Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007424

Physical Location & Seq

Genomic Coordinates Forward (+)

4157485 .. 4158071

Gene Structure 587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g04870.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGATGTTATGAGGGAAGAGCTTCCCGACACATTAACTGCTGTTCGTTTATCCGGAATGGAGATTAGTGACCTCACTATGGAGCTCAGCGATCTTGGACAGGAAATTACACAAGGCGTTAGAAGTTCCACTCGAGCTGTTCGCGTGGCGGAGGAGAGGTTGCGCCGCTTGAAAAACATGGCTCCATCAGCATCGGTGCAGGTAGTAAGTCAGAAAACTGAGGTGCCAGGGCCCATTTTGGCTAAAACTGCAAGAGGCATACGGGAGGGGATCCTGAATGGTCGTGCTCTATGGCAAATGTTTTTCACTCTTACCCGGTTTTCTAGGTTAGCACTTAACTATTTAACAAATCGAACTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

13.49

Weight (kDa)

10.43

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09995 AT5G09995 AT5G09995
fragaria_vesca	FvH4_1g22170 FvH4_1g22170 FvH4_1g22170
malus_domestica	MD01G1018800.v1.1 MD15G1333500.v1.1
prunus_persica	Prupe.6G174000_v2.0.a1 Prupe.6G174000_v2.0.a1 Prupe.6G174000_v2.0.a1
pyrus_communis	pycom01g04870 pycom15g29200
rosa_chinensis	RchiOBHm_Chr2g0116241
rosa_laevigata	RLG00000018250
rosa_multiflora	Rmu_sc0003499.1_g000013 Rmu_sc0004888.1_g000063
rosa_roxburghii	Rroxscaffold_2G00127400
rosa_rugosa	Rorug02G0205100 Rorug02G0205200
rosa_samantha	Rh2AG260700 Rh2BG271800 Rh2CG266900 Rh2DG268900
rosa_wichuraiana	Rw2G020440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	190
AccB1I	GGYRCC	1 cut(s)	223
AccII	CGCG	1 cut(s)	144
AccIII	TCCGGA	1 cut(s)	53
AciI	CCGC	2 cut(s)	149, 166
AclWI	GGATC	2 cut(s)	265, 278
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgsI	TTSAA	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	3 cut(s)	22, 85, 137
AluI	AGCT	3 cut(s)	22, 85, 137
Alw21I	GWGCWC	2 cut(s)	87, 289
AlwI	GGATC	2 cut(s)	265, 278
Ama87I	CYCGRG	1 cut(s)	132
Aor13HI	TCCGGA	1 cut(s)	53
AoxI	GGCC	1 cut(s)	230
ApaI	GGGCCC	1 cut(s)	234
Asp700I	GAANNNNTTC	1 cut(s)	21
AspLEI	GCGC	1 cut(s)	165
AspS9I	GGNCC	2 cut(s)	230, 231
AsuC2I	CCSGG	1 cut(s)	316
AvaI	CYCGRG	1 cut(s)	132
BaeGI	GKGCMC	1 cut(s)	234
BamHI	GGATCC	1 cut(s)	270
BanI	GGYRCC	1 cut(s)	223
BanII	GRGCYC	2 cut(s)	87, 234
Bbv12I	GWGCWC	2 cut(s)	87, 289
BccI	CCATC	1 cut(s)	193
BciT130I	CCWGG	1 cut(s)	228
BcnI	CCSGG	1 cut(s)	316
BfaI	CTAG	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	190
BisI	GCNGC	1 cut(s)	166
BlpI	GCTNAGC	1 cut(s)	86
BlsI	GCNGC	1 cut(s)	167
Bme1390I	CCNGG	2 cut(s)	228, 316
BmeT110I	CYCGRG	1 cut(s)	132
BmgT120I	GGNCC	2 cut(s)	230, 231
BmiI	GGNNCC	4 cut(s)	183, 225, 232, 272
BmrFI	CCNGG	2 cut(s)	228, 316
BmsI	GCATC	1 cut(s)	200
Bpu1102I	GCTNAGC	1 cut(s)	86
BpuMI	CCSGG	1 cut(s)	316
BsaJI	CCNNGG	1 cut(s)	227
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
BseAI	TCCGGA	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	227
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseMII	CTCAG	2 cut(s)	100, 210
BseRI	GAGGAG	1 cut(s)	167
BseSI	GKGCMC	1 cut(s)	234
BsgI	GTGCAG	1 cut(s)	218
Bsh1236I	CGCG	1 cut(s)	144
BshFI	GGCC	1 cut(s)	232
BshNI	GGYRCC	1 cut(s)	223
BsiHKAI	GWGCWC	2 cut(s)	87, 289
BsiHKCI	CYCGRG	1 cut(s)	132
BsiSI	CCGG	2 cut(s)	54, 316
BslI	CCNNNNNNNGG	1 cut(s)	79
BsnI	GGCC	1 cut(s)	232
BsoBI	CYCGRG	1 cut(s)	132
Bsp120I	GGGCCC	1 cut(s)	230
Bsp1286I	GDGCHC	3 cut(s)	87, 234, 289
Bsp13I	TCCGGA	1 cut(s)	53
Bsp143I	GATC	2 cut(s)	91, 270
Bsp1720I	GCTNAGC	1 cut(s)	86
BspACI	CCGC	2 cut(s)	149, 166
BspANI	GGCC	1 cut(s)	232
BspCNI	CTCAG	2 cut(s)	99, 211
BspEI	TCCGGA	1 cut(s)	53
BspFNI	CGCG	1 cut(s)	144
BspLI	GGNNCC	4 cut(s)	183, 225, 232, 272
BspMI	ACCTGC	1 cut(s)	190
BspPI	GGATC	2 cut(s)	265, 278
BspQI	GCTCTTC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	227
BssMI	GATC	2 cut(s)	91, 270
Bst2UI	CCWGG	1 cut(s)	228
Bst6I	CTCTTC	1 cut(s)	12
BstDEI	CTNAG	3 cut(s)	86, 219, 357
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	165
BstKTI	GATC	2 cut(s)	94, 273
BstMBI	GATC	2 cut(s)	91, 270
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 248
BstNI	CCWGG	1 cut(s)	228
BstSCI	CCNGG	2 cut(s)	226, 314
BstSLI	GKGCMC	1 cut(s)	234
BstUI	CGCG	1 cut(s)	144
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	10
BveI	ACCTGC	1 cut(s)	190
CfoI	GCGC	1 cut(s)	165
Cfr13I	GGNCC	2 cut(s)	230, 231
CviAII	CATG	1 cut(s)	178
CviJI	RGCY	6 cut(s)	22, 85, 137, 182, 232, 242
CviKI_1	RGCY	6 cut(s)	22, 85, 137, 182, 232, 242
DdeI	CTNAG	3 cut(s)	86, 219, 357
DpnI	GATC	2 cut(s)	93, 272
DpnII	GATC	2 cut(s)	91, 270
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
EciI	GGCGGA	1 cut(s)	164
Ecl136II	GAGCTC	1 cut(s)	85
Eco24I	GRGCYC	2 cut(s)	87, 234
Eco53kI	GAGCTC	1 cut(s)	85
Eco88I	CYCGRG	1 cut(s)	132
EcoICRI	GAGCTC	1 cut(s)	85
EcoO109I	RGGNCCY	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	226
EcoT38I	GRGCYC	2 cut(s)	87, 234
FaeI	CATG	1 cut(s)	181
FaiI	YATR	5 cut(s)	11, 80, 179, 260, 292
FatI	CATG	1 cut(s)	177
Fnu4HI	GCNGC	1 cut(s)	166
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	2 cut(s)	87, 234
Fsp4HI	GCNGC	1 cut(s)	166
FspBI	CTAG	1 cut(s)	324
GlaI	GCGC	1 cut(s)	164
GluI	GCNGC	1 cut(s)	166
HaeIII	GGCC	1 cut(s)	232
HapII	CCGG	2 cut(s)	54, 316
HhaI	GCGC	1 cut(s)	165
Hin1II	CATG	1 cut(s)	181
Hin6I	GCGC	1 cut(s)	163
HinP1I	GCGC	1 cut(s)	163
HpaII	CCGG	2 cut(s)	54, 316
Hpy188I	TCNGA	1 cut(s)	213
Hpy188III	TCNNGA	3 cut(s)	26, 54, 274
HpyCH4V	TGCA	2 cut(s)	199, 251
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 248
HpyF3I	CTNAG	3 cut(s)	86, 219, 357
Hsp92II	CATG	1 cut(s)	181
HspAI	GCGC	1 cut(s)	163
Kpn2I	TCCGGA	1 cut(s)	53
Kzo9I	GATC	2 cut(s)	91, 270
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	2 cut(s)	82, 187
LpnPI	CCDG	7 cut(s)	67, 86, 185, 213, 240, 287, 329
LweI	GCATC	1 cut(s)	200
MaeI	CTAG	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	2 cut(s)	93, 272
MboI	GATC	2 cut(s)	91, 270
MboII	GAAGA	1 cut(s)	29
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	3 cut(s)	87, 234, 289
MluCI	AATT	1 cut(s)	105
MnlI	CCTC	7 cut(s)	6, 83, 145, 150, 214, 248, 259
MroI	TCCGGA	1 cut(s)	53
MroXI	GAANNNNTTC	1 cut(s)	21
MseI	TTAA	3 cut(s)	35, 336, 344
MspI	CCGG	2 cut(s)	54, 316
MspR9I	CCNGG	2 cut(s)	228, 316
MvaI	CCWGG	1 cut(s)	228
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	2 cut(s)	188, 248
NciI	CCSGG	1 cut(s)	316
NdeII	GATC	2 cut(s)	91, 270
NlaIII	CATG	1 cut(s)	181
NlaIV	GGNNCC	4 cut(s)	183, 225, 232, 272
NmuCI	GTSAC	1 cut(s)	68
PaeR7I	CTCGAG	1 cut(s)	132
PciSI	GCTCTTC	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	21
PkrI	GCNGC	1 cut(s)	167
Psp124BI	GAGCTC	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	4 cut(s)	183, 225, 232, 272
PspOMI	GGGCCC	1 cut(s)	230
PspPI	GGNCC	2 cut(s)	230, 231
PspXI	VCTCGAGB	1 cut(s)	132
PsuI	RGATCY	1 cut(s)	270
SacI	GAGCTC	1 cut(s)	87
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	3 cut(s)	35, 336, 344
SatI	GCNGC	1 cut(s)	166
Sau3AI	GATC	2 cut(s)	91, 270
Sau96I	GGNCC	2 cut(s)	230, 231
ScrFI	CCNGG	2 cut(s)	228, 316
SduI	GDGCHC	3 cut(s)	87, 234, 289
SetI	ASST	8 cut(s)	24, 75, 87, 139, 161, 204, 225, 329
SfaNI	GCATC	1 cut(s)	200
Sfr274I	CTCGAG	1 cut(s)	132
SlaI	CTCGAG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	132
SmoI	CTYRAG	1 cut(s)	132
Sse9I	AATT	1 cut(s)	105
SsiI	CCGC	2 cut(s)	149, 166
SspMI	CTAG	1 cut(s)	324
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	2 cut(s)	226, 314
TaqI	TCGA	2 cut(s)	133, 352
TasI	AATT	1 cut(s)	105
TauI	GCSGC	1 cut(s)	168
Tru1I	TTAA	3 cut(s)	35, 336, 344
Tru9I	TTAA	3 cut(s)	35, 336, 344
TseFI	GTSAC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	68
XhoI	CTCGAG	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	21
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.