Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007424

Physical Location & Seq

Genomic Coordinates Reverse (-)

17865517 .. 17867306

Gene Structure 1790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G174000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGTTGTCTGGTCTGAAATTGCAGGTGAAACCCACAATCAAGCAAAGCTACAGCTTCCTGGGGAGCAAAAAGCCTGGCCGTCTGCCCTACCATCTCAGACTTCCGGCTCGACGGGTGAACTCGGTGTCCGTACGGTCTGAGTGTGTTAACGAAGCATCTCAGCCGTCAGTTTCATCGCACTACACGGAAAGTGTGGGATCTCCATTACCTTCGGCTTCACTTCTTCAGCTCTCCCACTGGAACCTCACCCACCGCAACATCGTCTTGCTCAATGTCGTTGCTTGCGCCGCAGCAGTTTCTGCGACGTGGCTCTTCTGCTCTGCAATCCCCGCGCTTCTGGCTTTCAAGAGAGCAGCTCAATCACTGGAAAAGCTGATGGATGTTATGAGGGAAGAGCTTCCTGACACAATGGCTGCTGTTCGTTTATCCGGGATGGAGATCAGTGACCTCACTATGGAGCTCAGTGATCTTGGCCAGGAAATTACACAGGGTGTTAGAAGTTCCACTCGAGCTGTTCGCGTGGCAGAGGAGAGGTTGCGCCGCTTGACAAACATGGCTCCATCAGCATCGGTGCAGGAGGTAACCAGTCCGAAAACTGAGGTTCCAGGGCCAGTTTTGGCTAGAACTGCAAGAGGCATACGGGAGGGGATTGTGAAGGGCCGTGCTCTGTGGCAAATGTTTTTCACTATCACCCGGTTCTCTAGGCTGGCACTCAACTATATAACCAGTCGAAATAAGCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

27.29

Weight (kDa)

10.47

Isoelectric Point (pI)

59.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09995 AT5G09995 AT5G09995
fragaria_vesca	FvH4_1g22170 FvH4_1g22170 FvH4_1g22170
malus_domestica	MD01G1018800.v1.1 MD15G1333500.v1.1
prunus_persica	Prupe.6G174000_v2.0.a1 Prupe.6G174000_v2.0.a1 Prupe.6G174000_v2.0.a1
pyrus_communis	pycom01g04870 pycom15g29200
rosa_chinensis	RchiOBHm_Chr2g0116241
rosa_laevigata	RLG00000018250
rosa_multiflora	Rmu_sc0003499.1_g000013 Rmu_sc0004888.1_g000063
rosa_roxburghii	Rroxscaffold_2G00127400
rosa_rugosa	Rorug02G0205100 Rorug02G0205200
rosa_samantha	Rh2AG260700 Rh2BG271800 Rh2CG266900 Rh2DG268900
rosa_wichuraiana	Rw2G020440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	13
Acc36I	ACCTGC	1 cut(s)	13
AccII	CGCG	2 cut(s)	332, 519
AciI	CCGC	5 cut(s)	253, 288, 330, 541, 739
AclWI	GGATC	1 cut(s)	205
AcoI	YGGCCR	2 cut(s)	76, 472
AcuI	CTGAAG	1 cut(s)	209
AdeI	CACNNNGTG	1 cut(s)	491
AfaI	GTAC	1 cut(s)	132
AfiI	CCNNNNNNNGG	1 cut(s)	454
AgsI	TTSAA	1 cut(s)	346
AjiI	CACGTC	1 cut(s)	306
AjnI	CCWGG	4 cut(s)	57, 73, 474, 604
AloI	GAACNNNNNNTCC	2 cut(s)	110, 142
AluBI	AGCT	8 cut(s)	48, 54, 229, 356, 373, 397, 460, 512
AluI	AGCT	8 cut(s)	48, 54, 229, 356, 373, 397, 460, 512
Alw21I	GWGCWC	2 cut(s)	462, 667
AlwI	GGATC	1 cut(s)	205
AlwNI	CAGNNNCTG	1 cut(s)	299
Ama87I	CYCGRG	1 cut(s)	507
AoxI	GGCC	4 cut(s)	76, 472, 608, 658
ApeKI	GCWGC	3 cut(s)	290, 353, 413
Asp700I	GAANNNNTTC	1 cut(s)	396
AspLEI	GCGC	3 cut(s)	287, 334, 540
AspS9I	GGNCC	2 cut(s)	608, 658
AsuC2I	CCSGG	2 cut(s)	430, 694
AsuHPI	GGTGA	4 cut(s)	37, 127, 238, 682
AvaI	CYCGRG	1 cut(s)	507
BalI	TGGCCA	1 cut(s)	474
BanII	GRGCYC	1 cut(s)	462
Bbv12I	GWGCWC	2 cut(s)	462, 667
BbvI	GCAGC	3 cut(s)	302, 365, 400
BccI	CCATC	4 cut(s)	99, 370, 427, 568
BceAI	ACGGC	3 cut(s)	63, 148, 645
BciT130I	CCWGG	4 cut(s)	59, 75, 476, 606
BcnI	CCSGG	2 cut(s)	430, 694
BfaI	CTAG	2 cut(s)	621, 702
BfmI	CTRYAG	1 cut(s)	49
BfuAI	ACCTGC	1 cut(s)	13
BisI	GCNGC	5 cut(s)	288, 291, 354, 414, 541
BlsI	GCNGC	5 cut(s)	289, 292, 355, 415, 542
Bme1390I	CCNGG	6 cut(s)	59, 75, 430, 476, 606, 694
BmeT110I	CYCGRG	1 cut(s)	507
BmgBI	CACGTC	1 cut(s)	306
BmgT120I	GGNCC	2 cut(s)	608, 658
BmiI	GGNNCC	3 cut(s)	242, 558, 603
BmrFI	CCNGG	6 cut(s)	59, 75, 430, 476, 606, 694
BmsI	GCATC	2 cut(s)	164, 575
BplI	GAGNNNNNCTC	2 cut(s)	340, 372
BpuMI	CCSGG	2 cut(s)	430, 694
BsaBI	GATNNNNATC	1 cut(s)	437
BsaJI	CCNNGG	2 cut(s)	58, 605
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
Bse1I	ACTGG	5 cut(s)	242, 369, 585, 611, 726
Bse8I	GATNNNNATC	1 cut(s)	437
BseBI	CCWGG	4 cut(s)	59, 75, 476, 606
BseDI	CCNNGG	2 cut(s)	58, 605
BseGI	GGATG	2 cut(s)	385, 438
BseJI	GATNNNNATC	1 cut(s)	437
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseMII	CTCAG	5 cut(s)	109, 129, 173, 475, 588
BseNI	ACTGG	5 cut(s)	242, 369, 585, 611, 726
BseRI	GAGGAG	1 cut(s)	542
BseXI	GCAGC	3 cut(s)	302, 365, 400
BsgI	GTGCAG	1 cut(s)	593
Bsh1236I	CGCG	2 cut(s)	332, 519
BshFI	GGCC	4 cut(s)	78, 474, 610, 660
BsiHKAI	GWGCWC	2 cut(s)	462, 667
BsiHKCI	CYCGRG	1 cut(s)	507
BsiSI	CCGG	3 cut(s)	104, 429, 694
BsiWI	CGTACG	1 cut(s)	130
BslI	CCNNNNNNNGG	1 cut(s)	454
BsnI	GGCC	4 cut(s)	78, 474, 610, 660
BsoBI	CYCGRG	1 cut(s)	507
Bsp1286I	GDGCHC	2 cut(s)	462, 667
Bsp143I	GATC	3 cut(s)	197, 438, 466
BspACI	CCGC	5 cut(s)	253, 288, 330, 541, 739
BspANI	GGCC	4 cut(s)	78, 474, 610, 660
BspCNI	CTCAG	5 cut(s)	108, 130, 172, 474, 589
BspFNI	CGCG	2 cut(s)	332, 519
BspLI	GGNNCC	3 cut(s)	242, 558, 603
BspMI	ACCTGC	1 cut(s)	13
BspPI	GGATC	1 cut(s)	205
BspQI	GCTCTTC	2 cut(s)	317, 387
BsrI	ACTGG	5 cut(s)	242, 369, 585, 611, 726
BssECI	CCNNGG	2 cut(s)	58, 605
BssMI	GATC	3 cut(s)	197, 438, 466
Bst2UI	CCWGG	4 cut(s)	59, 75, 476, 606
Bst4CI	ACNGT	1 cut(s)	135
Bst6I	CTCTTC	2 cut(s)	317, 387
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstC8I	GCNNGC	2 cut(s)	283, 708
BstDEI	CTNAG	5 cut(s)	95, 138, 159, 461, 597
BstEII	GGTNACC	1 cut(s)	580
BstF5I	GGATG	2 cut(s)	385, 438
BstFNI	CGCG	2 cut(s)	332, 519
BstHHI	GCGC	3 cut(s)	287, 334, 540
BstKTI	GATC	3 cut(s)	200, 441, 469
BstMBI	GATC	3 cut(s)	197, 438, 466
BstMWI	GCNNNNNNNGC	6 cut(s)	287, 299, 329, 338, 563, 626
BstNI	CCWGG	4 cut(s)	59, 75, 476, 606
BstPI	GGTNACC	1 cut(s)	580
BstSCI	CCNGG	6 cut(s)	57, 73, 428, 474, 604, 692
BstSFI	CTRYAG	1 cut(s)	49
BstUI	CGCG	2 cut(s)	332, 519
BstV1I	GCAGC	3 cut(s)	302, 365, 400
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
BsuRI	GGCC	4 cut(s)	78, 474, 610, 660
BtgZI	GCGATG	1 cut(s)	159
BtrI	CACGTC	1 cut(s)	306
BtsCI	GGATG	2 cut(s)	385, 438
BtsIMutI	CAGTG	4 cut(s)	235, 362, 448, 469
BveI	ACCTGC	1 cut(s)	13
Cac8I	GCNNGC	2 cut(s)	283, 708
CaiI	CAGNNNCTG	1 cut(s)	299
CfoI	GCGC	3 cut(s)	287, 334, 540
Cfr13I	GGNCC	2 cut(s)	608, 658
Csp6I	GTAC	1 cut(s)	131
CviAII	CATG	1 cut(s)	553
CviQI	GTAC	1 cut(s)	131
DdeI	CTNAG	5 cut(s)	95, 138, 159, 461, 597
DpnI	GATC	3 cut(s)	199, 440, 468
DpnII	GATC	3 cut(s)	197, 438, 466
DraIII	CACNNNGTG	1 cut(s)	491
EaeI	YGGCCR	2 cut(s)	76, 472
Eam1104I	CTCTTC	2 cut(s)	317, 387
EarI	CTCTTC	2 cut(s)	317, 387
Ecl136II	GAGCTC	1 cut(s)	460
Eco24I	GRGCYC	1 cut(s)	462
Eco53kI	GAGCTC	1 cut(s)	460
Eco57I	CTGAAG	1 cut(s)	209
Eco88I	CYCGRG	1 cut(s)	507
Eco91I	GGTNACC	1 cut(s)	580
EcoICRI	GAGCTC	1 cut(s)	460
EcoO65I	GGTNACC	1 cut(s)	580
EcoRII	CCWGG	4 cut(s)	57, 73, 474, 604
EcoT38I	GRGCYC	1 cut(s)	462
FaeI	CATG	1 cut(s)	556
FaiI	YATR	6 cut(s)	386, 455, 554, 638, 720, 722
FatI	CATG	1 cut(s)	552
FauI	CCCGC	1 cut(s)	337
Fnu4HI	GCNGC	5 cut(s)	288, 291, 354, 414, 541
FokI	GGATG	2 cut(s)	392, 445
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	5 cut(s)	288, 291, 354, 414, 541
FspBI	CTAG	2 cut(s)	621, 702
GlaI	GCGC	3 cut(s)	286, 333, 539
GluI	GCNGC	5 cut(s)	288, 291, 354, 414, 541
HaeIII	GGCC	4 cut(s)	78, 474, 610, 660
HapII	CCGG	3 cut(s)	104, 429, 694
HhaI	GCGC	3 cut(s)	287, 334, 540
Hin1II	CATG	1 cut(s)	556
Hin6I	GCGC	3 cut(s)	285, 332, 538
HinP1I	GCGC	3 cut(s)	285, 332, 538
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HpaI	GTTAAC	1 cut(s)	148
HpaII	CCGG	3 cut(s)	104, 429, 694
HphI	GGTGA	4 cut(s)	37, 127, 238, 682
Hpy166II	GTNNAC	2 cut(s)	118, 148
Hpy188I	TCNGA	4 cut(s)	15, 98, 139, 591
Hpy188III	TCNNGA	2 cut(s)	346, 401
Hpy8I	GTNNAC	2 cut(s)	118, 148
Hpy99I	CGWCG	2 cut(s)	114, 307
HpyAV	CCTTC	2 cut(s)	219, 649
HpyCH4III	ACNGT	1 cut(s)	135
HpyCH4IV	ACGT	1 cut(s)	305
HpyCH4V	TGCA	4 cut(s)	22, 323, 574, 629
HpyF10VI	GCNNNNNNNGC	6 cut(s)	287, 299, 329, 338, 563, 626
HpyF3I	CTNAG	5 cut(s)	95, 138, 159, 461, 597
HpySE526I	ACGT	1 cut(s)	305
Hsp92II	CATG	1 cut(s)	556
HspAI	GCGC	3 cut(s)	285, 332, 538
KspAI	GTTAAC	1 cut(s)	148
Kzo9I	GATC	3 cut(s)	197, 438, 466
LguI	GCTCTTC	2 cut(s)	317, 387
LmnI	GCTCC	3 cut(s)	63, 457, 562
Lsp1109I	GCAGC	3 cut(s)	302, 365, 400
LweI	GCATC	2 cut(s)	164, 575
MaeI	CTAG	2 cut(s)	621, 702
MaeII	ACGT	1 cut(s)	305
MaeIII	GTNAC	2 cut(s)	443, 580
MalI	GATC	3 cut(s)	199, 440, 468
MboI	GATC	3 cut(s)	197, 438, 466
MboII	GAAGA	3 cut(s)	215, 304, 404
MflI	RGATCY	1 cut(s)	197
MhlI	GDGCHC	2 cut(s)	462, 667
MlsI	TGGCCA	1 cut(s)	474
MluCI	AATT	2 cut(s)	17, 480
MluNI	TGGCCA	1 cut(s)	474
MnlI	CCTC	9 cut(s)	254, 381, 458, 520, 525, 571, 592, 626, 637
Mox20I	TGGCCA	1 cut(s)	474
MroXI	GAANNNNTTC	1 cut(s)	396
MscI	TGGCCA	1 cut(s)	474
MseI	TTAA	1 cut(s)	147
Msp20I	TGGCCA	1 cut(s)	474
MspI	CCGG	3 cut(s)	104, 429, 694
MspR9I	CCNGG	6 cut(s)	59, 75, 430, 476, 606, 694
MvaI	CCWGG	4 cut(s)	59, 75, 476, 606
MvnI	CGCG	2 cut(s)	332, 519
MwoI	GCNNNNNNNGC	6 cut(s)	287, 299, 329, 338, 563, 626
NciI	CCSGG	2 cut(s)	430, 694
NdeII	GATC	3 cut(s)	197, 438, 466
NlaIII	CATG	1 cut(s)	556
NlaIV	GGNNCC	3 cut(s)	242, 558, 603
NmuCI	GTSAC	1 cut(s)	443
PaeR7I	CTCGAG	1 cut(s)	507
PaqCI	CACCTGC	1 cut(s)	13
PciSI	GCTCTTC	2 cut(s)	317, 387
PdmI	GAANNNNTTC	1 cut(s)	396
Pfl23II	CGTACG	1 cut(s)	130
PfoI	TCCNGGA	1 cut(s)	428
PkrI	GCNGC	5 cut(s)	289, 292, 355, 415, 542
Psp124BI	GAGCTC	1 cut(s)	462
Psp6I	CCWGG	4 cut(s)	57, 73, 474, 604
PspEI	GGTNACC	1 cut(s)	580
PspGI	CCWGG	4 cut(s)	57, 73, 474, 604
PspLI	CGTACG	1 cut(s)	130
PspN4I	GGNNCC	3 cut(s)	242, 558, 603
PspPI	GGNCC	2 cut(s)	608, 658
PspXI	VCTCGAGB	1 cut(s)	507
PstNI	CAGNNNCTG	1 cut(s)	299
PsuI	RGATCY	1 cut(s)	197
RsaI	GTAC	1 cut(s)	132
RsaNI	GTAC	1 cut(s)	131
SacI	GAGCTC	1 cut(s)	462
SapI	GCTCTTC	2 cut(s)	317, 387
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	5 cut(s)	288, 291, 354, 414, 541
Sau3AI	GATC	3 cut(s)	197, 438, 466
Sau96I	GGNCC	2 cut(s)	608, 658
ScrFI	CCNGG	6 cut(s)	59, 75, 430, 476, 606, 694
SduI	GDGCHC	2 cut(s)	462, 667
SfaNI	GCATC	2 cut(s)	164, 575
SfcI	CTRYAG	1 cut(s)	49
Sfr274I	CTCGAG	1 cut(s)	507
SlaI	CTCGAG	1 cut(s)	507
SmlI	CTYRAG	1 cut(s)	507
SmoI	CTYRAG	1 cut(s)	507
Sse9I	AATT	2 cut(s)	17, 480
SsiI	CCGC	5 cut(s)	253, 288, 330, 541, 739
SspMI	CTAG	2 cut(s)	621, 702
SstI	GAGCTC	1 cut(s)	462
StyD4I	CCNGG	6 cut(s)	57, 73, 428, 474, 604, 692
TaaI	ACNGT	1 cut(s)	135
TaiI	ACGT	1 cut(s)	308
TaqI	TCGA	3 cut(s)	109, 508, 730
TasI	AATT	2 cut(s)	17, 480
TauI	GCSGC	2 cut(s)	290, 543
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	4 cut(s)	242, 369, 448, 469
TseFI	GTSAC	1 cut(s)	443
TseI	GCWGC	3 cut(s)	290, 353, 413
Tsp45I	GTSAC	1 cut(s)	443
TspDTI	ATGAA	1 cut(s)	162
TspGWI	ACGGA	2 cut(s)	118, 200
TspRI	CASTG	4 cut(s)	242, 369, 448, 469
XhoI	CTCGAG	1 cut(s)	507
XmnI	GAANNNNTTC	1 cut(s)	396
XspI	CTAG	2 cut(s)	621, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.