Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007424

Physical Location & Seq

Genomic Coordinates Reverse (-)

3125038 .. 3126379

Gene Structure 1342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G09995.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTTATTCTCGCCTTCGAAATTGCAATCACCCCAATCTCTAATCTCTTGGAATCCGATTCTCCATAACGGATTCATCGATAAAAATCTCTCCTTTCGCCGACGGGTCACTCTCCGGCTAGCTTCACCGATTTCACGATTGACCAAGGGTTCAGACTCAATCGCATCTTCTACTCCCTCTGCATTGTACTCGAATCCTCAGGAGCCATCGATCTCTTCCCAATTAACATCGTCCGTGGGACAGCCTCCTCTCCAACTCTCTCAATGGACATTCACACAGAAGCACTTCGTCTTGCTCAATGTCGTCGCTTGCGTGACAGCAATTTCAGCATCGTGGCTCTTCTTTGCTGCGATTCCTACTCTTCTGGCTTTCAAGAAAGCAGCTGAGTCTCTTGAAAAGCTTTTGGATGTAACTAGAGAAGAGCTACCAGATACAATGGCTGCTGTTCGTTTATCGGGAATGGAGATCAGTGACTTAACTATGGAGCTCAGTGATTTAGGCCAAGGTATCACTCAAGGTGTTAAAAGCTCGACACGGGCTATTCGTGTAGCTGAAGATAGACTAAGACGGTTAACAAACATGAATCCAGGAGGTGATGCGTCAAACCAAGACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

22.45

Weight (kDa)

9.51

Isoelectric Point (pI)

52.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09995 AT5G09995 AT5G09995
fragaria_vesca	FvH4_1g22170 FvH4_1g22170 FvH4_1g22170
malus_domestica	MD01G1018800.v1.1 MD15G1333500.v1.1
prunus_persica	Prupe.6G174000_v2.0.a1 Prupe.6G174000_v2.0.a1 Prupe.6G174000_v2.0.a1
pyrus_communis	pycom01g04870 pycom15g29200
rosa_chinensis	RchiOBHm_Chr2g0116241
rosa_laevigata	RLG00000018250
rosa_multiflora	Rmu_sc0003499.1_g000013 Rmu_sc0004888.1_g000063
rosa_roxburghii	Rroxscaffold_2G00127400
rosa_rugosa	Rorug02G0205100 Rorug02G0205200
rosa_samantha	Rh2AG260700 Rh2BG271800 Rh2CG266900 Rh2DG268900
rosa_wichuraiana	Rw2G020440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	573
AfaI	GTAC	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	373, 395
AjnI	CCWGG	1 cut(s)	586
AluBI	AGCT	7 cut(s)	122, 383, 400, 424, 487, 528, 551
AluI	AGCT	7 cut(s)	122, 383, 400, 424, 487, 528, 551
Alw21I	GWGCWC	1 cut(s)	489
Alw26I	GTCTC	1 cut(s)	393
AoxI	GGCC	1 cut(s)	499
ApeKI	GCWGC	3 cut(s)	347, 380, 440
Asp700I	GAANNNNTTC	1 cut(s)	284
AsuHPI	GGTGA	3 cut(s)	21, 117, 605
AsuII	TTCGAA	1 cut(s)	17
AsuNHI	GCTAGC	1 cut(s)	118
AxyI	CCTNAGG	1 cut(s)	198
BanII	GRGCYC	1 cut(s)	489
Bbv12I	GWGCWC	1 cut(s)	489
BbvI	GCAGC	3 cut(s)	334, 392, 427
BccI	CCATC	1 cut(s)	214
BcgI	CGANNNNNNTGC	2 cut(s)	171, 205
BciT130I	CCWGG	1 cut(s)	588
BcoDI	GTCTC	1 cut(s)	393
BfaI	CTAG	2 cut(s)	119, 414
BisI	GCNGC	3 cut(s)	348, 381, 441
BlsI	GCNGC	3 cut(s)	349, 382, 442
Bme1390I	CCNGG	1 cut(s)	588
BmiI	GGNNCC	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	588
BmsI	GCATC	3 cut(s)	173, 338, 586
BmtI	GCTAGC	1 cut(s)	122
Bpu14I	TTCGAA	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	498
Bsa29I	ATCGAT	2 cut(s)	78, 209
BsaBI	GATNNNNATC	1 cut(s)	84
BsaJI	CCNNGG	3 cut(s)	144, 234, 502
Bse21I	CCTNAGG	1 cut(s)	198
Bse8I	GATNNNNATC	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	588
BseCI	ATCGAT	2 cut(s)	78, 209
BseDI	CCNNGG	3 cut(s)	144, 234, 502
BseGI	GGATG	1 cut(s)	412
BseJI	GATNNNNATC	1 cut(s)	84
BseMII	CTCAG	3 cut(s)	212, 375, 502
BseRI	GAGGAG	1 cut(s)	237
BseXI	GCAGC	3 cut(s)	334, 392, 427
BshFI	GGCC	1 cut(s)	501
BshVI	ATCGAT	2 cut(s)	78, 209
BsiHKAI	GWGCWC	1 cut(s)	489
BsiSI	CCGG	1 cut(s)	115
BslFI	GGGAC	1 cut(s)	252
BsmAI	GTCTC	1 cut(s)	393
BsmFI	GGGAC	1 cut(s)	252
BsnI	GGCC	1 cut(s)	501
Bsp119I	TTCGAA	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	489
Bsp143I	GATC	2 cut(s)	210, 465
BspANI	GGCC	1 cut(s)	501
BspCNI	CTCAG	3 cut(s)	211, 376, 501
BspDI	ATCGAT	2 cut(s)	78, 209
BspLI	GGNNCC	1 cut(s)	204
BspOI	GCTAGC	1 cut(s)	122
BspQI	GCTCTTC	2 cut(s)	344, 414
BspT104I	TTCGAA	1 cut(s)	17
BssECI	CCNNGG	3 cut(s)	144, 234, 502
BssMI	GATC	2 cut(s)	210, 465
BssT1I	CCWWGG	2 cut(s)	144, 502
Bst2UI	CCWGG	1 cut(s)	588
Bst4CI	ACNGT	1 cut(s)	570
Bst6I	CTCTTC	4 cut(s)	220, 344, 366, 414
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	120, 310
BstDEI	CTNAG	4 cut(s)	198, 384, 488, 563
BstDSI	CCRYGG	1 cut(s)	234
BstF5I	GGATG	1 cut(s)	412
BstKTI	GATC	2 cut(s)	213, 468
BstMAI	GTCTC	1 cut(s)	393
BstMBI	GATC	2 cut(s)	210, 465
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNI	CCWGG	1 cut(s)	588
BstSCI	CCNGG	1 cut(s)	586
BstV1I	GCAGC	3 cut(s)	334, 392, 427
Bsu15I	ATCGAT	2 cut(s)	78, 209
Bsu36I	CCTNAGG	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	501
BsuTUI	ATCGAT	2 cut(s)	78, 209
BtgI	CCRYGG	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	412
BtsIMutI	CAGTG	2 cut(s)	475, 496
Cac8I	GCNNGC	2 cut(s)	120, 310
ClaI	ATCGAT	2 cut(s)	78, 209
CseI	GACGC	1 cut(s)	588
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	1 cut(s)	580
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	4 cut(s)	198, 384, 488, 563
DpnI	GATC	2 cut(s)	212, 467
DpnII	GATC	2 cut(s)	210, 465
Eam1104I	CTCTTC	4 cut(s)	220, 344, 366, 414
EarI	CTCTTC	4 cut(s)	220, 344, 366, 414
Ecl136II	GAGCTC	1 cut(s)	487
Eco130I	CCWWGG	2 cut(s)	144, 502
Eco24I	GRGCYC	1 cut(s)	489
Eco53kI	GAGCTC	1 cut(s)	487
Eco57I	CTGAAG	1 cut(s)	573
Eco81I	CCTNAGG	1 cut(s)	198
EcoICRI	GAGCTC	1 cut(s)	487
EcoRII	CCWGG	1 cut(s)	586
EcoT14I	CCWWGG	2 cut(s)	144, 502
EcoT38I	GRGCYC	1 cut(s)	489
ErhI	CCWWGG	2 cut(s)	144, 502
FaeI	CATG	1 cut(s)	583
FaiI	YATR	3 cut(s)	66, 482, 581
FaqI	GGGAC	1 cut(s)	252
FatI	CATG	1 cut(s)	579
Fnu4HI	GCNGC	3 cut(s)	348, 381, 441
FokI	GGATG	1 cut(s)	419
FriOI	GRGCYC	1 cut(s)	489
Fsp4HI	GCNGC	3 cut(s)	348, 381, 441
FspBI	CTAG	2 cut(s)	119, 414
GluI	GCNGC	3 cut(s)	348, 381, 441
HaeIII	GGCC	1 cut(s)	501
HapII	CCGG	1 cut(s)	115
HgaI	GACGC	1 cut(s)	588
Hin1II	CATG	1 cut(s)	583
HincII	GTYRAC	1 cut(s)	573
HindII	GTYRAC	1 cut(s)	573
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	8 cut(s)	52, 58, 72, 155, 193, 352, 386, 583
HpaI	GTTAAC	1 cut(s)	573
HpaII	CCGG	1 cut(s)	115
HphI	GGTGA	3 cut(s)	21, 117, 605
Hpy166II	GTNNAC	1 cut(s)	573
Hpy188I	TCNGA	2 cut(s)	57, 154
Hpy188III	TCNNGA	5 cut(s)	135, 200, 373, 392, 456
Hpy8I	GTNNAC	1 cut(s)	573
Hpy99I	CGWCG	2 cut(s)	105, 308
HpyAV	CCTTC	1 cut(s)	24
HpyCH4III	ACNGT	1 cut(s)	570
HpyCH4V	TGCA	2 cut(s)	25, 182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	4 cut(s)	198, 384, 488, 563
Hsp92II	CATG	1 cut(s)	583
KspAI	GTTAAC	1 cut(s)	573
Kzo9I	GATC	2 cut(s)	210, 465
LguI	GCTCTTC	2 cut(s)	344, 414
LmnI	GCTCC	2 cut(s)	202, 484
LpnPI	CCDG	6 cut(s)	128, 185, 350, 441, 573, 600
Lsp1109I	GCAGC	3 cut(s)	334, 392, 427
LweI	GCATC	3 cut(s)	173, 338, 586
MaeI	CTAG	2 cut(s)	119, 414
MaeIII	GTNAC	4 cut(s)	106, 313, 409, 470
MalI	GATC	2 cut(s)	212, 467
MboI	GATC	2 cut(s)	210, 465
MboII	GAAGA	6 cut(s)	159, 207, 331, 353, 431, 566
MhlI	GDGCHC	1 cut(s)	489
MluCI	AATT	3 cut(s)	20, 221, 321
MlyI	GAGTC	2 cut(s)	149, 395
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	5 cut(s)	187, 207, 255, 258, 584
MroXI	GAANNNNTTC	1 cut(s)	284
MseI	TTAA	4 cut(s)	224, 476, 522, 572
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	1 cut(s)	115
MspR9I	CCNGG	1 cut(s)	588
MvaI	CCWGG	1 cut(s)	588
MwoI	GCNNNNNNNGC	1 cut(s)	326
NdeII	GATC	2 cut(s)	210, 465
NheI	GCTAGC	1 cut(s)	118
NlaIII	CATG	1 cut(s)	583
NlaIV	GGNNCC	1 cut(s)	204
NmuCI	GTSAC	3 cut(s)	106, 313, 470
NspV	TTCGAA	1 cut(s)	17
PciSI	GCTCTTC	2 cut(s)	344, 414
PcsI	WCGNNNNNNNCGW	3 cut(s)	75, 309, 541
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	6 cut(s)	52, 58, 72, 193, 352, 583
PfoI	TCCNGGA	1 cut(s)	586
PkrI	GCNGC	3 cut(s)	349, 382, 442
PleI	GAGTC	2 cut(s)	149, 394
PpsI	GAGTC	2 cut(s)	149, 394
Psp124BI	GAGCTC	1 cut(s)	489
Psp6I	CCWGG	1 cut(s)	586
PspGI	CCWGG	1 cut(s)	586
PspN4I	GGNNCC	1 cut(s)	204
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SacI	GAGCTC	1 cut(s)	489
SapI	GCTCTTC	2 cut(s)	344, 414
SaqAI	TTAA	4 cut(s)	224, 476, 522, 572
SatI	GCNGC	3 cut(s)	348, 381, 441
Sau3AI	GATC	2 cut(s)	210, 465
SchI	GAGTC	2 cut(s)	149, 395
ScrFI	CCNGG	1 cut(s)	588
SduI	GDGCHC	1 cut(s)	489
SfaNI	GCATC	3 cut(s)	173, 338, 586
SfuI	TTCGAA	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	513
SmoI	CTYRAG	1 cut(s)	513
Sse9I	AATT	3 cut(s)	20, 221, 321
SspMI	CTAG	2 cut(s)	119, 414
SstI	GAGCTC	1 cut(s)	489
StyD4I	CCNGG	1 cut(s)	586
StyI	CCWWGG	2 cut(s)	144, 502
TaaI	ACNGT	1 cut(s)	570
TaqI	TCGA	5 cut(s)	17, 78, 191, 209, 530
TasI	AATT	3 cut(s)	20, 221, 321
TatI	WGTACW	1 cut(s)	186
TfiI	GAWTC	6 cut(s)	52, 58, 72, 193, 352, 583
Tru1I	TTAA	4 cut(s)	224, 476, 522, 572
Tru9I	TTAA	4 cut(s)	224, 476, 522, 572
TscAI	CASTG	2 cut(s)	475, 496
TseFI	GTSAC	3 cut(s)	106, 313, 470
TseI	GCWGC	3 cut(s)	347, 380, 440
Tsp45I	GTSAC	3 cut(s)	106, 313, 470
TspDTI	ATGAA	2 cut(s)	64, 596
TspGWI	ACGGA	2 cut(s)	84, 223
TspRI	CASTG	2 cut(s)	475, 496
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	2 cut(s)	119, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.