Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003499.1

Orthogroup ID

OG0007424

Physical Location & Seq

Genomic Coordinates Forward (+)

56255 .. 57386

Gene Structure 1132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003499.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atgacaaaaacgtcctcctaccgctggcctgcgggtggaggtttcaagagggaagagcctcaaggtcatagggtcctcccctccacactgagaagagcgagccaaacaatgtcgtttgctctgaaattgaatctctcaaaccctagaatcaaacccaactccaacttcggaggcctcgccggtaccgccactaatccccaccgtctcccctaccatctcagactccccgcacggcggttcaactccttttccgtacagtcagagtatgttaacggagcttcagagccgtcaatttcatcgcattacacagagagcatcggaaccccatcaccttcgtcccaccttcttcagtggaacctcacccaacgacacgtcgtcgtcctcaatgtcgttgcttgcgctgcggcggtttctgcaacgtggctcttctgttctgcaattccaacgcttctggctttcaagagagcagctgattcacttgcaaagctgatggatgttatgagggaagagcttccggatacaatggcggctgttcgcttatccgggatggagatcagtgacctaaccatggagctcagtgatcttggccaggagattacacaaggtgttaggagttctactcgagctgttcgtgtggcggaggacaggttgcgccgcttgacaaacatggcccctacaggaagtagcaagtccgaaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

25.57

Weight (kDa)

10.13

Isoelectric Point (pI)

58.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09995 AT5G09995 AT5G09995
fragaria_vesca	FvH4_1g22170 FvH4_1g22170 FvH4_1g22170
malus_domestica	MD01G1018800.v1.1 MD15G1333500.v1.1
prunus_persica	Prupe.6G174000_v2.0.a1 Prupe.6G174000_v2.0.a1 Prupe.6G174000_v2.0.a1
pyrus_communis	pycom01g04870 pycom15g29200
rosa_chinensis	RchiOBHm_Chr2g0116241
rosa_laevigata	RLG00000018250
rosa_multiflora	Rmu_sc0003499.1_g000013 Rmu_sc0004888.1_g000063
rosa_roxburghii	Rroxscaffold_2G00127400
rosa_rugosa	Rorug02G0205100 Rorug02G0205200
rosa_samantha	Rh2AG260700 Rh2BG271800 Rh2CG266900 Rh2DG268900
rosa_wichuraiana	Rw2G020440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
Acc65I	GGTACC	1 cut(s)	182
AccB1I	GGYRCC	1 cut(s)	182
AccIII	TCCGGA	1 cut(s)	514
AcoI	YGGCCR	1 cut(s)	586
AcuI	CTGAAG	2 cut(s)	264, 332
AdeI	CACNNNGTG	1 cut(s)	605
AfaI	GTAC	2 cut(s)	184, 255
AfiI	CCNNNNNNNGG	4 cut(s)	24, 35, 234, 568
AflIII	ACRYGT	1 cut(s)	370
AgsI	TTSAA	4 cut(s)	46, 130, 241, 460
AhdI	GACNNNNNGTC	1 cut(s)	374
AjiI	CACGTC	1 cut(s)	373
AjnI	CCWGG	1 cut(s)	588
AjuI	GAANNNNNNNTTGG	2 cut(s)	149, 181
AluBI	AGCT	6 cut(s)	278, 470, 487, 511, 574, 626
AluI	AGCT	6 cut(s)	278, 470, 487, 511, 574, 626
Alw21I	GWGCWC	1 cut(s)	576
Alw26I	GTCTC	1 cut(s)	209
Ama87I	CYCGRG	1 cut(s)	621
Aor13HI	TCCGGA	1 cut(s)	514
AoxI	GGCC	4 cut(s)	26, 172, 586, 669
ApeKI	GCWGC	2 cut(s)	401, 467
Asp700I	GAANNNNTTC	1 cut(s)	510
Asp718I	GGTACC	1 cut(s)	182
AspLEI	GCGC	2 cut(s)	401, 654
AspS9I	GGNCC	2 cut(s)	73, 670
AsuC2I	CCSGG	1 cut(s)	544
AsuHPI	GGTGA	2 cut(s)	321, 352
AvaI	CYCGRG	1 cut(s)	621
AvaII	GGWCC	1 cut(s)	73
BalI	TGGCCA	1 cut(s)	588
BanI	GGYRCC	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	576
Bbv12I	GWGCWC	1 cut(s)	576
BbvI	GCAGC	2 cut(s)	388, 479
BccI	CCATC	4 cut(s)	222, 334, 484, 541
BceAI	ACGGC	2 cut(s)	248, 271
BciT130I	CCWGG	1 cut(s)	590
BciVI	GTATCC	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	544
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	1 cut(s)	144
BfmI	CTRYAG	1 cut(s)	675
BfuI	GTATCC	1 cut(s)	511
BisI	GCNGC	5 cut(s)	402, 405, 468, 528, 655
BlsI	GCNGC	5 cut(s)	403, 406, 469, 529, 656
Bme1390I	CCNGG	2 cut(s)	544, 590
Bme18I	GGWCC	1 cut(s)	73
BmeRI	GACNNNNNGTC	1 cut(s)	374
BmeT110I	CYCGRG	1 cut(s)	621
BmgBI	CACGTC	1 cut(s)	373
BmgT120I	GGNCC	2 cut(s)	73, 670
BmiI	GGNNCC	5 cut(s)	74, 184, 322, 356, 672
BmrFI	CCNGG	2 cut(s)	544, 590
BmsI	GCATC	1 cut(s)	324
BplI	GAGNNNNNCTC	2 cut(s)	604, 636
BpuEI	CTTGAG	1 cut(s)	45
BpuMI	CCSGG	1 cut(s)	544
BsaBI	GATNNNNATC	1 cut(s)	551
BsaJI	CCNNGG	1 cut(s)	567
BsaWI	WCCGGW	1 cut(s)	514
BsaXI	ACNNNNNCTCC	2 cut(s)	632, 662
Bsc4I	CCNNNNNNNGG	4 cut(s)	24, 35, 234, 568
Bse118I	RCCGGY	1 cut(s)	179
Bse8I	GATNNNNATC	1 cut(s)	551
BseAI	TCCGGA	1 cut(s)	514
BseBI	CCWGG	1 cut(s)	590
BseDI	CCNNGG	1 cut(s)	567
BseGI	GGATG	2 cut(s)	499, 552
BseJI	GATNNNNATC	1 cut(s)	551
BseLI	CCNNNNNNNGG	4 cut(s)	24, 35, 234, 568
BseMII	CTCAG	3 cut(s)	80, 232, 589
BseXI	GCAGC	2 cut(s)	388, 479
BshFI	GGCC	4 cut(s)	28, 174, 588, 671
BshNI	GGYRCC	1 cut(s)	182
BsiHKAI	GWGCWC	1 cut(s)	576
BsiHKCI	CYCGRG	1 cut(s)	621
BsiSI	CCGG	3 cut(s)	180, 515, 543
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	4 cut(s)	24, 35, 234, 568
BsmAI	GTCTC	1 cut(s)	209
BsmBI	CGTCTC	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	322
BsnI	GGCC	4 cut(s)	28, 174, 588, 671
BsoBI	CYCGRG	1 cut(s)	621
Bsp1286I	GDGCHC	1 cut(s)	576
Bsp13I	TCCGGA	1 cut(s)	514
Bsp143I	GATC	2 cut(s)	552, 580
Bsp19I	CCATGG	1 cut(s)	567
BspANI	GGCC	4 cut(s)	28, 174, 588, 671
BspCNI	CTCAG	3 cut(s)	81, 231, 588
BspEI	TCCGGA	1 cut(s)	514
BspLI	GGNNCC	5 cut(s)	74, 184, 322, 356, 672
BspQI	GCTCTTC	4 cut(s)	48, 88, 431, 501
BspT107I	GGYRCC	1 cut(s)	182
BsrFI	RCCGGY	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	567
BssMI	GATC	2 cut(s)	552, 580
BssT1I	CCWWGG	1 cut(s)	567
Bst2UI	CCWGG	1 cut(s)	590
Bst4CI	ACNGT	2 cut(s)	203, 258
Bst6I	CTCTTC	4 cut(s)	48, 88, 431, 501
BstC8I	GCNNGC	4 cut(s)	26, 30, 100, 397
BstDEI	CTNAG	3 cut(s)	89, 218, 575
BstDSI	CCRYGG	1 cut(s)	567
BstF5I	GGATG	2 cut(s)	499, 552
BstHHI	GCGC	2 cut(s)	401, 654
BstKTI	GATC	2 cut(s)	555, 583
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	2 cut(s)	552, 580
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 401, 413
BstNI	CCWGG	1 cut(s)	590
BstSCI	CCNGG	2 cut(s)	542, 588
BstSFI	CTRYAG	1 cut(s)	675
BstV1I	GCAGC	2 cut(s)	388, 479
BsuI	GTATCC	1 cut(s)	511
BsuRI	GGCC	4 cut(s)	28, 174, 588, 671
BtgI	CCRYGG	1 cut(s)	567
BtgZI	GCGATG	1 cut(s)	282
BtrI	CACGTC	1 cut(s)	373
BtsCI	GGATG	2 cut(s)	499, 552
BtsIMutI	CAGTG	4 cut(s)	86, 356, 562, 583
Cac8I	GCNNGC	4 cut(s)	26, 30, 100, 397
CfoI	GCGC	2 cut(s)	401, 654
Cfr10I	RCCGGY	1 cut(s)	179
Cfr13I	GGNCC	2 cut(s)	73, 670
Csp6I	GTAC	2 cut(s)	183, 254
CviAII	CATG	2 cut(s)	568, 667
CviQI	GTAC	2 cut(s)	183, 254
DdeI	CTNAG	3 cut(s)	89, 218, 575
DpnI	GATC	2 cut(s)	554, 582
DpnII	GATC	2 cut(s)	552, 580
DraIII	CACNNNGTG	1 cut(s)	605
DrdI	GACNNNNNNGTC	1 cut(s)	10
DriI	GACNNNNNGTC	1 cut(s)	374
DseDI	GACNNNNNNGTC	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	586
Eam1104I	CTCTTC	4 cut(s)	48, 88, 431, 501
Eam1105I	GACNNNNNGTC	1 cut(s)	374
EarI	CTCTTC	4 cut(s)	48, 88, 431, 501
EciI	GGCGGA	1 cut(s)	653
Ecl136II	GAGCTC	1 cut(s)	574
Eco130I	CCWWGG	1 cut(s)	567
Eco147I	AGGCCT	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	576
Eco47I	GGWCC	1 cut(s)	73
Eco53kI	GAGCTC	1 cut(s)	574
Eco57I	CTGAAG	2 cut(s)	264, 332
Eco88I	CYCGRG	1 cut(s)	621
EcoICRI	GAGCTC	1 cut(s)	574
EcoO109I	RGGNCCY	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	588
EcoT14I	CCWWGG	1 cut(s)	567
EcoT38I	GRGCYC	1 cut(s)	576
ErhI	CCWWGG	1 cut(s)	567
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	2 cut(s)	571, 670
FaiI	YATR	5 cut(s)	69, 267, 500, 569, 668
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	2 cut(s)	567, 666
FauI	CCCGC	2 cut(s)	25, 235
Fnu4HI	GCNGC	5 cut(s)	402, 405, 468, 528, 655
FokI	GGATG	2 cut(s)	506, 559
FriOI	GRGCYC	1 cut(s)	576
Fsp4HI	GCNGC	5 cut(s)	402, 405, 468, 528, 655
FspBI	CTAG	1 cut(s)	144
GlaI	GCGC	2 cut(s)	400, 653
GluI	GCNGC	5 cut(s)	402, 405, 468, 528, 655
HaeIII	GGCC	4 cut(s)	28, 174, 588, 671
HapII	CCGG	3 cut(s)	180, 515, 543
HhaI	GCGC	2 cut(s)	401, 654
Hin1II	CATG	2 cut(s)	571, 670
Hin6I	GCGC	2 cut(s)	399, 652
HinP1I	GCGC	2 cut(s)	399, 652
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	4 cut(s)	130, 147, 222, 473
HpaI	GTTAAC	1 cut(s)	271
HpaII	CCGG	3 cut(s)	180, 515, 543
HphI	GGTGA	2 cut(s)	321, 352
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	7 cut(s)	123, 170, 221, 262, 283, 320, 694
Hpy188III	TCNNGA	3 cut(s)	46, 460, 515
Hpy8I	GTNNAC	1 cut(s)	271
Hpy99I	CGWCG	2 cut(s)	377, 380
HpyAV	CCTTC	2 cut(s)	342, 353
HpyCH4III	ACNGT	2 cut(s)	203, 258
HpyCH4IV	ACGT	3 cut(s)	11, 372, 419
HpyCH4V	TGCA	3 cut(s)	416, 437, 482
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 401, 413
HpyF3I	CTNAG	3 cut(s)	89, 218, 575
HpySE526I	ACGT	3 cut(s)	11, 372, 419
Hsp92II	CATG	2 cut(s)	571, 670
HspAI	GCGC	2 cut(s)	399, 652
Kpn2I	TCCGGA	1 cut(s)	514
KpnI	GGTACC	1 cut(s)	186
KspAI	GTTAAC	1 cut(s)	271
Kzo9I	GATC	2 cut(s)	552, 580
LguI	GCTCTTC	4 cut(s)	48, 88, 431, 501
LmnI	GCTCC	2 cut(s)	275, 571
Lsp1109I	GCAGC	2 cut(s)	388, 479
LweI	GCATC	1 cut(s)	324
MaeI	CTAG	1 cut(s)	144
MaeII	ACGT	3 cut(s)	11, 372, 419
MaeIII	GTNAC	1 cut(s)	557
MalI	GATC	2 cut(s)	554, 582
MboI	GATC	2 cut(s)	552, 580
MboII	GAAGA	5 cut(s)	65, 105, 338, 418, 518
MhlI	GDGCHC	1 cut(s)	576
MlsI	TGGCCA	1 cut(s)	588
MluCI	AATT	3 cut(s)	125, 291, 438
MluNI	TGGCCA	1 cut(s)	588
MlyI	GAGTC	1 cut(s)	216
MmeI	TCCRAC	2 cut(s)	186, 467
Mox20I	TGGCCA	1 cut(s)	588
MroI	TCCGGA	1 cut(s)	514
MroXI	GAANNNNTTC	1 cut(s)	510
MscI	TGGCCA	1 cut(s)	588
MseI	TTAA	1 cut(s)	270
Msp20I	TGGCCA	1 cut(s)	588
MspA1I	CMGCKG	2 cut(s)	24, 470
MspI	CCGG	3 cut(s)	180, 515, 543
MspR9I	CCNGG	2 cut(s)	544, 590
MvaI	CCWGG	1 cut(s)	590
MwoI	GCNNNNNNNGC	3 cut(s)	185, 401, 413
NciI	CCSGG	1 cut(s)	544
NcoI	CCATGG	1 cut(s)	567
NdeII	GATC	2 cut(s)	552, 580
NlaIII	CATG	2 cut(s)	571, 670
NlaIV	GGNNCC	5 cut(s)	74, 184, 322, 356, 672
NmuCI	GTSAC	1 cut(s)	557
PaeR7I	CTCGAG	1 cut(s)	621
PceI	AGGCCT	1 cut(s)	174
PciSI	GCTCTTC	4 cut(s)	48, 88, 431, 501
PcsI	WCGNNNNNNNCGW	1 cut(s)	628
PdmI	GAANNNNTTC	1 cut(s)	510
PfeI	GAWTC	3 cut(s)	130, 147, 473
PfoI	TCCNGGA	1 cut(s)	542
PkrI	GCNGC	5 cut(s)	403, 406, 469, 529, 656
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
PpuMI	RGGWCCY	1 cut(s)	73
Psp124BI	GAGCTC	1 cut(s)	576
Psp5II	RGGWCCY	1 cut(s)	73
Psp6I	CCWGG	1 cut(s)	588
PspGI	CCWGG	1 cut(s)	588
PspN4I	GGNNCC	5 cut(s)	74, 184, 322, 356, 672
PspPI	GGNCC	2 cut(s)	73, 670
PspPPI	RGGWCCY	1 cut(s)	73
PspXI	VCTCGAGB	1 cut(s)	621
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	2 cut(s)	184, 255
RsaNI	GTAC	2 cut(s)	183, 254
SacI	GAGCTC	1 cut(s)	576
SapI	GCTCTTC	4 cut(s)	48, 88, 431, 501
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	5 cut(s)	402, 405, 468, 528, 655
Sau3AI	GATC	2 cut(s)	552, 580
Sau96I	GGNCC	2 cut(s)	73, 670
SchI	GAGTC	1 cut(s)	216
ScrFI	CCNGG	2 cut(s)	544, 590
SduI	GDGCHC	1 cut(s)	576
SfaNI	GCATC	1 cut(s)	324
SfcI	CTRYAG	1 cut(s)	675
Sfr274I	CTCGAG	1 cut(s)	621
SinI	GGWCC	1 cut(s)	73
SlaI	CTCGAG	1 cut(s)	621
SmlI	CTYRAG	2 cut(s)	60, 621
SmoI	CTYRAG	2 cut(s)	60, 621
Sse9I	AATT	3 cut(s)	125, 291, 438
SseBI	AGGCCT	1 cut(s)	174
SspMI	CTAG	1 cut(s)	144
SstI	GAGCTC	1 cut(s)	576
StuI	AGGCCT	1 cut(s)	174
StyD4I	CCNGG	2 cut(s)	542, 588
StyI	CCWWGG	1 cut(s)	567
TaaI	ACNGT	2 cut(s)	203, 258
TaiI	ACGT	3 cut(s)	14, 375, 422
TaqI	TCGA	1 cut(s)	622
TasI	AATT	3 cut(s)	125, 291, 438
TauI	GCSGC	3 cut(s)	407, 530, 657
TfiI	GAWTC	3 cut(s)	130, 147, 473
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	4 cut(s)	93, 356, 562, 583
TseFI	GTSAC	1 cut(s)	557
TseI	GCWGC	2 cut(s)	401, 467
Tsp45I	GTSAC	1 cut(s)	557
TspDTI	ATGAA	1 cut(s)	285
TspGWI	ACGGA	2 cut(s)	241, 288
TspRI	CASTG	4 cut(s)	93, 356, 562, 583
VpaK11BI	GGWCC	1 cut(s)	73
XhoI	CTCGAG	1 cut(s)	621
XmnI	GAANNNNTTC	1 cut(s)	510
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.