RchiOBHm_Chr2g0116241

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0007424
Physical Location & Seq
Forward (+)
28598701 .. 28600282
1582 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48930

Sequence Viewer

Length: 735 bp
ATGTCGTTTGCTCTGAAATTGAATCTCTCAAACCCTAGAATCAAACCCAACTCCAACTTCGGAGGCCTCGCCGGTACCGCCACTAATCCCCACCGTCTCCCCTACCATCTCAGACTCCCCGCACGGCGGTTCAACTCCTTTTCCGTACAGTCAGAGTATGTTAACGGAGCTTCAGAGCCGTCAATTTCATCGCATTACACAGAGAGCATCGGAACCCCATCACCTTCGTCCCACCTTCTTCAGTGGAACCTCACCCAACGACACGTCGTTGTCCTCAATGTCGTTGCTTGCGCTGCTGCGGTTTCTGCAACGTGGCTCTTCTGCTCTGCAATTCCAACGCTTCTGGCTTTCAAGAGAGCAGCTGATTCACTTGCAAAGCTGATGGATGTTATGAGGGAAGAGCTTCCGGATACAATGGCGGCTGTTCGCTTATCCGGGATGGAGATCAGTGACCTAACCATGGAGCTCAGTGATCTTGGCCAGGAGATTACACAAGGTGTTAGGAGTTCTACTCGAGCTGTTCGTGTGGCGGAGGACAGGTTGCGCCGCTTGACAAACATGGCCCCTACAGTAGCAAGTCCGAAAAATGAGGTTCCGGGGCCACTTTTGGCTACAACTGCAAGAAGCATACGAGAGGGAGTCGTGAAGGGTCGTGCTCTCTGGCAAATGTTTTTCACCATCACCCGGTTTTCTAGGTTGGCACTCAACTTTTTGATCAGACGGAAGAAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

244

Amino Acids

26.96

Weight (kDa)

10.67

Isoelectric Point (pI)

49.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 74
AccB1I GGYRCC 1 cut(s) 74
AccIII TCCGGA 1 cut(s) 406
AciI CCGC 7 cut(s) 78, 120, 127, 299, 419, 530, 547
AcoI YGGCCR 1 cut(s) 478
AcuI CTGAAG 2 cut(s) 156, 224
AdeI CACNNNGTG 1 cut(s) 497
AfaI GTAC 2 cut(s) 76, 147
AfiI CCNNNNNNNGG 3 cut(s) 126, 460, 684
AflIII ACRYGT 1 cut(s) 262
AgsI TTSAA 3 cut(s) 22, 133, 352
AjiI CACGTC 1 cut(s) 265
AjnI CCWGG 1 cut(s) 480
AjuI GAANNNNNNNTTGG 2 cut(s) 41, 73
AluBI AGCT 6 cut(s) 170, 362, 379, 403, 466, 518
AluI AGCT 6 cut(s) 170, 362, 379, 403, 466, 518
Alw21I GWGCWC 2 cut(s) 468, 658
Alw26I GTCTC 1 cut(s) 101
Ama87I CYCGRG 1 cut(s) 513
Aor13HI TCCGGA 1 cut(s) 406
AoxI GGCC 4 cut(s) 64, 478, 561, 599
ApeKI GCWGC 3 cut(s) 293, 296, 359
Asp700I GAANNNNTTC 1 cut(s) 402
Asp718I GGTACC 1 cut(s) 74
AspLEI GCGC 2 cut(s) 293, 546
AspS9I GGNCC 2 cut(s) 562, 599
AsuC2I CCSGG 3 cut(s) 436, 597, 685
AsuHPI GGTGA 4 cut(s) 213, 244, 667, 673
AvaI CYCGRG 1 cut(s) 513
BalI TGGCCA 1 cut(s) 480
BanI GGYRCC 1 cut(s) 74
BanII GRGCYC 1 cut(s) 468
Bbv12I GWGCWC 2 cut(s) 468, 658
BbvI GCAGC 3 cut(s) 280, 283, 371
BccI CCATC 5 cut(s) 114, 226, 376, 433, 686
BceAI ACGGC 2 cut(s) 140, 163
BciT130I CCWGG 1 cut(s) 482
BciVI GTATCC 1 cut(s) 403
BclI TGATCA 1 cut(s) 714
BcnI CCSGG 3 cut(s) 436, 597, 685
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 2 cut(s) 36, 693
BfmI CTRYAG 1 cut(s) 567
BfuI GTATCC 1 cut(s) 403
BisI GCNGC 5 cut(s) 294, 297, 360, 420, 547
BlsI GCNGC 5 cut(s) 295, 298, 361, 421, 548
Bme1390I CCNGG 4 cut(s) 436, 482, 597, 685
BmeT110I CYCGRG 1 cut(s) 513
BmgBI CACGTC 1 cut(s) 265
BmgT120I GGNCC 2 cut(s) 562, 599
BmiI GGNNCC 6 cut(s) 76, 214, 248, 564, 594, 600
BmrFI CCNGG 4 cut(s) 436, 482, 597, 685
BmsI GCATC 1 cut(s) 216
BplI GAGNNNNNCTC 2 cut(s) 496, 528
BpuMI CCSGG 3 cut(s) 436, 597, 685
BsaBI GATNNNNATC 1 cut(s) 443
BsaJI CCNNGG 2 cut(s) 459, 596
BsaWI WCCGGW 1 cut(s) 406
BsaXI ACNNNNNCTCC 2 cut(s) 524, 554
Bsc4I CCNNNNNNNGG 3 cut(s) 126, 460, 684
Bse118I RCCGGY 1 cut(s) 71
Bse8I GATNNNNATC 1 cut(s) 443
BseAI TCCGGA 1 cut(s) 406
BseBI CCWGG 1 cut(s) 482
BseDI CCNNGG 2 cut(s) 459, 596
BseGI GGATG 2 cut(s) 391, 444
BseJI GATNNNNATC 1 cut(s) 443
BseLI CCNNNNNNNGG 3 cut(s) 126, 460, 684
BseMII CTCAG 2 cut(s) 124, 481
BseXI GCAGC 3 cut(s) 280, 283, 371
BshFI GGCC 4 cut(s) 66, 480, 563, 601
BshNI GGYRCC 1 cut(s) 74
BsiHKAI GWGCWC 2 cut(s) 468, 658
BsiHKCI CYCGRG 1 cut(s) 513
BsiSI CCGG 5 cut(s) 72, 407, 435, 596, 685
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 3 cut(s) 126, 460, 684
BsmAI GTCTC 1 cut(s) 101
BsmBI CGTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 214
BsnI GGCC 4 cut(s) 66, 480, 563, 601
BsoBI CYCGRG 1 cut(s) 513
Bsp1286I GDGCHC 2 cut(s) 468, 658
Bsp13I TCCGGA 1 cut(s) 406
Bsp143I GATC 3 cut(s) 444, 472, 714
Bsp19I CCATGG 1 cut(s) 459
BspACI CCGC 7 cut(s) 78, 120, 127, 299, 419, 530, 547
BspANI GGCC 4 cut(s) 66, 480, 563, 601
BspCNI CTCAG 2 cut(s) 123, 480
BspEI TCCGGA 1 cut(s) 406
BspLI GGNNCC 6 cut(s) 76, 214, 248, 564, 594, 600
BspQI GCTCTTC 2 cut(s) 323, 393
BspT107I GGYRCC 1 cut(s) 74
BsrFI RCCGGY 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 2 cut(s) 459, 596
BssMI GATC 3 cut(s) 444, 472, 714
BssT1I CCWWGG 1 cut(s) 459
Bst2UI CCWGG 1 cut(s) 482
Bst4CI ACNGT 3 cut(s) 95, 150, 571
Bst6I CTCTTC 2 cut(s) 323, 393
BstC8I GCNNGC 1 cut(s) 289
BstDEI CTNAG 2 cut(s) 110, 467
BstDSI CCRYGG 1 cut(s) 459
BstF5I GGATG 2 cut(s) 391, 444
BstHHI GCGC 2 cut(s) 293, 546
BstKTI GATC 3 cut(s) 447, 475, 717
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 3 cut(s) 444, 472, 714
BstMWI GCNNNNNNNGC 4 cut(s) 77, 293, 305, 617
BstNI CCWGG 1 cut(s) 482
BstSCI CCNGG 4 cut(s) 434, 480, 595, 683
BstSFI CTRYAG 1 cut(s) 567
BstV1I GCAGC 3 cut(s) 280, 283, 371
BsuI GTATCC 1 cut(s) 403
BsuRI GGCC 4 cut(s) 66, 480, 563, 601
BtgI CCRYGG 1 cut(s) 459
BtgZI GCGATG 1 cut(s) 174
BtrI CACGTC 1 cut(s) 265
BtsCI GGATG 2 cut(s) 391, 444
BtsIMutI CAGTG 3 cut(s) 248, 454, 475
Cac8I GCNNGC 1 cut(s) 289
CfoI GCGC 2 cut(s) 293, 546
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 2 cut(s) 562, 599
Csp6I GTAC 2 cut(s) 75, 146
CviAII CATG 2 cut(s) 460, 559
CviQI GTAC 2 cut(s) 75, 146
DdeI CTNAG 2 cut(s) 110, 467
DpnI GATC 3 cut(s) 446, 474, 716
DpnII GATC 3 cut(s) 444, 472, 714
DraIII CACNNNGTG 1 cut(s) 497
EaeI YGGCCR 1 cut(s) 478
Eam1104I CTCTTC 2 cut(s) 323, 393
EarI CTCTTC 2 cut(s) 323, 393
EciI GGCGGA 1 cut(s) 545
Ecl136II GAGCTC 1 cut(s) 466
Eco130I CCWWGG 1 cut(s) 459
Eco147I AGGCCT 1 cut(s) 66
Eco24I GRGCYC 1 cut(s) 468
Eco53kI GAGCTC 1 cut(s) 466
Eco57I CTGAAG 2 cut(s) 156, 224
Eco88I CYCGRG 1 cut(s) 513
EcoICRI GAGCTC 1 cut(s) 466
EcoRII CCWGG 1 cut(s) 480
EcoT14I CCWWGG 1 cut(s) 459
EcoT38I GRGCYC 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 459
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 2 cut(s) 463, 562
FaiI YATR 5 cut(s) 159, 392, 461, 560, 629
FaqI GGGAC 1 cut(s) 214
FatI CATG 2 cut(s) 459, 558
FauI CCCGC 1 cut(s) 127
FbaI TGATCA 1 cut(s) 714
Fnu4HI GCNGC 5 cut(s) 294, 297, 360, 420, 547
FokI GGATG 2 cut(s) 398, 451
FriOI GRGCYC 1 cut(s) 468
Fsp4HI GCNGC 5 cut(s) 294, 297, 360, 420, 547
FspBI CTAG 2 cut(s) 36, 693
GlaI GCGC 2 cut(s) 292, 545
GluI GCNGC 5 cut(s) 294, 297, 360, 420, 547
HaeIII GGCC 4 cut(s) 66, 480, 563, 601
HapII CCGG 5 cut(s) 72, 407, 435, 596, 685
HhaI GCGC 2 cut(s) 293, 546
Hin1II CATG 2 cut(s) 463, 562
Hin6I GCGC 2 cut(s) 291, 544
HinP1I GCGC 2 cut(s) 291, 544
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 5 cut(s) 22, 39, 114, 365, 639
HpaI GTTAAC 1 cut(s) 163
HpaII CCGG 5 cut(s) 72, 407, 435, 596, 685
HphI GGTGA 4 cut(s) 213, 244, 667, 673
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 8 cut(s) 15, 62, 113, 154, 175, 212, 582, 719
Hpy188III TCNNGA 3 cut(s) 352, 407, 643
Hpy8I GTNNAC 1 cut(s) 163
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 3 cut(s) 234, 245, 640
HpyCH4III ACNGT 3 cut(s) 95, 150, 571
HpyCH4IV ACGT 2 cut(s) 264, 311
HpyCH4V TGCA 4 cut(s) 308, 329, 374, 620
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 293, 305, 617
HpyF3I CTNAG 2 cut(s) 110, 467
HpySE526I ACGT 2 cut(s) 264, 311
Hsp92II CATG 2 cut(s) 463, 562
HspAI GCGC 2 cut(s) 291, 544
Kpn2I TCCGGA 1 cut(s) 406
KpnI GGTACC 1 cut(s) 78
Ksp22I TGATCA 1 cut(s) 714
KspAI GTTAAC 1 cut(s) 163
Kzo9I GATC 3 cut(s) 444, 472, 714
LguI GCTCTTC 2 cut(s) 323, 393
LmnI GCTCC 2 cut(s) 167, 463
Lsp1109I GCAGC 3 cut(s) 280, 283, 371
LweI GCATC 1 cut(s) 216
MaeI CTAG 2 cut(s) 36, 693
MaeII ACGT 2 cut(s) 264, 311
MaeIII GTNAC 1 cut(s) 449
MalI GATC 3 cut(s) 446, 474, 716
MboI GATC 3 cut(s) 444, 472, 714
MboII GAAGA 3 cut(s) 230, 310, 410
MhlI GDGCHC 2 cut(s) 468, 658
MlsI TGGCCA 1 cut(s) 480
MluCI AATT 3 cut(s) 17, 183, 330
MluNI TGGCCA 1 cut(s) 480
MlyI GAGTC 2 cut(s) 108, 648
MmeI TCCRAC 2 cut(s) 78, 359
MnlI CCTC 8 cut(s) 56, 77, 260, 284, 387, 526, 583, 628
Mox20I TGGCCA 1 cut(s) 480
MroI TCCGGA 1 cut(s) 406
MroXI GAANNNNTTC 1 cut(s) 402
MscI TGGCCA 1 cut(s) 480
MseI TTAA 1 cut(s) 162
Msp20I TGGCCA 1 cut(s) 480
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 5 cut(s) 72, 407, 435, 596, 685
MspR9I CCNGG 4 cut(s) 436, 482, 597, 685
MvaI CCWGG 1 cut(s) 482
MwoI GCNNNNNNNGC 4 cut(s) 77, 293, 305, 617
NciI CCSGG 3 cut(s) 436, 597, 685
NcoI CCATGG 1 cut(s) 459
NdeII GATC 3 cut(s) 444, 472, 714
NlaIII CATG 2 cut(s) 463, 562
NlaIV GGNNCC 6 cut(s) 76, 214, 248, 564, 594, 600
NmuCI GTSAC 1 cut(s) 449
PaeR7I CTCGAG 1 cut(s) 513
PceI AGGCCT 1 cut(s) 66
PciSI GCTCTTC 2 cut(s) 323, 393
PcsI WCGNNNNNNNCGW 1 cut(s) 520
PdmI GAANNNNTTC 1 cut(s) 402
PfeI GAWTC 3 cut(s) 22, 39, 365
PfoI TCCNGGA 1 cut(s) 434
PkrI GCNGC 5 cut(s) 295, 298, 361, 421, 548
PleI GAGTC 2 cut(s) 108, 647
PpsI GAGTC 2 cut(s) 108, 647
Psp124BI GAGCTC 1 cut(s) 468
Psp6I CCWGG 1 cut(s) 480
PspGI CCWGG 1 cut(s) 480
PspN4I GGNNCC 6 cut(s) 76, 214, 248, 564, 594, 600
PspPI GGNCC 2 cut(s) 562, 599
PspXI VCTCGAGB 1 cut(s) 513
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 2 cut(s) 76, 147
RsaNI GTAC 2 cut(s) 75, 146
SacI GAGCTC 1 cut(s) 468
SapI GCTCTTC 2 cut(s) 323, 393
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 5 cut(s) 294, 297, 360, 420, 547
Sau3AI GATC 3 cut(s) 444, 472, 714
Sau96I GGNCC 2 cut(s) 562, 599
SchI GAGTC 2 cut(s) 108, 648
ScrFI CCNGG 4 cut(s) 436, 482, 597, 685
SduI GDGCHC 2 cut(s) 468, 658
SfaNI GCATC 1 cut(s) 216
SfcI CTRYAG 1 cut(s) 567
Sfr274I CTCGAG 1 cut(s) 513
SlaI CTCGAG 1 cut(s) 513
SmlI CTYRAG 1 cut(s) 513
SmoI CTYRAG 1 cut(s) 513
Sse9I AATT 3 cut(s) 17, 183, 330
SseBI AGGCCT 1 cut(s) 66
SsiI CCGC 7 cut(s) 78, 120, 127, 299, 419, 530, 547
SspMI CTAG 2 cut(s) 36, 693
SstI GAGCTC 1 cut(s) 468
StuI AGGCCT 1 cut(s) 66
StyD4I CCNGG 4 cut(s) 434, 480, 595, 683
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 3 cut(s) 95, 150, 571
TaiI ACGT 2 cut(s) 267, 314
TaqI TCGA 1 cut(s) 514
TasI AATT 3 cut(s) 17, 183, 330
TauI GCSGC 2 cut(s) 422, 549
TfiI GAWTC 3 cut(s) 22, 39, 365
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 3 cut(s) 248, 454, 475
TseFI GTSAC 1 cut(s) 449
TseI GCWGC 3 cut(s) 293, 296, 359
Tsp45I GTSAC 1 cut(s) 449
TspDTI ATGAA 1 cut(s) 177
TspGWI ACGGA 2 cut(s) 133, 180
TspRI CASTG 3 cut(s) 248, 454, 475
XhoI CTCGAG 1 cut(s) 513
XmnI GAANNNNTTC 1 cut(s) 402
XspI CTAG 2 cut(s) 36, 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.