RLG00000018250

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0007424
Physical Location & Seq
Forward (+)
27577307 .. 27578762
1456 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018250

Sequence Viewer

Length: 750 bp
ATGTCGTTTGCTCTGAAATTGAATCTCTCAAACCCTAGAATCAACCCCAACTCCAACTTCGGCGGCTTCGCCGGTACCGCCCTTAATCCCCACCGTCTCCCCTACCATCTCAGACTCCCGGCATGGCGGCTCAACTCCGTTTCCGTACAGTCAGAGTACGTTAACGGAGCTTCAGAGCCGTCAATTTCATCGCATTACACAGAGAGCATCGGAACCCCATCACCATCGTCCCACCTTATTCAGTGGAACCTCACCCAACGACACGTCGTCGTCCTCAATGTCGTTGCTTGCGCTGCGGCGGTTTCTGCAACGTGGCTCTTCTGCTCTGCAATTCCAACGCTTCTGGCTTTCAAGAGAGCAGCTGATTCACTTGCAAAGCTGATGGATGTTATGAGGGAAGAGCTTCCCGATACAATGGCGGCTGTTCGCTTATCCGGGATGGAGATCAGTGACCTAACCATGGAGCTCAGTGATCTTGGCCAGGAGATTACACAAGGTGTTAGGAGTTCTACTCGAGCTGTTCGTGTGGCCGAGGACAGGTTGCGCCGCTTGACAAACATGGCTCCTACAGCATCCGTGCAGGAAGTAGCAAGTCCGAAAAGTGAGGTGCCAGGGCCACCTTTGGCTACAACTGCAAGAAGCATACGAGAGGGAGTTGTGAAGGGTCGTGCTCTCTGGCAAATGTTTTTCACCATCACCCAGTTTTCTGGGTTGGCACTCAAATTTTTTATCAGGCGGAAGAAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

250

Amino Acids

27.34

Weight (kDa)

10.07

Isoelectric Point (pI)

47.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 74
AccB1I GGYRCC 2 cut(s) 74, 607
AciI CCGC 8 cut(s) 63, 78, 127, 296, 299, 419, 547, 736
AcoI YGGCCR 2 cut(s) 478, 528
AcsI RAATTY 1 cut(s) 722
AcuI CTGAAG 1 cut(s) 156
AdeI CACNNNGTG 1 cut(s) 497
AfaI GTAC 3 cut(s) 76, 147, 158
AfiI CCNNNNNNNGG 2 cut(s) 460, 537
AflIII ACRYGT 1 cut(s) 262
AgsI TTSAA 2 cut(s) 22, 352
AhdI GACNNNNNGTC 1 cut(s) 266
AjiI CACGTC 1 cut(s) 265
AjnI CCWGG 2 cut(s) 480, 610
AjuI GAANNNNNNNTTGG 2 cut(s) 41, 73
AluBI AGCT 6 cut(s) 170, 362, 379, 403, 466, 518
AluI AGCT 6 cut(s) 170, 362, 379, 403, 466, 518
Alw21I GWGCWC 2 cut(s) 468, 673
Alw26I GTCTC 1 cut(s) 101
Ama87I CYCGRG 1 cut(s) 513
AoxI GGCC 3 cut(s) 478, 528, 614
ApeKI GCWGC 2 cut(s) 293, 359
ApoI RAATTY 1 cut(s) 722
Asp700I GAANNNNTTC 1 cut(s) 402
Asp718I GGTACC 1 cut(s) 74
AspLEI GCGC 2 cut(s) 293, 546
AspS9I GGNCC 1 cut(s) 614
AsuC2I CCSGG 2 cut(s) 119, 436
AsuHPI GGTGA 4 cut(s) 213, 244, 682, 688
AvaI CYCGRG 1 cut(s) 513
BalI TGGCCA 1 cut(s) 480
BanI GGYRCC 2 cut(s) 74, 607
BanII GRGCYC 1 cut(s) 468
Bbv12I GWGCWC 2 cut(s) 468, 673
BbvI GCAGC 2 cut(s) 280, 371
BccI CCATC 6 cut(s) 114, 226, 232, 376, 433, 701
BceAI ACGGC 1 cut(s) 163
BciT130I CCWGG 2 cut(s) 482, 612
BcnI CCSGG 2 cut(s) 119, 436
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 1 cut(s) 36
BfmI CTRYAG 1 cut(s) 567
BisI GCNGC 7 cut(s) 64, 128, 294, 297, 360, 420, 547
BlsI GCNGC 7 cut(s) 65, 129, 295, 298, 361, 421, 548
Bme1390I CCNGG 4 cut(s) 119, 436, 482, 612
BmeRI GACNNNNNGTC 1 cut(s) 266
BmeT110I CYCGRG 1 cut(s) 513
BmgBI CACGTC 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 614
BmiI GGNNCC 5 cut(s) 76, 214, 248, 564, 609
BmrFI CCNGG 4 cut(s) 119, 436, 482, 612
BmrI ACTGGG 1 cut(s) 694
BmsI GCATC 2 cut(s) 216, 581
BmuI ACTGGG 1 cut(s) 694
BplI GAGNNNNNCTC 2 cut(s) 496, 528
BpuMI CCSGG 2 cut(s) 119, 436
BsaBI GATNNNNATC 1 cut(s) 443
BsaJI CCNNGG 3 cut(s) 459, 531, 611
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 2 cut(s) 460, 537
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 700
Bse8I GATNNNNATC 1 cut(s) 443
BseBI CCWGG 2 cut(s) 482, 612
BseDI CCNNGG 3 cut(s) 459, 531, 611
BseGI GGATG 3 cut(s) 391, 444, 572
BseJI GATNNNNATC 1 cut(s) 443
BseLI CCNNNNNNNGG 2 cut(s) 460, 537
BseMII CTCAG 2 cut(s) 124, 481
BseNI ACTGG 1 cut(s) 700
BseXI GCAGC 2 cut(s) 280, 371
BsgI GTGCAG 1 cut(s) 599
BshFI GGCC 3 cut(s) 480, 530, 616
BshNI GGYRCC 2 cut(s) 74, 607
BsiHKAI GWGCWC 2 cut(s) 468, 673
BsiHKCI CYCGRG 1 cut(s) 513
BsiSI CCGG 3 cut(s) 72, 119, 435
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 2 cut(s) 460, 537
BsmAI GTCTC 1 cut(s) 101
BsmBI CGTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 214
BsnI GGCC 3 cut(s) 480, 530, 616
BsoBI CYCGRG 1 cut(s) 513
Bsp1286I GDGCHC 2 cut(s) 468, 673
Bsp143I GATC 2 cut(s) 444, 472
Bsp19I CCATGG 1 cut(s) 459
BspACI CCGC 8 cut(s) 63, 78, 127, 296, 299, 419, 547, 736
BspANI GGCC 3 cut(s) 480, 530, 616
BspCNI CTCAG 2 cut(s) 123, 480
BspLI GGNNCC 5 cut(s) 76, 214, 248, 564, 609
BspQI GCTCTTC 2 cut(s) 323, 393
BspT107I GGYRCC 2 cut(s) 74, 607
BsrFI RCCGGY 1 cut(s) 71
BsrI ACTGG 1 cut(s) 700
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 3 cut(s) 459, 531, 611
BssMI GATC 2 cut(s) 444, 472
BssT1I CCWWGG 1 cut(s) 459
Bst2UI CCWGG 2 cut(s) 482, 612
Bst4CI ACNGT 2 cut(s) 95, 150
Bst6I CTCTTC 2 cut(s) 323, 393
BstC8I GCNNGC 1 cut(s) 289
BstDEI CTNAG 2 cut(s) 110, 467
BstDSI CCRYGG 1 cut(s) 459
BstF5I GGATG 3 cut(s) 391, 444, 572
BstHHI GCGC 2 cut(s) 293, 546
BstKTI GATC 2 cut(s) 447, 475
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 2 cut(s) 444, 472
BstMWI GCNNNNNNNGC 6 cut(s) 77, 293, 305, 569, 632, 742
BstNI CCWGG 2 cut(s) 482, 612
BstSCI CCNGG 4 cut(s) 117, 434, 480, 610
BstSFI CTRYAG 1 cut(s) 567
BstV1I GCAGC 2 cut(s) 280, 371
BstXI CCANNNNNNTGG 1 cut(s) 707
BsuRI GGCC 3 cut(s) 480, 530, 616
BtgI CCRYGG 1 cut(s) 459
BtgZI GCGATG 1 cut(s) 174
BtrI CACGTC 1 cut(s) 265
BtsCI GGATG 3 cut(s) 391, 444, 572
BtsIMutI CAGTG 3 cut(s) 248, 454, 475
Cac8I GCNNGC 1 cut(s) 289
CfoI GCGC 2 cut(s) 293, 546
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 614
Csp6I GTAC 3 cut(s) 75, 146, 157
CviAII CATG 3 cut(s) 123, 460, 559
CviQI GTAC 3 cut(s) 75, 146, 157
DdeI CTNAG 2 cut(s) 110, 467
DpnI GATC 2 cut(s) 446, 474
DpnII GATC 2 cut(s) 444, 472
DraIII CACNNNGTG 1 cut(s) 497
DriI GACNNNNNGTC 1 cut(s) 266
EaeI YGGCCR 2 cut(s) 478, 528
Eam1104I CTCTTC 2 cut(s) 323, 393
Eam1105I GACNNNNNGTC 1 cut(s) 266
EarI CTCTTC 2 cut(s) 323, 393
Ecl136II GAGCTC 1 cut(s) 466
Eco130I CCWWGG 1 cut(s) 459
Eco24I GRGCYC 1 cut(s) 468
Eco53kI GAGCTC 1 cut(s) 466
Eco57I CTGAAG 1 cut(s) 156
Eco88I CYCGRG 1 cut(s) 513
EcoICRI GAGCTC 1 cut(s) 466
EcoRII CCWGG 2 cut(s) 480, 610
EcoT14I CCWWGG 1 cut(s) 459
EcoT38I GRGCYC 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 459
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 3 cut(s) 126, 463, 562
FaiI YATR 5 cut(s) 124, 392, 461, 560, 644
FaqI GGGAC 1 cut(s) 214
FatI CATG 3 cut(s) 122, 459, 558
Fnu4HI GCNGC 7 cut(s) 64, 128, 294, 297, 360, 420, 547
FokI GGATG 3 cut(s) 398, 451, 559
FriOI GRGCYC 1 cut(s) 468
Fsp4HI GCNGC 7 cut(s) 64, 128, 294, 297, 360, 420, 547
FspBI CTAG 1 cut(s) 36
GlaI GCGC 2 cut(s) 292, 545
GluI GCNGC 7 cut(s) 64, 128, 294, 297, 360, 420, 547
HaeIII GGCC 3 cut(s) 480, 530, 616
HapII CCGG 3 cut(s) 72, 119, 435
HhaI GCGC 2 cut(s) 293, 546
Hin1II CATG 3 cut(s) 126, 463, 562
Hin6I GCGC 2 cut(s) 291, 544
HinP1I GCGC 2 cut(s) 291, 544
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 4 cut(s) 22, 39, 114, 365
HpaI GTTAAC 1 cut(s) 163
HpaII CCGG 3 cut(s) 72, 119, 435
HphI GGTGA 4 cut(s) 213, 244, 682, 688
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 6 cut(s) 15, 113, 154, 175, 212, 597
Hpy188III TCNNGA 2 cut(s) 352, 407
Hpy8I GTNNAC 1 cut(s) 163
Hpy99I CGWCG 2 cut(s) 269, 272
HpyAV CCTTC 1 cut(s) 655
HpyCH4III ACNGT 2 cut(s) 95, 150
HpyCH4IV ACGT 3 cut(s) 159, 264, 311
HpyCH4V TGCA 5 cut(s) 308, 329, 374, 580, 635
HpyF10VI GCNNNNNNNGC 6 cut(s) 77, 293, 305, 569, 632, 742
HpyF3I CTNAG 2 cut(s) 110, 467
HpySE526I ACGT 3 cut(s) 159, 264, 311
Hsp92II CATG 3 cut(s) 126, 463, 562
HspAI GCGC 2 cut(s) 291, 544
KpnI GGTACC 1 cut(s) 78
KspAI GTTAAC 1 cut(s) 163
Kzo9I GATC 2 cut(s) 444, 472
LguI GCTCTTC 2 cut(s) 323, 393
LmnI GCTCC 3 cut(s) 167, 463, 568
Lsp1109I GCAGC 2 cut(s) 280, 371
LweI GCATC 2 cut(s) 216, 581
MaeI CTAG 1 cut(s) 36
MaeII ACGT 3 cut(s) 159, 264, 311
MaeIII GTNAC 1 cut(s) 449
MalI GATC 2 cut(s) 446, 474
MboI GATC 2 cut(s) 444, 472
MboII GAAGA 2 cut(s) 310, 410
MhlI GDGCHC 2 cut(s) 468, 673
MlsI TGGCCA 1 cut(s) 480
MluCI AATT 4 cut(s) 17, 183, 330, 722
MluNI TGGCCA 1 cut(s) 480
MlyI GAGTC 1 cut(s) 108
MmeI TCCRAC 2 cut(s) 78, 359
MnlI CCTC 6 cut(s) 260, 284, 387, 526, 598, 643
Mox20I TGGCCA 1 cut(s) 480
MroXI GAANNNNTTC 1 cut(s) 402
MscI TGGCCA 1 cut(s) 480
MseI TTAA 2 cut(s) 84, 162
Msp20I TGGCCA 1 cut(s) 480
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 3 cut(s) 72, 119, 435
MspR9I CCNGG 4 cut(s) 119, 436, 482, 612
MvaI CCWGG 2 cut(s) 482, 612
MwoI GCNNNNNNNGC 6 cut(s) 77, 293, 305, 569, 632, 742
NciI CCSGG 2 cut(s) 119, 436
NcoI CCATGG 1 cut(s) 459
NdeII GATC 2 cut(s) 444, 472
NlaIII CATG 3 cut(s) 126, 463, 562
NlaIV GGNNCC 5 cut(s) 76, 214, 248, 564, 609
NmeAIII GCCGAG 1 cut(s) 556
NmuCI GTSAC 1 cut(s) 449
PaeR7I CTCGAG 1 cut(s) 513
PciSI GCTCTTC 2 cut(s) 323, 393
PcsI WCGNNNNNNNCGW 1 cut(s) 520
PdmI GAANNNNTTC 1 cut(s) 402
PfeI GAWTC 3 cut(s) 22, 39, 365
PfoI TCCNGGA 1 cut(s) 434
PkrI GCNGC 7 cut(s) 65, 129, 295, 298, 361, 421, 548
PleI GAGTC 1 cut(s) 108
PpsI GAGTC 1 cut(s) 108
Psp124BI GAGCTC 1 cut(s) 468
Psp6I CCWGG 2 cut(s) 480, 610
PspGI CCWGG 2 cut(s) 480, 610
PspN4I GGNNCC 5 cut(s) 76, 214, 248, 564, 609
PspPI GGNCC 1 cut(s) 614
PspXI VCTCGAGB 1 cut(s) 513
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 3 cut(s) 76, 147, 158
RsaNI GTAC 3 cut(s) 75, 146, 157
SacI GAGCTC 1 cut(s) 468
SapI GCTCTTC 2 cut(s) 323, 393
SaqAI TTAA 2 cut(s) 84, 162
SatI GCNGC 7 cut(s) 64, 128, 294, 297, 360, 420, 547
Sau3AI GATC 2 cut(s) 444, 472
Sau96I GGNCC 1 cut(s) 614
SchI GAGTC 1 cut(s) 108
ScrFI CCNGG 4 cut(s) 119, 436, 482, 612
SduI GDGCHC 2 cut(s) 468, 673
SfaNI GCATC 2 cut(s) 216, 581
SfcI CTRYAG 1 cut(s) 567
Sfr274I CTCGAG 1 cut(s) 513
SlaI CTCGAG 1 cut(s) 513
SmlI CTYRAG 1 cut(s) 513
SmoI CTYRAG 1 cut(s) 513
Sse9I AATT 4 cut(s) 17, 183, 330, 722
SsiI CCGC 8 cut(s) 63, 78, 127, 296, 299, 419, 547, 736
SspMI CTAG 1 cut(s) 36
SstI GAGCTC 1 cut(s) 468
StyD4I CCNGG 4 cut(s) 117, 434, 480, 610
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 2 cut(s) 95, 150
TaiI ACGT 3 cut(s) 162, 267, 314
TaqI TCGA 1 cut(s) 514
TasI AATT 4 cut(s) 17, 183, 330, 722
TauI GCSGC 5 cut(s) 66, 130, 299, 422, 549
TfiI GAWTC 3 cut(s) 22, 39, 365
Tru1I TTAA 2 cut(s) 84, 162
Tru9I TTAA 2 cut(s) 84, 162
TscAI CASTG 3 cut(s) 248, 454, 475
TseFI GTSAC 1 cut(s) 449
TseI GCWGC 2 cut(s) 293, 359
Tsp45I GTSAC 1 cut(s) 449
TspDTI ATGAA 1 cut(s) 177
TspGWI ACGGA 4 cut(s) 127, 133, 180, 565
TspRI CASTG 3 cut(s) 248, 454, 475
XapI RAATTY 1 cut(s) 722
XhoI CTCGAG 1 cut(s) 513
XmnI GAANNNNTTC 1 cut(s) 402
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.