Rmu_sc0004888.1_g000063

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004888.1
OG0007424
Physical Location & Seq
Reverse (-)
307817 .. 308290
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004888.1_g000063.1.cds

Sequence Viewer

Length: 306 bp
atgaccaaatgtggtgtggtgaaggctttcaagagagcagctgattcacttgcaaagctgatggatgttatgagggaagagcttccggatacaatggcggctgttcgcttatccgggatggagatcagtgacctaaccatggagctcagtgatcttggtttggcattactatttctagactcttgttatgtccaggagattacacaaggtgttaggagttctactcgagctgttcgtgtggcggaggacaggttgcgccgcttgacaaacatggcccctacaggaagtagcaagtccgaaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.11

Weight (kDa)

7.77

Isoelectric Point (pI)

44.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 85
AciI CCGC 3 cut(s) 98, 242, 259
AdeI CACNNNGTG 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 1 cut(s) 31
AjnI CCWGG 1 cut(s) 192
AluBI AGCT 5 cut(s) 41, 58, 82, 145, 230
AluI AGCT 5 cut(s) 41, 58, 82, 145, 230
Alw21I GWGCWC 1 cut(s) 147
Ama87I CYCGRG 1 cut(s) 225
Aor13HI TCCGGA 1 cut(s) 85
AoxI GGCC 1 cut(s) 273
ApeKI GCWGC 1 cut(s) 38
Asp700I GAANNNNTTC 2 cut(s) 26, 81
AspLEI GCGC 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 274
AsuC2I CCSGG 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 31
AvaI CYCGRG 1 cut(s) 225
BanII GRGCYC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 50
BccI CCATC 2 cut(s) 55, 112
BciT130I CCWGG 1 cut(s) 194
BciVI GTATCC 1 cut(s) 82
BcnI CCSGG 1 cut(s) 115
BfaI CTAG 1 cut(s) 176
BfmI CTRYAG 1 cut(s) 279
BfuI GTATCC 1 cut(s) 82
BisI GCNGC 3 cut(s) 39, 99, 259
BlsI GCNGC 3 cut(s) 40, 100, 260
Bme1390I CCNGG 2 cut(s) 115, 194
BmeT110I CYCGRG 1 cut(s) 225
BmgT120I GGNCC 1 cut(s) 274
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 2 cut(s) 115, 194
BplI GAGNNNNNCTC 2 cut(s) 208, 240
BpuMI CCSGG 1 cut(s) 115
BsaBI GATNNNNATC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 138
BsaWI WCCGGW 1 cut(s) 85
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse8I GATNNNNATC 1 cut(s) 122
BseAI TCCGGA 1 cut(s) 85
BseBI CCWGG 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 2 cut(s) 70, 123
BseJI GATNNNNATC 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 160
BseXI GCAGC 1 cut(s) 50
BshFI GGCC 1 cut(s) 275
BsiHKAI GWGCWC 1 cut(s) 147
BsiHKCI CYCGRG 1 cut(s) 225
BsiSI CCGG 2 cut(s) 86, 114
BslI CCNNNNNNNGG 1 cut(s) 139
BsnI GGCC 1 cut(s) 275
BsoBI CYCGRG 1 cut(s) 225
Bsp1286I GDGCHC 1 cut(s) 147
Bsp13I TCCGGA 1 cut(s) 85
Bsp143I GATC 2 cut(s) 123, 151
Bsp19I CCATGG 1 cut(s) 138
BspACI CCGC 3 cut(s) 98, 242, 259
BspANI GGCC 1 cut(s) 275
BspCNI CTCAG 1 cut(s) 159
BspEI TCCGGA 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 276
BspQI GCTCTTC 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 2 cut(s) 123, 151
BssT1I CCWWGG 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 194
Bst6I CTCTTC 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 146
BstDSI CCRYGG 1 cut(s) 138
BstF5I GGATG 2 cut(s) 70, 123
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 2 cut(s) 126, 154
BstMBI GATC 2 cut(s) 123, 151
BstNI CCWGG 1 cut(s) 194
BstSCI CCNGG 2 cut(s) 113, 192
BstSFI CTRYAG 1 cut(s) 279
BstV1I GCAGC 1 cut(s) 50
BsuI GTATCC 1 cut(s) 82
BsuRI GGCC 1 cut(s) 275
BtgI CCRYGG 1 cut(s) 138
BtsCI GGATG 2 cut(s) 70, 123
BtsIMutI CAGTG 2 cut(s) 133, 154
CfoI GCGC 1 cut(s) 258
Cfr13I GGNCC 1 cut(s) 274
CviAII CATG 2 cut(s) 139, 271
CviJI RGCY 8 cut(s) 26, 41, 58, 82, 101, 145, 230, 275
CviKI_1 RGCY 8 cut(s) 26, 41, 58, 82, 101, 145, 230, 275
DdeI CTNAG 1 cut(s) 146
DpnI GATC 2 cut(s) 125, 153
DpnII GATC 2 cut(s) 123, 151
DraIII CACNNNGTG 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
EciI GGCGGA 1 cut(s) 257
Ecl136II GAGCTC 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 147
Eco53kI GAGCTC 1 cut(s) 145
Eco88I CYCGRG 1 cut(s) 225
EcoICRI GAGCTC 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 192
EcoT14I CCWWGG 1 cut(s) 138
EcoT38I GRGCYC 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 2 cut(s) 142, 274
FaiI YATR 4 cut(s) 71, 140, 189, 272
FatI CATG 2 cut(s) 138, 270
Fnu4HI GCNGC 3 cut(s) 39, 99, 259
FokI GGATG 2 cut(s) 77, 130
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 3 cut(s) 39, 99, 259
FspBI CTAG 1 cut(s) 176
GlaI GCGC 1 cut(s) 257
GluI GCNGC 3 cut(s) 39, 99, 259
HaeIII GGCC 1 cut(s) 275
HapII CCGG 2 cut(s) 86, 114
HhaI GCGC 1 cut(s) 258
Hin1II CATG 2 cut(s) 142, 274
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HinfI GANTC 2 cut(s) 44, 179
HpaII CCGG 2 cut(s) 86, 114
HphI GGTGA 1 cut(s) 31
Hpy188I TCNGA 1 cut(s) 298
Hpy188III TCNNGA 3 cut(s) 31, 86, 176
HpyAV CCTTC 1 cut(s) 16
HpyCH4V TGCA 1 cut(s) 53
HpyF3I CTNAG 1 cut(s) 146
Hsp92II CATG 2 cut(s) 142, 274
HspAI GCGC 1 cut(s) 256
Kpn2I TCCGGA 1 cut(s) 85
Kzo9I GATC 2 cut(s) 123, 151
LguI GCTCTTC 1 cut(s) 72
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 6 cut(s) 99, 127, 179, 206, 235, 267
Lsp1109I GCAGC 1 cut(s) 50
MaeI CTAG 1 cut(s) 176
MaeIII GTNAC 1 cut(s) 128
MalI GATC 2 cut(s) 125, 153
MboI GATC 2 cut(s) 123, 151
MboII GAAGA 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 147
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 2 cut(s) 66, 238
MroI TCCGGA 1 cut(s) 85
MroXI GAANNNNTTC 2 cut(s) 26, 81
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 2 cut(s) 86, 114
MspR9I CCNGG 2 cut(s) 115, 194
MvaI CCWGG 1 cut(s) 194
NciI CCSGG 1 cut(s) 115
NcoI CCATGG 1 cut(s) 138
NdeII GATC 2 cut(s) 123, 151
NlaIII CATG 2 cut(s) 142, 274
NlaIV GGNNCC 1 cut(s) 276
NmuCI GTSAC 1 cut(s) 128
PaeR7I CTCGAG 1 cut(s) 225
PciSI GCTCTTC 1 cut(s) 72
PcsI WCGNNNNNNNCGW 1 cut(s) 232
PdmI GAANNNNTTC 2 cut(s) 26, 81
PfeI GAWTC 1 cut(s) 44
PfoI TCCNGGA 2 cut(s) 113, 192
PkrI GCNGC 3 cut(s) 40, 100, 260
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
Psp124BI GAGCTC 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspN4I GGNNCC 1 cut(s) 276
PspPI GGNCC 1 cut(s) 274
PspXI VCTCGAGB 1 cut(s) 225
PvuII CAGCTG 1 cut(s) 41
SacI GAGCTC 1 cut(s) 147
SapI GCTCTTC 1 cut(s) 72
SatI GCNGC 3 cut(s) 39, 99, 259
Sau3AI GATC 2 cut(s) 123, 151
Sau96I GGNCC 1 cut(s) 274
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 2 cut(s) 115, 194
SduI GDGCHC 1 cut(s) 147
SetI ASST 8 cut(s) 43, 60, 84, 135, 147, 211, 232, 254
SfcI CTRYAG 1 cut(s) 279
Sfr274I CTCGAG 1 cut(s) 225
SlaI CTCGAG 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 225
SmoI CTYRAG 1 cut(s) 225
SsiI CCGC 3 cut(s) 98, 242, 259
SspMI CTAG 1 cut(s) 176
SstI GAGCTC 1 cut(s) 147
StyD4I CCNGG 2 cut(s) 113, 192
StyI CCWWGG 1 cut(s) 138
TaqI TCGA 1 cut(s) 226
TauI GCSGC 2 cut(s) 101, 261
TfiI GAWTC 1 cut(s) 44
TscAI CASTG 2 cut(s) 133, 154
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 1 cut(s) 38
Tsp45I GTSAC 1 cut(s) 128
TspRI CASTG 2 cut(s) 133, 154
XbaI TCTAGA 1 cut(s) 175
XcmI CCANNNNNNNNNTGG 1 cut(s) 13
XhoI CTCGAG 1 cut(s) 225
XmnI GAANNNNTTC 2 cut(s) 26, 81
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.