Rorug04G0374000

Peptidoglycan-binding LysM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0008434
Physical Location & Seq
Forward (+)
54498651 .. 54498991
341 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0374000.1

Sequence Viewer

Length: 183 bp
ATGCTTTACAGGGTACGACTGAATGTTCTAATGGAGTCTAAAGGCGGTAAAAAGTCTAGCAGTAGTAAATCCTTATTCTACGAAGCACCTCTCGGATACAGCATTGAAGACGTTCGACCCAACGGTGGAATCAAGAAGTTCAGATCTGCTGCCTACTCCAACTGCGCTCGCAAGCCATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

60

Amino Acids

6.67

Weight (kDa)

10.08

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AdoMetDC_leader PF08132 11 - 60 1.8e-32 S-adenosyl-l-methionine decarboxylase leader peptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 45
AfaI GTAC 1 cut(s) 15
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 1 cut(s) 107
ApeKI GCWGC 1 cut(s) 149
Asp700I GAANNNNTTC 1 cut(s) 111
AspLEI GCGC 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 136
BciVI GTATCC 1 cut(s) 89
BfaI CTAG 1 cut(s) 57
BfuI GTATCC 1 cut(s) 89
BglII AGATCT 1 cut(s) 143
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
BpiI GAAGAC 1 cut(s) 114
Bsc4I CCNNNNNNNGG 1 cut(s) 125
BseGI GGATG 1 cut(s) 176
BseLI CCNNNNNNNGG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 136
BslI CCNNNNNNNGG 1 cut(s) 125
Bsp143I GATC 1 cut(s) 143
BspACI CCGC 1 cut(s) 45
BssMI GATC 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 125
BstC8I GCNNGC 2 cut(s) 169, 173
BstF5I GGATG 1 cut(s) 176
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 1 cut(s) 146
BstMBI GATC 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 136
BstV2I GAAGAC 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 143
BstYI RGATCY 1 cut(s) 143
BsuI GTATCC 1 cut(s) 89
BtsCI GGATG 1 cut(s) 176
Cac8I GCNNGC 2 cut(s) 169, 173
CfoI GCGC 1 cut(s) 167
Csp6I GTAC 1 cut(s) 14
CviJI RGCY 1 cut(s) 175
CviKI_1 RGCY 1 cut(s) 175
CviQI GTAC 1 cut(s) 14
DpnI GATC 1 cut(s) 145
DpnII GATC 1 cut(s) 143
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 1 cut(s) 163
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 1 cut(s) 57
GlaI GCGC 1 cut(s) 166
GluI GCNGC 1 cut(s) 150
HhaI GCGC 1 cut(s) 167
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HinfI GANTC 2 cut(s) 35, 129
Hpy188I TCNGA 2 cut(s) 95, 143
Hpy188III TCNNGA 2 cut(s) 133, 180
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4IV ACGT 1 cut(s) 111
HpySE526I ACGT 1 cut(s) 111
HspAI GCGC 1 cut(s) 165
Kzo9I GATC 1 cut(s) 143
Lsp1109I GCAGC 1 cut(s) 136
MaeI CTAG 1 cut(s) 57
MaeII ACGT 1 cut(s) 111
MalI GATC 1 cut(s) 145
MboI GATC 1 cut(s) 143
MboII GAAGA 1 cut(s) 119
MflI RGATCY 1 cut(s) 143
MlyI GAGTC 1 cut(s) 44
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 1 cut(s) 99
MroXI GAANNNNTTC 1 cut(s) 111
NdeII GATC 1 cut(s) 143
PdmI GAANNNNTTC 1 cut(s) 111
PfeI GAWTC 1 cut(s) 129
PkrI GCNGC 1 cut(s) 151
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
PsuI RGATCY 1 cut(s) 143
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 1 cut(s) 143
SchI GAGTC 1 cut(s) 44
SetI ASST 2 cut(s) 91, 114
SgeI CNNG 4 cut(s) 22, 69, 104, 145
SsiI CCGC 1 cut(s) 45
SspMI CTAG 1 cut(s) 57
TaaI ACNGT 1 cut(s) 125
TaiI ACGT 1 cut(s) 114
TaqI TCGA 1 cut(s) 115
TfiI GAWTC 1 cut(s) 129
TseI GCWGC 1 cut(s) 149
XmnI GAANNNNTTC 1 cut(s) 111
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.