Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007424

Physical Location & Seq

Genomic Coordinates Forward (+)

25879991 .. 25881574

Gene Structure 1584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g29200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGAAAATTACATACAAACGAGCTTTTGCGTTGCTGAGGGAAGCCTGCGGTGCCGGTGGAGATTTCGAGGGCCGAGTTACCGAGGGGAGAGCGAGAGAGCAAGAGGCAATAGCAATGTTGGTGGGTGTGAAATTACAGTTGGCGTGGAACCCTAGGATTAACCAGAACGCCAACCACCGCTTTGCGGTCAACATAAACCCTCGCCGCCTGCCCCACCATCTCAGGCTACCGCCTCGACGGCTCAGCTCAGTGTCCGTCCAGTCGCAGTATGTTAAAGAAGCATCTGGGCGGCCAGTTTCATCTCTTTACACTGAAACTGTCGGATCTCCATCACTTTCTCAGACTTCACTTCTTCAGCCCCCTCAGTGGAACCTCACCCACCGCCACCTCGTCGTCCTCAATGTCGTTGCTTGCGCGGTAGCAGTTTCGGCGACATGTCTCTTCTTCTCTGCAATCCCCACCCTCCTGGCTTTCAAAAGAGCAGCTCAATCACTTGAAAAGCTGATGGATGTTATGAGGGAAGAGCTTCCCGACACGATGGCTGCTGTTCGCTTATCCGGGATGGAGATTAGCGACCTCACTATGGAGCTCAGTGATATTGGCCATGAAATTACACAAGGCGTTAGAAGTTCCACTCGTGCTGTTCGTGTGGCGGAGGAGAGGTTGCGCGGCTTGACAAACATGGCTTCATCAGCACCGGTGCAGGTGGTAAGTCAGAAAACTGAGGTGCCAGGGCCCGTTTTAGCTAAAACTGCAAGAGGCATACGGGAGGGGATTGTGAAGGGTCGTGCACTATGGCAAATGTTTTTCGCTCTCACCCGGTTTTCTAGGTTGGCACTTAACTTTTTTACAAATCGAACAAAATCGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

291

Amino Acids

32.1

Weight (kDa)

10.68

Isoelectric Point (pI)

46.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09995 AT5G09995 AT5G09995
fragaria_vesca	FvH4_1g22170 FvH4_1g22170 FvH4_1g22170
malus_domestica	MD01G1018800.v1.1 MD15G1333500.v1.1
prunus_persica	Prupe.6G174000_v2.0.a1 Prupe.6G174000_v2.0.a1 Prupe.6G174000_v2.0.a1
pyrus_communis	pycom01g04870 pycom15g29200
rosa_chinensis	RchiOBHm_Chr2g0116241
rosa_laevigata	RLG00000018250
rosa_multiflora	Rmu_sc0003499.1_g000013 Rmu_sc0004888.1_g000063
rosa_roxburghii	Rroxscaffold_2G00127400
rosa_rugosa	Rorug02G0205100 Rorug02G0205200
rosa_samantha	Rh2AG260700 Rh2BG271800 Rh2CG266900 Rh2DG268900
rosa_wichuraiana	Rw2G020440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	694
Acc36I	ACCTGC	1 cut(s)	694
AccB1I	GGYRCC	2 cut(s)	50, 727
AccII	CGCG	2 cut(s)	416, 669
AclWI	GGATC	1 cut(s)	331
AcoI	YGGCCR	2 cut(s)	290, 601
AcuI	CTGAAG	1 cut(s)	338
AfiI	CCNNNNNNNGG	3 cut(s)	184, 366, 583
AflIII	ACRYGT	1 cut(s)	434
AgeI	ACCGGT	1 cut(s)	697
AgsI	TTSAA	2 cut(s)	475, 497
AjnI	CCWGG	2 cut(s)	465, 730
AjuI	GAANNNNNNNTTGG	2 cut(s)	122, 154
AluBI	AGCT	7 cut(s)	23, 246, 485, 502, 526, 589, 746
AluI	AGCT	7 cut(s)	23, 246, 485, 502, 526, 589, 746
Alw21I	GWGCWC	2 cut(s)	591, 793
Alw26I	GTCTC	1 cut(s)	443
Alw44I	GTGCAC	1 cut(s)	789
AlwI	GGATC	1 cut(s)	331
AoxI	GGCC	4 cut(s)	70, 290, 601, 734
ApaI	GGGCCC	1 cut(s)	738
ApaLI	GTGCAC	1 cut(s)	789
ApeKI	GCWGC	2 cut(s)	482, 542
AsiGI	ACCGGT	1 cut(s)	697
Asp700I	GAANNNNTTC	1 cut(s)	525
AspA2I	CCTAGG	1 cut(s)	152
AspLEI	GCGC	2 cut(s)	416, 669
AspS9I	GGNCC	3 cut(s)	70, 734, 735
AsuC2I	CCSGG	2 cut(s)	559, 820
AsuHPI	GGTGA	2 cut(s)	367, 808
AvrII	CCTAGG	1 cut(s)	152
BaeGI	GKGCMC	2 cut(s)	738, 793
BalI	TGGCCA	1 cut(s)	603
BanI	GGYRCC	2 cut(s)	50, 727
BanII	GRGCYC	2 cut(s)	591, 738
BauI	CACGAG	1 cut(s)	636
Bbv12I	GWGCWC	2 cut(s)	591, 793
BbvCI	CCTCAGC	1 cut(s)	35
BbvI	GCAGC	2 cut(s)	494, 529
BccI	CCATC	5 cut(s)	225, 337, 499, 532, 556
BceAI	ACGGC	1 cut(s)	254
BciT130I	CCWGG	2 cut(s)	467, 732
BcnI	CCSGG	2 cut(s)	559, 820
BcoDI	GTCTC	1 cut(s)	443
BfaI	CTAG	2 cut(s)	153, 828
BfuAI	ACCTGC	1 cut(s)	694
BglI	GCCNNNNNGGC	1 cut(s)	238
BisI	GCNGC	5 cut(s)	205, 290, 483, 543, 670
BlnI	CCTAGG	1 cut(s)	152
BlpI	GCTNAGC	1 cut(s)	242
BlsI	GCNGC	5 cut(s)	206, 291, 484, 544, 671
Bme1390I	CCNGG	4 cut(s)	467, 559, 732, 820
BmgT120I	GGNCC	3 cut(s)	70, 734, 735
BmiI	GGNNCC	5 cut(s)	52, 149, 371, 729, 736
BmrFI	CCNGG	4 cut(s)	467, 559, 732, 820
BmsI	GCATC	1 cut(s)	290
Bpu10I	CCTNAGC	1 cut(s)	35
Bpu1102I	GCTNAGC	1 cut(s)	242
BpuMI	CCSGG	2 cut(s)	559, 820
BsaBI	GATNNNNATC	1 cut(s)	328
BsaJI	CCNNGG	3 cut(s)	81, 152, 731
BsaWI	WCCGGW	1 cut(s)	697
BsaXI	ACNNNNNCTCC	2 cut(s)	647, 677
Bsc4I	CCNNNNNNNGG	3 cut(s)	184, 366, 583
Bse118I	RCCGGY	2 cut(s)	53, 697
Bse1I	ACTGG	2 cut(s)	259, 293
Bse3DI	GCAATG	1 cut(s)	120
Bse8I	GATNNNNATC	1 cut(s)	328
BseBI	CCWGG	2 cut(s)	467, 732
BseDI	CCNNGG	3 cut(s)	81, 152, 731
BseGI	GGATG	2 cut(s)	514, 567
BseJI	GATNNNNATC	1 cut(s)	328
BseLI	CCNNNNNNNGG	3 cut(s)	184, 366, 583
BseMI	GCAATG	1 cut(s)	120
BseMII	CTCAG	8 cut(s)	26, 235, 256, 261, 353, 377, 604, 714
BseNI	ACTGG	2 cut(s)	259, 293
BseRI	GAGGAG	1 cut(s)	671
BseSI	GKGCMC	2 cut(s)	738, 793
BseXI	GCAGC	2 cut(s)	494, 529
BsgI	GTGCAG	1 cut(s)	722
Bsh1236I	CGCG	2 cut(s)	416, 669
BshFI	GGCC	4 cut(s)	72, 292, 603, 736
BshNI	GGYRCC	2 cut(s)	50, 727
BshTI	ACCGGT	1 cut(s)	697
BsiHKAI	GWGCWC	2 cut(s)	591, 793
BsiSI	CCGG	4 cut(s)	54, 558, 698, 820
BslI	CCNNNNNNNGG	3 cut(s)	184, 366, 583
BsmAI	GTCTC	1 cut(s)	443
BsnI	GGCC	4 cut(s)	72, 292, 603, 736
Bsp120I	GGGCCC	1 cut(s)	734
Bsp1286I	GDGCHC	3 cut(s)	591, 738, 793
Bsp143I	GATC	1 cut(s)	323
Bsp1720I	GCTNAGC	1 cut(s)	242
BspANI	GGCC	4 cut(s)	72, 292, 603, 736
BspCNI	CTCAG	8 cut(s)	27, 234, 255, 260, 352, 376, 603, 715
BspFNI	CGCG	2 cut(s)	416, 669
BspLI	GGNNCC	5 cut(s)	52, 149, 371, 729, 736
BspMI	ACCTGC	1 cut(s)	694
BspPI	GGATC	1 cut(s)	331
BspQI	GCTCTTC	1 cut(s)	516
BspT107I	GGYRCC	2 cut(s)	50, 727
BsrDI	GCAATG	1 cut(s)	120
BsrFI	RCCGGY	2 cut(s)	53, 697
BsrI	ACTGG	2 cut(s)	259, 293
BssAI	RCCGGY	2 cut(s)	53, 697
BssECI	CCNNGG	3 cut(s)	81, 152, 731
BssMI	GATC	1 cut(s)	323
BssSI	CACGAG	1 cut(s)	636
BssT1I	CCWWGG	1 cut(s)	152
Bst2BI	CACGAG	1 cut(s)	636
Bst2UI	CCWGG	2 cut(s)	467, 732
Bst4CI	ACNGT	2 cut(s)	138, 319
Bst6I	CTCTTC	2 cut(s)	446, 516
BstC8I	GCNNGC	3 cut(s)	46, 209, 412
BstDEI	CTNAG	8 cut(s)	35, 221, 242, 247, 339, 363, 590, 723
BstF5I	GGATG	2 cut(s)	514, 567
BstFNI	CGCG	2 cut(s)	416, 669
BstHHI	GCGC	2 cut(s)	416, 669
BstKTI	GATC	1 cut(s)	326
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	1 cut(s)	323
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 238, 428, 692, 752
BstNI	CCWGG	2 cut(s)	467, 732
BstNSI	RCATGY	1 cut(s)	438
BstSCI	CCNGG	4 cut(s)	465, 557, 730, 818
BstSLI	GKGCMC	2 cut(s)	738, 793
BstUI	CGCG	2 cut(s)	416, 669
BstV1I	GCAGC	2 cut(s)	494, 529
BstX2I	RGATCY	1 cut(s)	323
BstXI	CCANNNNNNTGG	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	323
BsuRI	GGCC	4 cut(s)	72, 292, 603, 736
BtsCI	GGATG	2 cut(s)	514, 567
BtsIMutI	CAGTG	4 cut(s)	255, 309, 371, 598
BveI	ACCTGC	1 cut(s)	694
Cac8I	GCNNGC	3 cut(s)	46, 209, 412
CfoI	GCGC	2 cut(s)	416, 669
Cfr10I	RCCGGY	2 cut(s)	53, 697
Cfr13I	GGNCC	3 cut(s)	70, 734, 735
CspAI	ACCGGT	1 cut(s)	697
CspCI	CAANNNNNGTGG	2 cut(s)	102, 137
CviAII	CATG	3 cut(s)	435, 605, 682
DdeI	CTNAG	8 cut(s)	35, 221, 242, 247, 339, 363, 590, 723
DpnI	GATC	1 cut(s)	325
DpnII	GATC	1 cut(s)	323
EaeI	YGGCCR	2 cut(s)	290, 601
Eam1104I	CTCTTC	2 cut(s)	446, 516
EarI	CTCTTC	2 cut(s)	446, 516
EciI	GGCGGA	1 cut(s)	668
Ecl136II	GAGCTC	1 cut(s)	589
Eco130I	CCWWGG	1 cut(s)	152
Eco24I	GRGCYC	2 cut(s)	591, 738
Eco53kI	GAGCTC	1 cut(s)	589
Eco57I	CTGAAG	1 cut(s)	338
EcoICRI	GAGCTC	1 cut(s)	589
EcoO109I	RGGNCCY	1 cut(s)	734
EcoRII	CCWGG	2 cut(s)	465, 730
EcoT14I	CCWWGG	1 cut(s)	152
EcoT38I	GRGCYC	2 cut(s)	591, 738
ErhI	CCWWGG	1 cut(s)	152
FaeI	CATG	3 cut(s)	438, 608, 685
FatI	CATG	3 cut(s)	434, 604, 681
Fnu4HI	GCNGC	5 cut(s)	205, 290, 483, 543, 670
FokI	GGATG	2 cut(s)	521, 574
FriOI	GRGCYC	2 cut(s)	591, 738
Fsp4HI	GCNGC	5 cut(s)	205, 290, 483, 543, 670
FspBI	CTAG	2 cut(s)	153, 828
GlaI	GCGC	2 cut(s)	415, 668
GluI	GCNGC	5 cut(s)	205, 290, 483, 543, 670
HaeIII	GGCC	4 cut(s)	72, 292, 603, 736
HapII	CCGG	4 cut(s)	54, 558, 698, 820
HhaI	GCGC	2 cut(s)	416, 669
Hin1II	CATG	3 cut(s)	438, 608, 685
Hin6I	GCGC	2 cut(s)	414, 667
HinP1I	GCGC	2 cut(s)	414, 667
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HpaII	CCGG	4 cut(s)	54, 558, 698, 820
HphI	GGTGA	2 cut(s)	367, 808
Hpy166II	GTNNAC	2 cut(s)	190, 791
Hpy188I	TCNGA	3 cut(s)	323, 342, 717
Hpy188III	TCNNGA	1 cut(s)	530
Hpy8I	GTNNAC	2 cut(s)	190, 791
Hpy99I	CGWCG	2 cut(s)	240, 395
HpyAV	CCTTC	1 cut(s)	775
HpyCH4III	ACNGT	2 cut(s)	138, 319
HpyCH4V	TGCA	4 cut(s)	452, 703, 755, 791
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 238, 428, 692, 752
HpyF3I	CTNAG	8 cut(s)	35, 221, 242, 247, 339, 363, 590, 723
Hsp92II	CATG	3 cut(s)	438, 608, 685
HspAI	GCGC	2 cut(s)	414, 667
Kzo9I	GATC	1 cut(s)	323
LguI	GCTCTTC	1 cut(s)	516
LmnI	GCTCC	1 cut(s)	586
Lsp1109I	GCAGC	2 cut(s)	494, 529
LweI	GCATC	1 cut(s)	290
MaeI	CTAG	2 cut(s)	153, 828
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	1 cut(s)	325
MboI	GATC	1 cut(s)	323
MboII	GAAGA	4 cut(s)	344, 433, 436, 533
MflI	RGATCY	1 cut(s)	323
MhlI	GDGCHC	3 cut(s)	591, 738, 793
MlsI	TGGCCA	1 cut(s)	603
MluCI	AATT	3 cut(s)	6, 131, 609
MluNI	TGGCCA	1 cut(s)	603
MmeI	TCCRAC	1 cut(s)	301
Mox20I	TGGCCA	1 cut(s)	603
MroXI	GAANNNNTTC	1 cut(s)	525
MscI	TGGCCA	1 cut(s)	603
MseI	TTAA	3 cut(s)	159, 273, 840
Msp20I	TGGCCA	1 cut(s)	603
MspI	CCGG	4 cut(s)	54, 558, 698, 820
MspR9I	CCNGG	4 cut(s)	467, 559, 732, 820
MvaI	CCWGG	2 cut(s)	467, 732
MvnI	CGCG	2 cut(s)	416, 669
MwoI	GCNNNNNNNGC	5 cut(s)	50, 238, 428, 692, 752
NciI	CCSGG	2 cut(s)	559, 820
NdeII	GATC	1 cut(s)	323
NlaIII	CATG	3 cut(s)	438, 608, 685
NlaIV	GGNNCC	5 cut(s)	52, 149, 371, 729, 736
NmeAIII	GCCGAG	1 cut(s)	98
NspI	RCATGY	1 cut(s)	438
PaqCI	CACCTGC	1 cut(s)	694
PciI	ACATGT	1 cut(s)	434
PciSI	GCTCTTC	1 cut(s)	516
PcsI	WCGNNNNNNNCGW	1 cut(s)	643
PdmI	GAANNNNTTC	1 cut(s)	525
PfoI	TCCNGGA	1 cut(s)	557
PinAI	ACCGGT	1 cut(s)	697
PkrI	GCNGC	5 cut(s)	206, 291, 484, 544, 671
PscI	ACATGT	1 cut(s)	434
Psp124BI	GAGCTC	1 cut(s)	591
Psp6I	CCWGG	2 cut(s)	465, 730
PspGI	CCWGG	2 cut(s)	465, 730
PspN4I	GGNNCC	5 cut(s)	52, 149, 371, 729, 736
PspOMI	GGGCCC	1 cut(s)	734
PspPI	GGNCC	3 cut(s)	70, 734, 735
PsuI	RGATCY	1 cut(s)	323
SacI	GAGCTC	1 cut(s)	591
SapI	GCTCTTC	1 cut(s)	516
SaqAI	TTAA	3 cut(s)	159, 273, 840
SatI	GCNGC	5 cut(s)	205, 290, 483, 543, 670
Sau3AI	GATC	1 cut(s)	323
Sau96I	GGNCC	3 cut(s)	70, 734, 735
ScrFI	CCNGG	4 cut(s)	467, 559, 732, 820
SduI	GDGCHC	3 cut(s)	591, 738, 793
SfaNI	GCATC	1 cut(s)	290
SgrAI	CRCCGGYG	1 cut(s)	697
Sse9I	AATT	3 cut(s)	6, 131, 609
SspMI	CTAG	2 cut(s)	153, 828
SstI	GAGCTC	1 cut(s)	591
StyD4I	CCNGG	4 cut(s)	465, 557, 730, 818
StyI	CCWWGG	1 cut(s)	152
TaaI	ACNGT	2 cut(s)	138, 319
TaqI	TCGA	4 cut(s)	66, 235, 856, 866
TasI	AATT	3 cut(s)	6, 131, 609
TauI	GCSGC	3 cut(s)	207, 292, 672
Tru1I	TTAA	3 cut(s)	159, 273, 840
Tru9I	TTAA	3 cut(s)	159, 273, 840
TscAI	CASTG	4 cut(s)	255, 316, 371, 598
TseI	GCWGC	2 cut(s)	482, 542
TspDTI	ATGAA	4 cut(s)	17, 288, 621, 678
TspGWI	ACGGA	1 cut(s)	244
TspRI	CASTG	4 cut(s)	255, 316, 371, 598
VneI	GTGCAC	1 cut(s)	789
XceI	RCATGY	1 cut(s)	438
XmaJI	CCTAGG	1 cut(s)	152
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	2 cut(s)	153, 828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.