	546, 1045
Tru9I	TTAA	2 cut(s)	546, 1045
TscAI	CASTG	1 cut(s)	709
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	3 cut(s)	761, 764, 971
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	2 cut(s)	227, 909
TspRI	CASTG	1 cut(s)	709
Van91I	CCANNNNNTGG	1 cut(s)	272
VpaK11BI	GGWCC	2 cut(s)	339, 492
XapI	RAATTY	2 cut(s)	70, 880
XceI	RCATGY	1 cut(s)	140
XmiI	GTMKAC	1 cut(s)	1021
XspI	CTAG	2 cut(s)	585, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.