Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008434

Physical Location & Seq

Genomic Coordinates Reverse (-)

294807 .. 296896

Gene Structure 2090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g00470.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGGGGAAGAAGGTATGCTGATGGAAAGCGAGTTTTGTTCTAGTCATGCGGATCAGATGCTTTCGTCCTCTTTGCATAACCGATACAATAACTCCAACAGCAATCCAATGTTGGCTTCTTCTTCTTCGTCTTCCCCTTTTCTCCCTGTTTCGTCGCCGCCGCGGTCTACCTCTCCCGCTTTGGTAGGTGGCGGAGGCGGTGGAGCAGCGTATATAGAACACGTCGTTTCCAAGTTCGACACGCTTGCTGGCGTCGCCATCAAATACGGCGTTGAGGTGGCCGACATCAAAAAGATGAACGGCCTTGTTACAGATCGCCAAATGTTTGGCCTCCGGTTTCTTCAGATTCCACTACCGGGGAGGCATCCTCCATCCCCATGTTTATCAGATGGTTCCAAGACTCCAGGCCAGACTAGTTCTGACCAGAACCCACCTCGCAGCATACAGTGTGATCTGGTTGACTCATTCGGGTCCCTTAGAGTTACTCCTCCGAAGAAACCCTCCCCGGCTATGAACTCGTTACAAAGTTATTACGGGCTGAAACCAAGAAATCAGAACTCTATAACTGAAGGTTTTGAAATGGCAGTCTACAAAAATGGAGGTTCCCATTATTTAGAAGAGGGACCATTCCTTGGAGCCTCACCAGCTTCTGACCAACCATTGAGACAATATCGAAAGTCAAGGAGCCTAGTTAAGTTGGATGAGAATAGTGAACTTTCTGATTCCATGTCTGCAGAAGGTGACCCTGATCCATTGGGGGATAAATGGATTAGAAGGCGTCAGAAATCTGAAGCAGACTTCTCTCGCACCCCTGAGAAGCTTTTGGGAGGTAACAGCGGCAGTGCCAGCAGTGCCGGGTTTTCAGCAATTTCAGGGCAGCGCTTAGCCCTTAGACCCACAGCAGCTAATAGAACTGCTTTAGGAAACGATGTTGAAGCTGGTGGCTTGAATCCTATACAAGTAGGTATGGGTGATTCTCTCACAGCAGATGGGTTATTTGGAGTGAGGAAGTCGTCAAGCACATCAAATTTGCAGGATCACGAGAGTAGCGGCTCTGCATCCATCTGGTCAACATCTAAGTGGAGTTTGAAGCCAGACTTACAAGCCTTTTCAACTGCAGCAATTGCGAAACCAATATTTGATGGTTTGCCTAAACCGATAGCAGGTCGAAGAAAAACTGCACTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM

Protein Analysis

397

Amino Acids

42.03

Weight (kDa)

8.31

Isoelectric Point (pI)

54.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08200 AT5G23130
fragaria_vesca	FvH4_4g36950 FvH4_4g36950
malus_domestica	MD13G1005700.v1.1 MD16G1002200.v1.1
prunus_persica	Prupe.1G347300_v2.0.a1 Prupe.1G347300_v2.0.a1 Prupe.1G347300_v2.0.a1
pyrus_communis	pycom13g00470 pycom16g00350
rosa_chinensis	RchiOBHm_Chr4g0446721
rosa_laevigata	RLG00000005637
rosa_multiflora	Rmu_sc0001753.1_g000037
rosa_roxburghii	Rroxscaffold_5G00387060
rosa_rugosa	Rorug04G0374000 Rorug04G0374100 Rorug04G0374200
rosa_samantha	Rh4AG435600 Rh4BG444400 Rh4CG461700 Rh4DG443400
rosa_wichuraiana	Rw4G037230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1154
AccB7I	CCANNNNNTGG	1 cut(s)	632
AccI	GTMKAC	2 cut(s)	167, 588
AccII	CGCG	1 cut(s)	163
AciI	CCGC	9 cut(s)	50, 158, 161, 163, 177, 192, 198, 837, 1050
AclWI	GGATC	3 cut(s)	60, 743, 1044
AcoI	YGGCCR	1 cut(s)	279
AcsI	RAATTY	1 cut(s)	1027
AcuI	CTGAAG	3 cut(s)	326, 588, 810
AcyI	GRCGYC	2 cut(s)	252, 778
AfeI	AGCGCT	1 cut(s)	881
AfiI	CCNNNNNNNGG	3 cut(s)	356, 632, 1163
AflIII	ACRYGT	1 cut(s)	220
AgsI	TTSAA	5 cut(s)	578, 935, 949, 1090, 1113
AhlI	ACTAGT	1 cut(s)	413
AjiI	CACGTC	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	403
AjuI	GAANNNNNNNTTGG	2 cut(s)	100, 132
AluBI	AGCT	4 cut(s)	647, 820, 905, 938
AluI	AGCT	4 cut(s)	647, 820, 905, 938
Alw26I	GTCTC	1 cut(s)	658
AlwI	GGATC	3 cut(s)	60, 743, 1044
AlwNI	CAGNNNCTG	1 cut(s)	650
Aor51HI	AGCGCT	1 cut(s)	881
AoxI	GGCC	4 cut(s)	279, 301, 328, 406
ApeKI	GCWGC	5 cut(s)	206, 438, 877, 902, 1118
ApoI	RAATTY	1 cut(s)	1027
AspLEI	GCGC	1 cut(s)	882
AspS9I	GGNCC	2 cut(s)	471, 623
AsuC2I	CCSGG	3 cut(s)	357, 506, 856
AsuHPI	GGTGA	3 cut(s)	633, 752, 983
AvaII	GGWCC	2 cut(s)	471, 623
BauI	CACGAG	1 cut(s)	1040
BbsI	GAAGAC	1 cut(s)	123
BbvI	GCAGC	5 cut(s)	218, 450, 889, 914, 1130
BccI	CCATC	7 cut(s)	16, 266, 379, 383, 983, 1070, 1136
BceAI	ACGGC	2 cut(s)	283, 316
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BciT130I	CCWGG	1 cut(s)	405
BcnI	CCSGG	3 cut(s)	357, 506, 856
BcoDI	GTCTC	1 cut(s)	658
BcuI	ACTAGT	1 cut(s)	413
BfaI	CTAG	3 cut(s)	42, 414, 689
BfmI	CTRYAG	2 cut(s)	732, 1116
BfoI	RGCGCY	1 cut(s)	883
BfuAI	ACCTGC	1 cut(s)	1154
BisI	GCNGC	9 cut(s)	158, 161, 207, 439, 838, 878, 903, 1051, 1119
BlpI	GCTNAGC	1 cut(s)	883
BlsI	GCNGC	9 cut(s)	159, 162, 208, 440, 839, 879, 904, 1052, 1120
Bme1390I	CCNGG	4 cut(s)	357, 405, 506, 856
Bme18I	GGWCC	2 cut(s)	471, 623
BmgBI	CACGTC	1 cut(s)	223
BmgT120I	GGNCC	2 cut(s)	471, 623
BmiI	GGNNCC	7 cut(s)	394, 472, 473, 604, 624, 637, 686
BmrFI	CCNGG	4 cut(s)	357, 405, 506, 856
BmsI	GCATC	3 cut(s)	48, 373, 1067
BpiI	GAAGAC	1 cut(s)	123
BplI	GAGNNNNNCTC	2 cut(s)	352, 384
BpmI	CTGGAG	1 cut(s)	387
Bpu1102I	GCTNAGC	1 cut(s)	883
BpuMI	CCSGG	3 cut(s)	357, 506, 856
BsaHI	GRCGYC	2 cut(s)	252, 778
BsaJI	CCNNGG	4 cut(s)	161, 356, 504, 631
BsaWI	WCCGGW	1 cut(s)	333
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bsc4I	CCNNNNNNNGG	3 cut(s)	356, 632, 1163
BseBI	CCWGG	1 cut(s)	405
BseDI	CCNNGG	4 cut(s)	161, 356, 504, 631
BseGI	GGATG	4 cut(s)	364, 371, 706, 1058
BseLI	CCNNNNNNNGG	3 cut(s)	356, 632, 1163
BseMII	CTCAG	1 cut(s)	804
BseRI	GAGGAG	1 cut(s)	477
BseXI	GCAGC	5 cut(s)	218, 450, 889, 914, 1130
BsgI	GTGCAG	1 cut(s)	1164
Bsh1236I	CGCG	1 cut(s)	163
BshFI	GGCC	4 cut(s)	281, 303, 330, 408
BsiSI	CCGG	4 cut(s)	334, 356, 506, 855
BslFI	GGGAC	2 cut(s)	457, 636
BslI	CCNNNNNNNGG	3 cut(s)	356, 632, 1163
BsmAI	GTCTC	1 cut(s)	658
BsmFI	GGGAC	2 cut(s)	457, 636
BsnI	GGCC	4 cut(s)	281, 303, 330, 408
Bsp143I	GATC	5 cut(s)	52, 313, 451, 748, 1036
Bsp1720I	GCTNAGC	1 cut(s)	883
BspACI	CCGC	9 cut(s)	50, 158, 161, 163, 177, 192, 198, 837, 1050
BspANI	GGCC	4 cut(s)	281, 303, 330, 408
BspCNI	CTCAG	1 cut(s)	805
BspFNI	CGCG	1 cut(s)	163
BspLI	GGNNCC	7 cut(s)	394, 472, 473, 604, 624, 637, 686
BspMAI	CTGCAG	2 cut(s)	736, 1120
BspMI	ACCTGC	1 cut(s)	1154
BspPI	GGATC	3 cut(s)	60, 743, 1044
BssECI	CCNNGG	4 cut(s)	161, 356, 504, 631
BssMI	GATC	5 cut(s)	52, 313, 451, 748, 1036
BssNI	GRCGYC	2 cut(s)	252, 778
BssSI	CACGAG	1 cut(s)	1040
BssT1I	CCWWGG	1 cut(s)	631
Bst2BI	CACGAG	1 cut(s)	1040
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	1 cut(s)	447
Bst6I	CTCTTC	1 cut(s)	612
BstACI	GRCGYC	2 cut(s)	252, 778
BstAPI	GCANNNNNTGC	1 cut(s)	1124
BstC8I	GCNNGC	3 cut(s)	246, 250, 847
BstDEI	CTNAG	5 cut(s)	476, 813, 883, 890, 1077
BstDSI	CCRYGG	1 cut(s)	161
BstEII	GGTNACC	1 cut(s)	740
BstF5I	GGATG	4 cut(s)	364, 371, 706, 1058
BstFNI	CGCG	1 cut(s)	163
BstH2I	RGCGCY	1 cut(s)	883
BstHHI	GCGC	1 cut(s)	882
BstKTI	GATC	5 cut(s)	55, 316, 454, 751, 1039
BstMAI	GTCTC	1 cut(s)	658
BstMBI	GATC	5 cut(s)	52, 313, 451, 748, 1036
BstMWI	GCNNNNNNNGC	5 cut(s)	254, 644, 846, 851, 1124
BstNI	CCWGG	1 cut(s)	405
BstPI	GGTNACC	1 cut(s)	740
BstSCI	CCNGG	4 cut(s)	355, 403, 504, 854
BstSFI	CTRYAG	2 cut(s)	732, 1116
BstUI	CGCG	1 cut(s)	163
BstV1I	GCAGC	5 cut(s)	218, 450, 889, 914, 1130
BstV2I	GAAGAC	1 cut(s)	123
BstXI	CCANNNNNNTGG	1 cut(s)	326
BsuRI	GGCC	4 cut(s)	281, 303, 330, 408
BtgI	CCRYGG	1 cut(s)	161
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	4 cut(s)	364, 371, 706, 1058
BtsI	GCAGTG	2 cut(s)	847, 856
BtsIMutI	CAGTG	3 cut(s)	452, 847, 856
BveI	ACCTGC	1 cut(s)	1154
Cac8I	GCNNGC	3 cut(s)	246, 250, 847
CaiI	CAGNNNCTG	1 cut(s)	650
CfoI	GCGC	1 cut(s)	882
Cfr13I	GGNCC	2 cut(s)	471, 623
Cfr42I	CCGCGG	1 cut(s)	164
CseI	GACGC	2 cut(s)	241, 767
CviAII	CATG	3 cut(s)	47, 378, 727
DdeI	CTNAG	5 cut(s)	476, 813, 883, 890, 1077
DpnI	GATC	5 cut(s)	54, 315, 453, 750, 1038
DpnII	GATC	5 cut(s)	52, 313, 451, 748, 1036
EaeI	YGGCCR	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	612
EarI	CTCTTC	1 cut(s)	612
EciI	GGCGGA	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	631
Eco47I	GGWCC	2 cut(s)	471, 623
Eco47III	AGCGCT	1 cut(s)	881
Eco57I	CTGAAG	3 cut(s)	326, 588, 810
Eco91I	GGTNACC	1 cut(s)	740
EcoO109I	RGGNCCY	1 cut(s)	471
EcoO65I	GGTNACC	1 cut(s)	740
EcoRII	CCWGG	1 cut(s)	403
EcoT14I	CCWWGG	1 cut(s)	631
ErhI	CCWWGG	1 cut(s)	631
FaeI	CATG	3 cut(s)	50, 381, 730
FalI	AAGNNNNNCTT	2 cut(s)	1082, 1114
FaqI	GGGAC	2 cut(s)	457, 636
FatI	CATG	3 cut(s)	46, 377, 726
FauI	CCCGC	1 cut(s)	184
FblI	GTMKAC	2 cut(s)	167, 588
Fnu4HI	GCNGC	9 cut(s)	158, 161, 207, 439, 838, 878, 903, 1051, 1119
FokI	GGATG	4 cut(s)	351, 358, 713, 1045
Fsp4HI	GCNGC	9 cut(s)	158, 161, 207, 439, 838, 878, 903, 1051, 1119
FspBI	CTAG	3 cut(s)	42, 414, 689
GlaI	GCGC	1 cut(s)	881
GluI	GCNGC	9 cut(s)	158, 161, 207, 439, 838, 878, 903, 1051, 1119
GsuI	CTGGAG	1 cut(s)	387
HaeII	RGCGCY	1 cut(s)	883
HaeIII	GGCC	4 cut(s)	281, 303, 330, 408
HapII	CCGG	4 cut(s)	334, 356, 506, 855
HgaI	GACGC	2 cut(s)	241, 767
HhaI	GCGC	1 cut(s)	882
Hin1I	GRCGYC	2 cut(s)	252, 778
Hin1II	CATG	3 cut(s)	50, 381, 730
Hin6I	GCGC	1 cut(s)	880
HinP1I	GCGC	1 cut(s)	880
HincII	GTYRAC	2 cut(s)	460, 1071
HindII	GTYRAC	2 cut(s)	460, 1071
HindIII	AAGCTT	1 cut(s)	818
HinfI	GANTC	6 cut(s)	346, 400, 461, 722, 949, 974
HpaII	CCGG	4 cut(s)	334, 356, 506, 855
HphI	GGTGA	3 cut(s)	633, 752, 983
Hpy166II	GTNNAC	5 cut(s)	168, 460, 589, 713, 1071
Hpy188III	TCNNGA	1 cut(s)	1040
Hpy8I	GTNNAC	5 cut(s)	168, 460, 589, 713, 1071
Hpy99I	CGWCG	3 cut(s)	157, 227, 257
HpyAV	CCTTC	4 cut(s)	5, 563, 731, 768
HpyCH4III	ACNGT	1 cut(s)	447
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	6 cut(s)	76, 734, 1033, 1058, 1118, 1181
HpyF10VI	GCNNNNNNNGC	5 cut(s)	254, 644, 846, 851, 1124
HpyF3I	CTNAG	5 cut(s)	476, 813, 883, 890, 1077
HpySE526I	ACGT	1 cut(s)	222
Hsp92I	GRCGYC	2 cut(s)	252, 778
Hsp92II	CATG	3 cut(s)	50, 381, 730
HspAI	GCGC	1 cut(s)	880
KflI	GGGWCCC	1 cut(s)	471
KspI	CCGCGG	1 cut(s)	164
Kzo9I	GATC	5 cut(s)	52, 313, 451, 748, 1036
LmnI	GCTCC	3 cut(s)	203, 635, 684
Lsp1109I	GCAGC	5 cut(s)	218, 450, 889, 914, 1130
LweI	GCATC	3 cut(s)	48, 373, 1067
MaeI	CTAG	3 cut(s)	42, 414, 689
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	5 cut(s)	307, 481, 519, 740, 830
MalI	GATC	5 cut(s)	54, 315, 453, 750, 1038
MboI	GATC	5 cut(s)	52, 313, 451, 748, 1036
MboII	GAAGA	9 cut(s)	20, 111, 114, 117, 123, 332, 505, 629, 1182
MfeI	CAATTG	1 cut(s)	1122
MluCI	AATT	3 cut(s)	867, 1027, 1122
MlyI	GAGTC	2 cut(s)	394, 455
MmeI	TCCRAC	2 cut(s)	120, 678
MseI	TTAA	1 cut(s)	693
MslI	CAYNNNNRTG	2 cut(s)	376, 1078
MspA1I	CMGCKG	2 cut(s)	163, 837
MspI	CCGG	4 cut(s)	334, 356, 506, 855
MspR9I	CCNGG	4 cut(s)	357, 405, 506, 856
MunI	CAATTG	1 cut(s)	1122
MvaI	CCWGG	1 cut(s)	405
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	5 cut(s)	254, 644, 846, 851, 1124
NciI	CCSGG	3 cut(s)	357, 506, 856
NdeII	GATC	5 cut(s)	52, 313, 451, 748, 1036
NlaIII	CATG	3 cut(s)	50, 381, 730
NlaIV	GGNNCC	7 cut(s)	394, 472, 473, 604, 624, 637, 686
NmuCI	GTSAC	1 cut(s)	740
PfeI	GAWTC	4 cut(s)	346, 722, 949, 974
PflMI	CCANNNNNTGG	1 cut(s)	632
PkrI	GCNGC	9 cut(s)	159, 162, 208, 440, 839, 879, 904, 1052, 1120
PleI	GAGTC	2 cut(s)	394, 455
PpsI	GAGTC	2 cut(s)	394, 455
PpuMI	RGGWCCY	1 cut(s)	471
Psp5II	RGGWCCY	1 cut(s)	471
Psp6I	CCWGG	1 cut(s)	403
PspEI	GGTNACC	1 cut(s)	740
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	7 cut(s)	394, 472, 473, 604, 624, 637, 686
PspPI	GGNCC	2 cut(s)	471, 623
PspPPI	RGGWCCY	1 cut(s)	471
PstI	CTGCAG	2 cut(s)	736, 1120
PstNI	CAGNNNCTG	1 cut(s)	650
RseI	CAYNNNNRTG	2 cut(s)	376, 1078
SacII	CCGCGG	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	693
SatI	GCNGC	9 cut(s)	158, 161, 207, 439, 838, 878, 903, 1051, 1119
Sau3AI	GATC	5 cut(s)	52, 313, 451, 748, 1036
Sau96I	GGNCC	2 cut(s)	471, 623
SchI	GAGTC	2 cut(s)	394, 455
ScrFI	CCNGG	4 cut(s)	357, 405, 506, 856
SfaNI	GCATC	3 cut(s)	48, 373, 1067
SfcI	CTRYAG	2 cut(s)	732, 1116
Sfr303I	CCGCGG	1 cut(s)	164
SgrBI	CCGCGG	1 cut(s)	164
SinI	GGWCC	2 cut(s)	471, 623
SmiMI	CAYNNNNRTG	2 cut(s)	376, 1078
SpeI	ACTAGT	1 cut(s)	413
Sse9I	AATT	3 cut(s)	867, 1027, 1122
SsiI	CCGC	9 cut(s)	50, 158, 161, 163, 177, 192, 198, 837, 1050
SspI	AATATT	1 cut(s)	1137
SspMI	CTAG	3 cut(s)	42, 414, 689
StyD4I	CCNGG	4 cut(s)	355, 403, 504, 854
StyI	CCWWGG	1 cut(s)	631
TaaI	ACNGT	1 cut(s)	447
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	3 cut(s)	237, 673, 1168
TasI	AATT	3 cut(s)	867, 1027, 1122
TauI	GCSGC	4 cut(s)	160, 163, 840, 1053
TfiI	GAWTC	4 cut(s)	346, 722, 949, 974
Tru1I	TTAA	1 cut(s)	693
Tru9I	TTAA	1 cut(s)	693
TscAI	CASTG	3 cut(s)	452, 847, 856
TseFI	GTSAC	1 cut(s)	740
TseI	GCWGC	5 cut(s)	206, 438, 877, 902, 1118
Tsp45I	GTSAC	1 cut(s)	740
TspDTI	ATGAA	2 cut(s)	311, 527
TspRI	CASTG	3 cut(s)	452, 847, 856
Van91I	CCANNNNNTGG	1 cut(s)	632
VpaK11BI	GGWCC	2 cut(s)	471, 623
XapI	RAATTY	1 cut(s)	1027
XmiI	GTMKAC	2 cut(s)	167, 588
XspI	CTAG	3 cut(s)	42, 414, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.