Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008434

Physical Location & Seq

Genomic Coordinates Forward (+)

143532 .. 146482

Gene Structure 2951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1002200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGGGGAGATGGAAAGCGAGTTTTGTTGTAGTCATGCAGATCAGGTGATTTCGTCCTCCTTGCATAACCGATACAATAACACCAACACCAATCCAATGTCGGCTTCTTCTTCTTCGTCTTCCCCTTTTCTCCCGGTTTCGTCGCCGCCACGATCTTCCTCTCCCGCTTTGGTCGGTGGCGGAGGAGTAGGGTACATAGAACATGTCGTTTCCAAATTCGACACGCTTGTTGGCGTCGCCATCAAATACGGCGTTGAGGTGGCCGACATCAAAAAGATTAACGGCCTTGTTACAGATCGCCAAATGTTTGGCCTCCGGGTTCTTCAGATTCCACTACCTGGGAGGCATCCTCCATCCCCTTGTTTATCAGACGGTTCCAAGACACCAGGCCACAGTAGTTCCAACCAGACCCCACCTCGCAGCATACAATGTGATCTGTTTAACTCTTTTGGGTCCCATAGAGTTACTTGTACGAAGAAACCCTCCTTGGCTATGAACTCATTACAAAGTTATTACGGGCTGAAACCAAGAAATCAGAACTCTATAACTGAAGGTTTTGAAATGGCAGTCTACAAAAATGGAGGTGCCCATTATTTAGAAGATGGGCCATTCCTTGGAGCCTCAACAGCTTCTGACCAACCTTTGAGCCAACCTCGAAAGTCAAGAAGCCTAGTTAAATTGGATGAGAATAGTGAACTTTCTGATTCCATGCCTGCTGACGGTGACTCTGATCCATTGCGAATTAGAAGGCGTCAGAAATCTGAAGCAGACTTTTCTCGCACCCCTGAGAAGCTTTTGGGAGATAACAGCGGCAATGCCGGGTTTTCAGCAATTACAGGAAAGTGCTTGGCCCTTAGACCCACAGCAGCTAATAGAACTGCTTTAGGAAATGATGTTGAAGCTGGTGGCTTGAATCCTATACCAGTAGGTCTGGGTGATTCGCTTATAGCAGATGAATTATCTGGAGTGAGGAAGTCGTCGAGCACATCAAATTTGCAGGATCACGAGAGTAGCGGTTCTGCATCCATCTGGTCAACATCTAAGTGGAGTTTGAAGCCAGATTTACAAGCCTTTTCAACTGCAGTCATTGCGAAACCAATATTTGATGGTTTGCCTAAGCCAATGACAGGTCGAAGAAAAACTGCACTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM

Protein Analysis

385

Amino Acids

40.86

Weight (kDa)

8.45

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08200 AT5G23130
fragaria_vesca	FvH4_4g36950 FvH4_4g36950
malus_domestica	MD13G1005700.v1.1 MD16G1002200.v1.1
prunus_persica	Prupe.1G347300_v2.0.a1 Prupe.1G347300_v2.0.a1 Prupe.1G347300_v2.0.a1
pyrus_communis	pycom13g00470 pycom16g00350
rosa_chinensis	RchiOBHm_Chr4g0446721
rosa_laevigata	RLG00000005637
rosa_multiflora	Rmu_sc0001753.1_g000037
rosa_roxburghii	Rroxscaffold_5G00387060
rosa_rugosa	Rorug04G0374000 Rorug04G0374100 Rorug04G0374200
rosa_samantha	Rh4AG435600 Rh4BG444400 Rh4CG461700 Rh4DG443400
rosa_wichuraiana	Rw4G037230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	584
AccB7I	CCANNNNNTGG	2 cut(s)	338, 614
AccI	GTMKAC	1 cut(s)	570
AciI	CCGC	5 cut(s)	146, 165, 180, 810, 1014
AclWI	GGATC	2 cut(s)	725, 1008
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	2 cut(s)	215, 991
AcuI	CTGAAG	3 cut(s)	308, 570, 783
AcyI	GRCGYC	2 cut(s)	234, 751
AfaI	GTAC	2 cut(s)	194, 472
AfiI	CCNNNNNNNGG	4 cut(s)	338, 614, 719, 1127
AflIII	ACRYGT	1 cut(s)	202
AgsI	TTSAA	5 cut(s)	560, 899, 913, 1054, 1077
AjnI	CCWGG	2 cut(s)	337, 385
AjuI	GAANNNNNNNTTGG	4 cut(s)	88, 120, 470, 502
AluBI	AGCT	4 cut(s)	629, 793, 869, 902
AluI	AGCT	4 cut(s)	629, 793, 869, 902
Alw21I	GWGCWC	1 cut(s)	986
AlwI	GGATC	2 cut(s)	725, 1008
AlwNI	CAGNNNCTG	1 cut(s)	632
AoxI	GGCC	6 cut(s)	261, 283, 310, 388, 605, 849
ApeKI	GCWGC	2 cut(s)	420, 866
ApoI	RAATTY	2 cut(s)	215, 991
AspS9I	GGNCC	3 cut(s)	453, 605, 850
AsuC2I	CCSGG	3 cut(s)	134, 317, 820
AsuHPI	GGTGA	3 cut(s)	58, 734, 947
AvaII	GGWCC	1 cut(s)	453
BaeGI	GKGCMC	1 cut(s)	589
BanI	GGYRCC	1 cut(s)	584
BauI	CACGAG	1 cut(s)	1004
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	986
BbvI	GCAGC	2 cut(s)	432, 878
BccI	CCATC	6 cut(s)	4, 248, 361, 596, 1034, 1100
BceAI	ACGGC	2 cut(s)	265, 298
BciT130I	CCWGG	2 cut(s)	339, 387
BcnI	CCSGG	3 cut(s)	134, 317, 820
BfaI	CTAG	1 cut(s)	671
BfmI	CTRYAG	1 cut(s)	1080
BisI	GCNGC	4 cut(s)	146, 421, 811, 867
BlsI	GCNGC	4 cut(s)	147, 422, 812, 868
Bme1390I	CCNGG	5 cut(s)	134, 317, 339, 387, 820
Bme18I	GGWCC	1 cut(s)	453
BmgT120I	GGNCC	3 cut(s)	453, 605, 850
BmiI	GGNNCC	5 cut(s)	376, 454, 455, 586, 619
BmrFI	CCNGG	5 cut(s)	134, 317, 339, 387, 820
BmsI	GCATC	2 cut(s)	355, 1031
BpiI	GAAGAC	1 cut(s)	111
BplI	GAGNNNNNCTC	4 cut(s)	334, 366, 637, 669
BpmI	CTGGAG	1 cut(s)	984
Bpu10I	CCTNAGC	1 cut(s)	1116
BpuMI	CCSGG	3 cut(s)	134, 317, 820
BsaHI	GRCGYC	2 cut(s)	234, 751
BsaJI	CCNNGG	3 cut(s)	338, 486, 613
Bsc4I	CCNNNNNNNGG	4 cut(s)	338, 614, 719, 1127
Bse1I	ACTGG	1 cut(s)	923
Bse3DI	GCAATG	3 cut(s)	734, 820, 1086
BseBI	CCWGG	2 cut(s)	339, 387
BseDI	CCNNGG	3 cut(s)	338, 486, 613
BseGI	GGATG	4 cut(s)	346, 353, 688, 1022
BseLI	CCNNNNNNNGG	4 cut(s)	338, 614, 719, 1127
BseMI	GCAATG	3 cut(s)	734, 820, 1086
BseMII	CTCAG	1 cut(s)	777
BseNI	ACTGG	1 cut(s)	923
BseRI	GAGGAG	1 cut(s)	198
BseSI	GKGCMC	1 cut(s)	589
BseXI	GCAGC	2 cut(s)	432, 878
BsgI	GTGCAG	1 cut(s)	1128
BshFI	GGCC	6 cut(s)	263, 285, 312, 390, 607, 851
BshNI	GGYRCC	1 cut(s)	584
BsiHKAI	GWGCWC	1 cut(s)	986
BsiSI	CCGG	3 cut(s)	134, 316, 819
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	4 cut(s)	338, 614, 719, 1127
BsmFI	GGGAC	1 cut(s)	439
BsnI	GGCC	6 cut(s)	263, 285, 312, 390, 607, 851
Bsp1286I	GDGCHC	2 cut(s)	589, 986
Bsp143I	GATC	6 cut(s)	40, 152, 295, 433, 730, 1000
BspACI	CCGC	5 cut(s)	146, 165, 180, 810, 1014
BspANI	GGCC	6 cut(s)	263, 285, 312, 390, 607, 851
BspCNI	CTCAG	1 cut(s)	778
BspLI	GGNNCC	5 cut(s)	376, 454, 455, 586, 619
BspMAI	CTGCAG	1 cut(s)	1084
BspPI	GGATC	2 cut(s)	725, 1008
BspT107I	GGYRCC	1 cut(s)	584
BsrDI	GCAATG	3 cut(s)	734, 820, 1086
BsrI	ACTGG	1 cut(s)	923
BssECI	CCNNGG	3 cut(s)	338, 486, 613
BssMI	GATC	6 cut(s)	40, 152, 295, 433, 730, 1000
BssNI	GRCGYC	2 cut(s)	234, 751
BssSI	CACGAG	1 cut(s)	1004
BssT1I	CCWWGG	2 cut(s)	486, 613
Bst2BI	CACGAG	1 cut(s)	1004
Bst2UI	CCWGG	2 cut(s)	339, 387
Bst4CI	ACNGT	3 cut(s)	374, 395, 722
BstACI	GRCGYC	2 cut(s)	234, 751
BstAPI	GCANNNNNTGC	1 cut(s)	1088
BstC8I	GCNNGC	1 cut(s)	714
BstDEI	CTNAG	4 cut(s)	786, 854, 1041, 1116
BstF5I	GGATG	4 cut(s)	346, 353, 688, 1022
BstKTI	GATC	6 cut(s)	43, 155, 298, 436, 733, 1003
BstMBI	GATC	6 cut(s)	40, 152, 295, 433, 730, 1000
BstMWI	GCNNNNNNNGC	2 cut(s)	626, 1088
BstNI	CCWGG	2 cut(s)	339, 387
BstNSI	RCATGY	1 cut(s)	206
BstSCI	CCNGG	5 cut(s)	132, 315, 337, 385, 818
BstSFI	CTRYAG	1 cut(s)	1080
BstSLI	GKGCMC	1 cut(s)	589
BstV1I	GCAGC	2 cut(s)	432, 878
BstV2I	GAAGAC	1 cut(s)	111
BstXI	CCANNNNNNTGG	1 cut(s)	308
BsuRI	GGCC	6 cut(s)	263, 285, 312, 390, 607, 851
BtsCI	GGATG	4 cut(s)	346, 353, 688, 1022
Cac8I	GCNNGC	1 cut(s)	714
CaiI	CAGNNNCTG	1 cut(s)	632
Cfr13I	GGNCC	3 cut(s)	453, 605, 850
CseI	GACGC	2 cut(s)	223, 740
Csp6I	GTAC	2 cut(s)	193, 471
CviAII	CATG	3 cut(s)	35, 203, 709
CviQI	GTAC	2 cut(s)	193, 471
DdeI	CTNAG	4 cut(s)	786, 854, 1041, 1116
DpnI	GATC	6 cut(s)	42, 154, 297, 435, 732, 1002
DpnII	GATC	6 cut(s)	40, 152, 295, 433, 730, 1000
EaeI	YGGCCR	1 cut(s)	261
EciI	GGCGGA	1 cut(s)	195
Eco130I	CCWWGG	2 cut(s)	486, 613
Eco47I	GGWCC	1 cut(s)	453
Eco57I	CTGAAG	3 cut(s)	308, 570, 783
EcoO109I	RGGNCCY	1 cut(s)	453
EcoRII	CCWGG	2 cut(s)	337, 385
EcoT14I	CCWWGG	2 cut(s)	486, 613
ErhI	CCWWGG	2 cut(s)	486, 613
FaeI	CATG	3 cut(s)	38, 206, 712
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	3 cut(s)	34, 202, 708
FauI	CCCGC	1 cut(s)	172
FblI	GTMKAC	1 cut(s)	570
Fnu4HI	GCNGC	4 cut(s)	146, 421, 811, 867
FokI	GGATG	4 cut(s)	333, 340, 695, 1009
Fsp4HI	GCNGC	4 cut(s)	146, 421, 811, 867
FspBI	CTAG	1 cut(s)	671
GluI	GCNGC	4 cut(s)	146, 421, 811, 867
GsuI	CTGGAG	1 cut(s)	984
HaeIII	GGCC	6 cut(s)	263, 285, 312, 390, 607, 851
HapII	CCGG	3 cut(s)	134, 316, 819
HgaI	GACGC	2 cut(s)	223, 740
Hin1I	GRCGYC	2 cut(s)	234, 751
Hin1II	CATG	3 cut(s)	38, 206, 712
HincII	GTYRAC	1 cut(s)	1035
HindII	GTYRAC	1 cut(s)	1035
HindIII	AAGCTT	1 cut(s)	791
HinfI	GANTC	5 cut(s)	328, 704, 725, 913, 938
HpaII	CCGG	3 cut(s)	134, 316, 819
HphI	GGTGA	3 cut(s)	58, 734, 947
Hpy166II	GTNNAC	3 cut(s)	571, 695, 1035
Hpy188I	TCNGA	8 cut(s)	327, 370, 537, 634, 703, 730, 756, 763
Hpy188III	TCNNGA	3 cut(s)	663, 963, 1004
Hpy8I	GTNNAC	3 cut(s)	571, 695, 1035
Hpy99I	CGWCG	3 cut(s)	145, 239, 982
HpyAV	CCTTC	2 cut(s)	545, 741
HpyCH4III	ACNGT	3 cut(s)	374, 395, 722
HpyCH4V	TGCA	6 cut(s)	38, 64, 997, 1022, 1082, 1145
HpyF10VI	GCNNNNNNNGC	2 cut(s)	626, 1088
HpyF3I	CTNAG	4 cut(s)	786, 854, 1041, 1116
Hsp92I	GRCGYC	2 cut(s)	234, 751
Hsp92II	CATG	3 cut(s)	38, 206, 712
KflI	GGGWCCC	1 cut(s)	453
Kzo9I	GATC	6 cut(s)	40, 152, 295, 433, 730, 1000
LmnI	GCTCC	1 cut(s)	617
Lsp1109I	GCAGC	2 cut(s)	432, 878
LweI	GCATC	2 cut(s)	355, 1031
MaeI	CTAG	1 cut(s)	671
MaeIII	GTNAC	3 cut(s)	289, 463, 722
MalI	GATC	6 cut(s)	42, 154, 297, 435, 732, 1002
MboI	GATC	6 cut(s)	40, 152, 295, 433, 730, 1000
MboII	GAAGA	9 cut(s)	99, 102, 105, 111, 147, 314, 487, 611, 1146
MhlI	GDGCHC	2 cut(s)	589, 986
MluCI	AATT	6 cut(s)	215, 677, 741, 831, 956, 991
MlyI	GAGTC	1 cut(s)	719
MmeI	TCCRAC	1 cut(s)	426
MseI	TTAA	4 cut(s)	279, 441, 675, 1153
MslI	CAYNNNNRTG	1 cut(s)	1042
MspA1I	CMGCKG	1 cut(s)	810
MspI	CCGG	3 cut(s)	134, 316, 819
MspR9I	CCNGG	5 cut(s)	134, 317, 339, 387, 820
MvaI	CCWGG	2 cut(s)	339, 387
MwoI	GCNNNNNNNGC	2 cut(s)	626, 1088
NciI	CCSGG	3 cut(s)	134, 317, 820
NdeII	GATC	6 cut(s)	40, 152, 295, 433, 730, 1000
NlaIII	CATG	3 cut(s)	38, 206, 712
NlaIV	GGNNCC	5 cut(s)	376, 454, 455, 586, 619
NmuCI	GTSAC	1 cut(s)	722
NspI	RCATGY	1 cut(s)	206
PciI	ACATGT	1 cut(s)	202
PfeI	GAWTC	4 cut(s)	328, 704, 913, 938
PflMI	CCANNNNNTGG	2 cut(s)	338, 614
PkrI	GCNGC	4 cut(s)	147, 422, 812, 868
PleI	GAGTC	1 cut(s)	719
PpsI	GAGTC	1 cut(s)	719
PpuMI	RGGWCCY	1 cut(s)	453
PscI	ACATGT	1 cut(s)	202
Psp5II	RGGWCCY	1 cut(s)	453
Psp6I	CCWGG	2 cut(s)	337, 385
PspGI	CCWGG	2 cut(s)	337, 385
PspN4I	GGNNCC	5 cut(s)	376, 454, 455, 586, 619
PspPI	GGNCC	3 cut(s)	453, 605, 850
PspPPI	RGGWCCY	1 cut(s)	453
PstI	CTGCAG	1 cut(s)	1084
PstNI	CAGNNNCTG	1 cut(s)	632
RsaI	GTAC	2 cut(s)	194, 472
RsaNI	GTAC	2 cut(s)	193, 471
RseI	CAYNNNNRTG	1 cut(s)	1042
SaqAI	TTAA	4 cut(s)	279, 441, 675, 1153
SatI	GCNGC	4 cut(s)	146, 421, 811, 867
Sau3AI	GATC	6 cut(s)	40, 152, 295, 433, 730, 1000
Sau96I	GGNCC	3 cut(s)	453, 605, 850
SchI	GAGTC	1 cut(s)	719
ScrFI	CCNGG	5 cut(s)	134, 317, 339, 387, 820
SduI	GDGCHC	2 cut(s)	589, 986
SfaNI	GCATC	2 cut(s)	355, 1031
SfcI	CTRYAG	1 cut(s)	1080
SinI	GGWCC	1 cut(s)	453
SmiMI	CAYNNNNRTG	1 cut(s)	1042
Sse9I	AATT	6 cut(s)	215, 677, 741, 831, 956, 991
SsiI	CCGC	5 cut(s)	146, 165, 180, 810, 1014
SspI	AATATT	1 cut(s)	1101
SspMI	CTAG	1 cut(s)	671
StyD4I	CCNGG	5 cut(s)	132, 315, 337, 385, 818
StyI	CCWWGG	2 cut(s)	486, 613
TaaI	ACNGT	3 cut(s)	374, 395, 722
TaqI	TCGA	4 cut(s)	219, 655, 980, 1132
TasI	AATT	6 cut(s)	215, 677, 741, 831, 956, 991
TauI	GCSGC	2 cut(s)	148, 813
TfiI	GAWTC	4 cut(s)	328, 704, 913, 938
Tru1I	TTAA	4 cut(s)	279, 441, 675, 1153
Tru9I	TTAA	4 cut(s)	279, 441, 675, 1153
TseFI	GTSAC	1 cut(s)	722
TseI	GCWGC	2 cut(s)	420, 866
Tsp45I	GTSAC	1 cut(s)	722
TspDTI	ATGAA	2 cut(s)	509, 969
Van91I	CCANNNNNTGG	2 cut(s)	338, 614
VpaK11BI	GGWCC	1 cut(s)	453
XapI	RAATTY	2 cut(s)	215, 991
XceI	RCATGY	1 cut(s)	206
XmiI	GTMKAC	1 cut(s)	570
XspI	CTAG	1 cut(s)	671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.