Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007424

Physical Location & Seq

Genomic Coordinates Reverse (-)

37060289 .. 37061976

Gene Structure 1688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1333500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGTTGGTGGGTGTGAAATTACAGCTGGCGTGGAAACCTAGGATTAACCAGAACGCAAACCAGAGCTTTGCGGGCAACATAAACCCTCGCCGTCTGCCCCACCATCTCAGGCTACCGCCTCGACGGCTCAGTTCAGTGTCCGTCCAGTCGCAGTATGTTAAAGAAGCATCTGGGCGGCCATTTTCATCTCATTACACTGAAACTGTCGGATCTCCATCACTTTCTCAGACTTCACTTCAGTGGAACCTCACCCACCGCCGCCTTTTCTTCCTCAATGTCGTTGCTTGCGCGGTAGCAGTTTCGGCGACATGTCTCTTCTTCTCTGCAATCCCCACCCTCCTGGCTTTCAAAAGGGCAGCTCAATCACTTGAAAAGCTGATGGATGTTATGAGGGAAGAGCTTCCCGACACGATGGCTGCTGTTCGCTTATCCGGGATGGAGATTAGTGACCTCACTATGGAGCTCAGTGATCTTGGCCATGAAATTACACAAGGCGTTAGAAGTTCCACTCGTGCTGTTCGTGTGGCGGAGGAGAGGTTGCGCGGCTTGACAAACATGGCTTCATCAGCACGGGTGCAGGTAGTAAGTCAGAAAACTGAGGTGCCAGGGCCCGTTTTAGCTAAAACTGCAAGAGGCATACGGGAGGGGATTGTGAAGGGTCGTGCATTATGGCAAATGTTTTTTGCTCTCACCCGGTTTTCTAGGTTGGCACTTAACTTTTTTACAAATCGAACTAAGCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

27.61

Weight (kDa)

11.34

Isoelectric Point (pI)

49.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09995 AT5G09995 AT5G09995
fragaria_vesca	FvH4_1g22170 FvH4_1g22170 FvH4_1g22170
malus_domestica	MD01G1018800.v1.1 MD15G1333500.v1.1
prunus_persica	Prupe.6G174000_v2.0.a1 Prupe.6G174000_v2.0.a1 Prupe.6G174000_v2.0.a1
pyrus_communis	pycom01g04870 pycom15g29200
rosa_chinensis	RchiOBHm_Chr2g0116241
rosa_laevigata	RLG00000018250
rosa_multiflora	Rmu_sc0003499.1_g000013 Rmu_sc0004888.1_g000063
rosa_roxburghii	Rroxscaffold_2G00127400
rosa_rugosa	Rorug02G0205100 Rorug02G0205200
rosa_samantha	Rh2AG260700 Rh2BG271800 Rh2CG266900 Rh2DG268900
rosa_wichuraiana	Rw2G020440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	568
AccB1I	GGYRCC	1 cut(s)	601
AccII	CGCG	2 cut(s)	290, 543
AciI	CCGC	9 cut(s)	71, 116, 175, 256, 259, 290, 527, 543, 739
AclWI	GGATC	1 cut(s)	217
AcoI	YGGCCR	2 cut(s)	176, 475
AcuI	CTGAAG	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	457
AflIII	ACRYGT	1 cut(s)	308
AgsI	TTSAA	2 cut(s)	349, 371
AjnI	CCWGG	2 cut(s)	339, 604
AleI	CACNNNNGTG	1 cut(s)	238
AluBI	AGCT	7 cut(s)	25, 66, 359, 376, 400, 463, 620
AluI	AGCT	7 cut(s)	25, 66, 359, 376, 400, 463, 620
Alw21I	GWGCWC	1 cut(s)	465
Alw26I	GTCTC	1 cut(s)	317
AlwI	GGATC	1 cut(s)	217
AoxI	GGCC	3 cut(s)	176, 475, 608
ApaI	GGGCCC	1 cut(s)	612
ApeKI	GCWGC	2 cut(s)	356, 416
Asp700I	GAANNNNTTC	1 cut(s)	399
AspA2I	CCTAGG	1 cut(s)	38
AspLEI	GCGC	2 cut(s)	290, 543
AspS9I	GGNCC	2 cut(s)	608, 609
AsuC2I	CCSGG	2 cut(s)	433, 694
AsuHPI	GGTGA	2 cut(s)	241, 682
AvrII	CCTAGG	1 cut(s)	38
BaeGI	GKGCMC	1 cut(s)	612
BalI	TGGCCA	1 cut(s)	477
BanI	GGYRCC	1 cut(s)	601
BanII	GRGCYC	2 cut(s)	465, 612
BauI	CACGAG	1 cut(s)	510
Bbv12I	GWGCWC	1 cut(s)	465
BbvI	GCAGC	2 cut(s)	368, 403
BccI	CCATC	5 cut(s)	111, 223, 373, 406, 430
BceAI	ACGGC	2 cut(s)	75, 140
BciT130I	CCWGG	2 cut(s)	341, 606
BcnI	CCSGG	2 cut(s)	433, 694
BcoDI	GTCTC	1 cut(s)	317
BfaI	CTAG	2 cut(s)	39, 702
BfuAI	ACCTGC	1 cut(s)	568
BglI	GCCNNNNNGGC	1 cut(s)	124
BisI	GCNGC	5 cut(s)	176, 259, 357, 417, 544
BlnI	CCTAGG	1 cut(s)	38
BlsI	GCNGC	5 cut(s)	177, 260, 358, 418, 545
Bme1390I	CCNGG	4 cut(s)	341, 433, 606, 694
BmgT120I	GGNCC	2 cut(s)	608, 609
BmiI	GGNNCC	3 cut(s)	245, 603, 610
BmrFI	CCNGG	4 cut(s)	341, 433, 606, 694
BmsI	GCATC	1 cut(s)	176
BpuMI	CCSGG	2 cut(s)	433, 694
BsaBI	GATNNNNATC	1 cut(s)	214
BsaJI	CCNNGG	2 cut(s)	38, 605
BsaXI	ACNNNNNCTCC	2 cut(s)	521, 551
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
Bse1I	ACTGG	1 cut(s)	145
Bse8I	GATNNNNATC	1 cut(s)	214
BseBI	CCWGG	2 cut(s)	341, 606
BseDI	CCNNGG	2 cut(s)	38, 605
BseGI	GGATG	2 cut(s)	388, 441
BseJI	GATNNNNATC	1 cut(s)	214
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseMII	CTCAG	5 cut(s)	121, 142, 239, 478, 588
BseNI	ACTGG	1 cut(s)	145
BseRI	GAGGAG	1 cut(s)	545
BseSI	GKGCMC	1 cut(s)	612
BseXI	GCAGC	2 cut(s)	368, 403
BsgI	GTGCAG	1 cut(s)	596
Bsh1236I	CGCG	2 cut(s)	290, 543
BshFI	GGCC	3 cut(s)	178, 477, 610
BshNI	GGYRCC	1 cut(s)	601
BsiHKAI	GWGCWC	1 cut(s)	465
BsiSI	CCGG	2 cut(s)	432, 694
BslI	CCNNNNNNNGG	1 cut(s)	457
BsmAI	GTCTC	1 cut(s)	317
BsnI	GGCC	3 cut(s)	178, 477, 610
Bsp120I	GGGCCC	1 cut(s)	608
Bsp1286I	GDGCHC	2 cut(s)	465, 612
Bsp143I	GATC	2 cut(s)	209, 469
BspACI	CCGC	9 cut(s)	71, 116, 175, 256, 259, 290, 527, 543, 739
BspANI	GGCC	3 cut(s)	178, 477, 610
BspCNI	CTCAG	5 cut(s)	120, 141, 238, 477, 589
BspFNI	CGCG	2 cut(s)	290, 543
BspLI	GGNNCC	3 cut(s)	245, 603, 610
BspMI	ACCTGC	1 cut(s)	568
BspPI	GGATC	1 cut(s)	217
BspQI	GCTCTTC	1 cut(s)	390
BspT107I	GGYRCC	1 cut(s)	601
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	2 cut(s)	38, 605
BssMI	GATC	2 cut(s)	209, 469
BssSI	CACGAG	1 cut(s)	510
BssT1I	CCWWGG	1 cut(s)	38
Bst2BI	CACGAG	1 cut(s)	510
Bst2UI	CCWGG	2 cut(s)	341, 606
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	2 cut(s)	320, 390
BstC8I	GCNNGC	3 cut(s)	27, 73, 286
BstDEI	CTNAG	6 cut(s)	107, 128, 225, 464, 597, 735
BstF5I	GGATG	2 cut(s)	388, 441
BstFNI	CGCG	2 cut(s)	290, 543
BstHHI	GCGC	2 cut(s)	290, 543
BstKTI	GATC	2 cut(s)	212, 472
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	2 cut(s)	209, 469
BstMWI	GCNNNNNNNGC	5 cut(s)	72, 124, 302, 566, 626
BstNI	CCWGG	2 cut(s)	341, 606
BstNSI	RCATGY	1 cut(s)	312
BstSCI	CCNGG	4 cut(s)	339, 431, 604, 692
BstSLI	GKGCMC	1 cut(s)	612
BstUI	CGCG	2 cut(s)	290, 543
BstV1I	GCAGC	2 cut(s)	368, 403
BstX2I	RGATCY	1 cut(s)	209
BstXI	CCANNNNNNTGG	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	209
BsuRI	GGCC	3 cut(s)	178, 477, 610
BtsCI	GGATG	2 cut(s)	388, 441
BtsIMutI	CAGTG	4 cut(s)	141, 195, 245, 472
BveI	ACCTGC	1 cut(s)	568
Cac8I	GCNNGC	3 cut(s)	27, 73, 286
CfoI	GCGC	2 cut(s)	290, 543
Cfr13I	GGNCC	2 cut(s)	608, 609
CviAII	CATG	3 cut(s)	309, 479, 556
DdeI	CTNAG	6 cut(s)	107, 128, 225, 464, 597, 735
DpnI	GATC	2 cut(s)	211, 471
DpnII	GATC	2 cut(s)	209, 469
EaeI	YGGCCR	2 cut(s)	176, 475
Eam1104I	CTCTTC	2 cut(s)	320, 390
EarI	CTCTTC	2 cut(s)	320, 390
EciI	GGCGGA	1 cut(s)	542
Ecl136II	GAGCTC	1 cut(s)	463
Eco130I	CCWWGG	1 cut(s)	38
Eco24I	GRGCYC	2 cut(s)	465, 612
Eco53kI	GAGCTC	1 cut(s)	463
Eco57I	CTGAAG	1 cut(s)	221
EcoICRI	GAGCTC	1 cut(s)	463
EcoO109I	RGGNCCY	1 cut(s)	608
EcoRII	CCWGG	2 cut(s)	339, 604
EcoT14I	CCWWGG	1 cut(s)	38
EcoT38I	GRGCYC	2 cut(s)	465, 612
ErhI	CCWWGG	1 cut(s)	38
FaeI	CATG	3 cut(s)	312, 482, 559
FaiI	YATR	9 cut(s)	80, 156, 310, 389, 458, 480, 557, 638, 670
FatI	CATG	3 cut(s)	308, 478, 555
FauI	CCCGC	1 cut(s)	64
Fnu4HI	GCNGC	5 cut(s)	176, 259, 357, 417, 544
FokI	GGATG	2 cut(s)	395, 448
FriOI	GRGCYC	2 cut(s)	465, 612
Fsp4HI	GCNGC	5 cut(s)	176, 259, 357, 417, 544
FspBI	CTAG	2 cut(s)	39, 702
GlaI	GCGC	2 cut(s)	289, 542
GluI	GCNGC	5 cut(s)	176, 259, 357, 417, 544
HaeIII	GGCC	3 cut(s)	178, 477, 610
HapII	CCGG	2 cut(s)	432, 694
HhaI	GCGC	2 cut(s)	290, 543
Hin1II	CATG	3 cut(s)	312, 482, 559
Hin6I	GCGC	2 cut(s)	288, 541
HinP1I	GCGC	2 cut(s)	288, 541
HpaII	CCGG	2 cut(s)	432, 694
HphI	GGTGA	2 cut(s)	241, 682
Hpy188I	TCNGA	3 cut(s)	209, 228, 591
Hpy188III	TCNNGA	1 cut(s)	404
Hpy99I	CGWCG	1 cut(s)	126
HpyAV	CCTTC	1 cut(s)	649
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	4 cut(s)	326, 577, 629, 665
HpyF10VI	GCNNNNNNNGC	5 cut(s)	72, 124, 302, 566, 626
HpyF3I	CTNAG	6 cut(s)	107, 128, 225, 464, 597, 735
Hsp92II	CATG	3 cut(s)	312, 482, 559
HspAI	GCGC	2 cut(s)	288, 541
Kzo9I	GATC	2 cut(s)	209, 469
LguI	GCTCTTC	1 cut(s)	390
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	2 cut(s)	368, 403
LweI	GCATC	1 cut(s)	176
MaeI	CTAG	2 cut(s)	39, 702
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	2 cut(s)	211, 471
MboI	GATC	2 cut(s)	209, 469
MboII	GAAGA	4 cut(s)	259, 307, 310, 407
MflI	RGATCY	1 cut(s)	209
MhlI	GDGCHC	2 cut(s)	465, 612
MlsI	TGGCCA	1 cut(s)	477
MluCI	AATT	2 cut(s)	17, 483
MluNI	TGGCCA	1 cut(s)	477
MmeI	TCCRAC	1 cut(s)	187
Mox20I	TGGCCA	1 cut(s)	477
MroXI	GAANNNNTTC	1 cut(s)	399
MscI	TGGCCA	1 cut(s)	477
MseI	TTAA	3 cut(s)	45, 159, 714
MslI	CAYNNNNRTG	1 cut(s)	238
Msp20I	TGGCCA	1 cut(s)	477
MspA1I	CMGCKG	1 cut(s)	25
MspI	CCGG	2 cut(s)	432, 694
MspR9I	CCNGG	4 cut(s)	341, 433, 606, 694
MvaI	CCWGG	2 cut(s)	341, 606
MvnI	CGCG	2 cut(s)	290, 543
MwoI	GCNNNNNNNGC	5 cut(s)	72, 124, 302, 566, 626
NciI	CCSGG	2 cut(s)	433, 694
NdeII	GATC	2 cut(s)	209, 469
NlaIII	CATG	3 cut(s)	312, 482, 559
NlaIV	GGNNCC	3 cut(s)	245, 603, 610
NmuCI	GTSAC	1 cut(s)	446
NspI	RCATGY	1 cut(s)	312
OliI	CACNNNNGTG	1 cut(s)	238
PciI	ACATGT	1 cut(s)	308
PciSI	GCTCTTC	1 cut(s)	390
PcsI	WCGNNNNNNNCGW	1 cut(s)	517
PdmI	GAANNNNTTC	1 cut(s)	399
PfoI	TCCNGGA	1 cut(s)	431
PkrI	GCNGC	5 cut(s)	177, 260, 358, 418, 545
PscI	ACATGT	1 cut(s)	308
Psp124BI	GAGCTC	1 cut(s)	465
Psp6I	CCWGG	2 cut(s)	339, 604
PspGI	CCWGG	2 cut(s)	339, 604
PspN4I	GGNNCC	3 cut(s)	245, 603, 610
PspOMI	GGGCCC	1 cut(s)	608
PspPI	GGNCC	2 cut(s)	608, 609
PsuI	RGATCY	1 cut(s)	209
PvuII	CAGCTG	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	238
SacI	GAGCTC	1 cut(s)	465
SapI	GCTCTTC	1 cut(s)	390
SaqAI	TTAA	3 cut(s)	45, 159, 714
SatI	GCNGC	5 cut(s)	176, 259, 357, 417, 544
Sau3AI	GATC	2 cut(s)	209, 469
Sau96I	GGNCC	2 cut(s)	608, 609
ScrFI	CCNGG	4 cut(s)	341, 433, 606, 694
SduI	GDGCHC	2 cut(s)	465, 612
SfaNI	GCATC	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	238
Sse9I	AATT	2 cut(s)	17, 483
SsiI	CCGC	9 cut(s)	71, 116, 175, 256, 259, 290, 527, 543, 739
SspMI	CTAG	2 cut(s)	39, 702
SstI	GAGCTC	1 cut(s)	465
StyD4I	CCNGG	4 cut(s)	339, 431, 604, 692
StyI	CCWWGG	1 cut(s)	38
TaaI	ACNGT	1 cut(s)	205
TaqI	TCGA	2 cut(s)	121, 730
TasI	AATT	2 cut(s)	17, 483
TauI	GCSGC	3 cut(s)	178, 261, 546
Tru1I	TTAA	3 cut(s)	45, 159, 714
Tru9I	TTAA	3 cut(s)	45, 159, 714
TscAI	CASTG	4 cut(s)	141, 202, 245, 472
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	2 cut(s)	356, 416
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	3 cut(s)	174, 495, 552
TspGWI	ACGGA	1 cut(s)	130
TspRI	CASTG	4 cut(s)	141, 202, 245, 472
XceI	RCATGY	1 cut(s)	312
XmaJI	CCTAGG	1 cut(s)	38
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	2 cut(s)	39, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.