Rorug02G0205200

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0007424
Physical Location & Seq
Reverse (-)
19249030 .. 19253389
4360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0205200.1

Sequence Viewer

Length: 978 bp
ATGATTTGCAGGAGTTCTCATCTGCGGATGGAGGAGACCGAGCTCGCTAGAAGCAGCTCATTCTTTTACCTGAGAACCTGCCCTTCAACAACACCATCTCTCCCTTTGACCTATACTAGAGTGCCCTATGTTGGTATACACATACCTCCTAGGCACAAGTATCGGAAGCACAAGACTCGTATCGCCTATATACCCGTATCCCCTAGACGCCAGCTGGGGATTCCGATACCCCTTGGGGCGATATCTGGATCCCAAGCGTCCCACACCGAAAGAAACGGAGCCAAGCTCCCACAAACTGGCTACATTAAGAGATTGTTCACTGTTGAAGAATTGGCTTTGTACAATGGGACTGATCAAAGTTTGCCAATCTTGTTAGGAATTCTCCGATCGGTTTTTGACGTGACGAAAGGAAAGTCTCATTACGGTGAGGGTGGGGGTTATAATCATTTTTCTGGAAGGTGTGTGCCTGTTGTTAATTTTGGGATTCTACTCGGTTATCAAGTCAAAAAGAATGTTGTAGATAAAAAGATTGCATTGTATACTGGTATAAGTGAGAAGGATCAATCATGGAAGAGCCATAATGTTGTAGATTATAATGAAAAAGTGGTGGATGGATTTTACGATGTGTATGGAATTACCTCGAATTCCTTTAGACAAGGGAAGATGCCGTTGTTGGTGGAATTTCAAGCTGTATCAGTTTCAGATAATGTCGACTACGATGTCATATTAGTTAACAGGTTTGTTGATACTGAACTCCAACAACTCGAGAAAAGAGCATATGTTGCATCTCTAGAGTGGATTTCTCAACATGGTCTACTTTTAAGTGGCTTGATTCAGAAGATTGCTGATATTGTTGTTGATAGAATGGGTGGTCCAGTTGGAGATGCGGATGAGATTTTAAGAAGGTGGAAAATAAGGAGGCATGAGTTGCGGAGTTCAATGAACATGCACTATCATTCTTCCCCTCGGAAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

325

Amino Acids

36.85

Weight (kDa)

9.56

Isoelectric Point (pI)

55.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR1_CTR1_ARMC3_pept PF14381 192 - 316 8e-30 EDR1/CTR1/ARMC3, peptidase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 441, 594
AasI GACNNNNNNGTC 1 cut(s) 719
Acc36I ACCTGC 1 cut(s) 86
AccB7I CCANNNNNTGG 1 cut(s) 296
AccI GTMKAC 4 cut(s) 136, 539, 711, 814
AciI CCGC 3 cut(s) 25, 887, 931
AclWI GGATC 3 cut(s) 243, 256, 567
AcsI RAATTY 3 cut(s) 378, 643, 680
AcyI GRCGYC 1 cut(s) 208
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 2 cut(s) 131, 296
AgsI TTSAA 4 cut(s) 87, 326, 686, 939
AjiI CACGTC 1 cut(s) 400
AluBI AGCT 5 cut(s) 43, 57, 214, 286, 689
AluI AGCT 5 cut(s) 43, 57, 214, 286, 689
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 2 cut(s) 29, 420
AlwI GGATC 3 cut(s) 243, 256, 567
Ama87I CYCGRG 1 cut(s) 764
ApeKI GCWGC 1 cut(s) 54
ApoI RAATTY 3 cut(s) 378, 643, 680
ArsI GACNNNNNNTTYG 2 cut(s) 398, 430
AspA2I CCTAGG 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 872
AsuHPI GGTGA 1 cut(s) 437
AvaI CYCGRG 1 cut(s) 764
AvaII GGWCC 1 cut(s) 872
AvrII CCTAGG 1 cut(s) 149
BaeGI GKGCMC 1 cut(s) 126
BamHI GGATCC 1 cut(s) 248
BanII GRGCYC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 66
BccI CCATC 3 cut(s) 22, 103, 605
BceAI ACGGC 1 cut(s) 652
BcgI CGANNNNNNTGC 4 cut(s) 143, 158, 177, 192
BciVI GTATCC 1 cut(s) 208
BclI TGATCA 1 cut(s) 352
BcoDI GTCTC 2 cut(s) 29, 420
BfaI CTAG 5 cut(s) 48, 117, 150, 204, 791
BfuAI ACCTGC 1 cut(s) 86
BfuI GTATCC 1 cut(s) 208
BisI GCNGC 1 cut(s) 55
BlnI CCTAGG 1 cut(s) 149
BlsI GCNGC 1 cut(s) 56
Bme18I GGWCC 1 cut(s) 872
BmeT110I CYCGRG 1 cut(s) 764
BmgBI CACGTC 1 cut(s) 400
BmgT120I GGNCC 1 cut(s) 872
BmiI GGNNCC 2 cut(s) 250, 280
BmsI GCATC 3 cut(s) 654, 794, 874
BplI GAGNNNNNCTC 2 cut(s) 270, 302
BsaHI GRCGYC 1 cut(s) 208
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 3 cut(s) 149, 232, 965
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 296
Bse1I ACTGG 3 cut(s) 301, 547, 875
BseDI CCNNGG 3 cut(s) 149, 232, 965
BseGI GGATG 3 cut(s) 33, 616, 895
BseLI CCNNNNNNNGG 2 cut(s) 131, 296
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 3 cut(s) 301, 547, 875
BseRI GAGGAG 1 cut(s) 47
BseSI GKGCMC 1 cut(s) 126
BseXI GCAGC 1 cut(s) 66
BseYI CCCAGC 1 cut(s) 214
Bsh1285I CGRYCG 1 cut(s) 389
BsiEI CGRYCG 1 cut(s) 389
BsiHKAI GWGCWC 1 cut(s) 45
BsiHKCI CYCGRG 1 cut(s) 764
BslFI GGGAC 2 cut(s) 244, 361
BslI CCNNNNNNNGG 2 cut(s) 131, 296
BsmAI GTCTC 2 cut(s) 29, 420
BsmFI GGGAC 2 cut(s) 244, 361
Bso31I GGTCTC 1 cut(s) 29
BsoBI CYCGRG 1 cut(s) 764
Bsp1286I GDGCHC 2 cut(s) 45, 126
Bsp1407I TGTACA 1 cut(s) 339
Bsp143I GATC 4 cut(s) 248, 352, 386, 559
BspACI CCGC 3 cut(s) 25, 887, 931
BspCNI CTCAG 1 cut(s) 63
BspLI GGNNCC 2 cut(s) 250, 280
BspMI ACCTGC 1 cut(s) 86
BspPI GGATC 3 cut(s) 243, 256, 567
BspQI GCTCTTC 1 cut(s) 566
BspTNI GGTCTC 1 cut(s) 29
BsrGI TGTACA 1 cut(s) 339
BsrI ACTGG 3 cut(s) 301, 547, 875
BssECI CCNNGG 3 cut(s) 149, 232, 965
BssMI GATC 4 cut(s) 248, 352, 386, 559
BssNAI GTATAC 2 cut(s) 137, 540
BssNI GRCGYC 1 cut(s) 208
BssT1I CCWWGG 2 cut(s) 149, 232
Bst1107I GTATAC 2 cut(s) 137, 540
Bst4CI ACNGT 2 cut(s) 322, 425
Bst6I CTCTTC 1 cut(s) 566
BstACI GRCGYC 1 cut(s) 208
BstAPI GCANNNNNTGC 2 cut(s) 782, 928
BstAUI TGTACA 1 cut(s) 339
BstC8I GCNNGC 2 cut(s) 45, 212
BstDEI CTNAG 1 cut(s) 71
BstF5I GGATG 3 cut(s) 33, 616, 895
BstKTI GATC 4 cut(s) 251, 355, 389, 562
BstMAI GTCTC 2 cut(s) 29, 420
BstMBI GATC 4 cut(s) 248, 352, 386, 559
BstMCI CGRYCG 1 cut(s) 389
BstMWI GCNNNNNNNGC 2 cut(s) 782, 928
BstNSI RCATGY 1 cut(s) 949
BstSLI GKGCMC 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 66
BstX2I RGATCY 1 cut(s) 248
BstYI RGATCY 1 cut(s) 248
BstZ17I GTATAC 2 cut(s) 137, 540
BsuI GTATCC 1 cut(s) 208
BtrI CACGTC 1 cut(s) 400
BtsCI GGATG 3 cut(s) 33, 616, 895
BtsIMutI CAGTG 1 cut(s) 318
BveI ACCTGC 1 cut(s) 86
Cac8I GCNNGC 2 cut(s) 45, 212
Cfr13I GGNCC 1 cut(s) 872
CseI GACGC 2 cut(s) 216, 246
Csp6I GTAC 1 cut(s) 340
CviAII CATG 4 cut(s) 567, 809, 923, 946
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 1 cut(s) 71
DpnI GATC 4 cut(s) 250, 354, 388, 561
DpnII GATC 4 cut(s) 248, 352, 386, 559
DrdI GACNNNNNNGTC 1 cut(s) 719
DseDI GACNNNNNNGTC 1 cut(s) 719
Eam1104I CTCTTC 1 cut(s) 566
EarI CTCTTC 1 cut(s) 566
Ecl136II GAGCTC 1 cut(s) 43
Eco130I CCWWGG 2 cut(s) 149, 232
Eco24I GRGCYC 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 29
Eco32I GATATC 1 cut(s) 243
Eco47I GGWCC 1 cut(s) 872
Eco53kI GAGCTC 1 cut(s) 43
Eco88I CYCGRG 1 cut(s) 764
EcoICRI GAGCTC 1 cut(s) 43
EcoRI GAATTC 2 cut(s) 378, 643
EcoRV GATATC 1 cut(s) 243
EcoT14I CCWWGG 2 cut(s) 149, 232
EcoT38I GRGCYC 1 cut(s) 45
ErhI CCWWGG 2 cut(s) 149, 232
FaeI CATG 4 cut(s) 570, 812, 926, 949
FaqI GGGAC 2 cut(s) 244, 361
FatI CATG 4 cut(s) 566, 808, 922, 945
FauNDI CATATG 1 cut(s) 778
FbaI TGATCA 1 cut(s) 352
FblI GTMKAC 4 cut(s) 136, 539, 711, 814
Fnu4HI GCNGC 1 cut(s) 55
FokI GGATG 3 cut(s) 40, 623, 902
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 55
FspBI CTAG 5 cut(s) 48, 117, 150, 204, 791
GluI GCNGC 1 cut(s) 55
GsaI CCCAGC 1 cut(s) 218
HgaI GACGC 2 cut(s) 216, 246
Hin1I GRCGYC 1 cut(s) 208
Hin1II CATG 4 cut(s) 570, 812, 926, 949
HincII GTYRAC 2 cut(s) 712, 733
HindII GTYRAC 2 cut(s) 712, 733
HinfI GANTC 4 cut(s) 175, 220, 484, 832
HpaI GTTAAC 1 cut(s) 733
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 6 cut(s) 137, 318, 540, 712, 733, 815
Hpy188I TCNGA 6 cut(s) 165, 225, 386, 703, 837, 969
Hpy188III TCNNGA 4 cut(s) 246, 453, 766, 791
Hpy8I GTNNAC 6 cut(s) 137, 318, 540, 712, 733, 815
HpyAV CCTTC 4 cut(s) 93, 450, 550, 897
HpyCH4III ACNGT 2 cut(s) 322, 425
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 4 cut(s) 9, 533, 785, 949
HpyF10VI GCNNNNNNNGC 2 cut(s) 782, 928
HpyF3I CTNAG 1 cut(s) 71
HpySE526I ACGT 1 cut(s) 399
Hsp92I GRCGYC 1 cut(s) 208
Hsp92II CATG 4 cut(s) 570, 812, 926, 949
Ksp22I TGATCA 1 cut(s) 352
KspAI GTTAAC 1 cut(s) 733
Kzo9I GATC 4 cut(s) 248, 352, 386, 559
LguI GCTCTTC 1 cut(s) 566
LmnI GCTCC 2 cut(s) 278, 291
Lsp1109I GCAGC 1 cut(s) 66
LweI GCATC 3 cut(s) 654, 794, 874
MaeI CTAG 5 cut(s) 48, 117, 150, 204, 791
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 1 cut(s) 400
MalI GATC 4 cut(s) 250, 354, 388, 561
MboI GATC 4 cut(s) 248, 352, 386, 559
MboII GAAGA 5 cut(s) 338, 583, 673, 850, 951
MflI RGATCY 1 cut(s) 248
MhlI GDGCHC 2 cut(s) 45, 126
MluCI AATT 7 cut(s) 329, 378, 475, 633, 643, 680, 973
MlyI GAGTC 1 cut(s) 169
MmeI TCCRAC 2 cut(s) 781, 859
MnlI CCTC 6 cut(s) 25, 156, 421, 649, 912, 975
MseI TTAA 5 cut(s) 306, 474, 732, 821, 899
MslI CAYNNNNRTG 1 cut(s) 423
MspA1I CMGCKG 1 cut(s) 214
MwoI GCNNNNNNNGC 2 cut(s) 782, 928
NdeI CATATG 1 cut(s) 778
NdeII GATC 4 cut(s) 248, 352, 386, 559
NlaIII CATG 4 cut(s) 570, 812, 926, 949
NlaIV GGNNCC 2 cut(s) 250, 280
NmuCI GTSAC 1 cut(s) 400
NspI RCATGY 1 cut(s) 949
PaeR7I CTCGAG 1 cut(s) 764
PciSI GCTCTTC 1 cut(s) 566
PfeI GAWTC 3 cut(s) 220, 484, 832
PflMI CCANNNNNTGG 1 cut(s) 296
PkrI GCNGC 1 cut(s) 56
Ple19I CGATCG 1 cut(s) 389
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
PsiI TTATAA 2 cut(s) 441, 594
Psp124BI GAGCTC 1 cut(s) 45
PspFI CCCAGC 1 cut(s) 214
PspN4I GGNNCC 2 cut(s) 250, 280
PspPI GGNCC 1 cut(s) 872
PsuI RGATCY 1 cut(s) 248
PvuI CGATCG 1 cut(s) 389
PvuII CAGCTG 1 cut(s) 214
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
RseI CAYNNNNRTG 1 cut(s) 423
SacI GAGCTC 1 cut(s) 45
SalI GTCGAC 1 cut(s) 710
SapI GCTCTTC 1 cut(s) 566
SaqAI TTAA 5 cut(s) 306, 474, 732, 821, 899
SatI GCNGC 1 cut(s) 55
Sau3AI GATC 4 cut(s) 248, 352, 386, 559
Sau96I GGNCC 1 cut(s) 872
SchI GAGTC 1 cut(s) 169
SduI GDGCHC 2 cut(s) 45, 126
SfaNI GCATC 3 cut(s) 654, 794, 874
Sfr274I CTCGAG 1 cut(s) 764
SinI GGWCC 1 cut(s) 872
SlaI CTCGAG 1 cut(s) 764
SmiMI CAYNNNNRTG 1 cut(s) 423
SmlI CTYRAG 1 cut(s) 764
SmoI CTYRAG 1 cut(s) 764
Sse9I AATT 7 cut(s) 329, 378, 475, 633, 643, 680, 973
SsiI CCGC 3 cut(s) 25, 887, 931
SspMI CTAG 5 cut(s) 48, 117, 150, 204, 791
SstI GAGCTC 1 cut(s) 45
StyI CCWWGG 2 cut(s) 149, 232
TaaI ACNGT 2 cut(s) 322, 425
TaiI ACGT 1 cut(s) 402
TaqI TCGA 3 cut(s) 641, 711, 765
TaqII GACCGA 1 cut(s) 53
TasI AATT 7 cut(s) 329, 378, 475, 633, 643, 680, 973
TatI WGTACW 1 cut(s) 339
TfiI GAWTC 3 cut(s) 220, 484, 832
Tru1I TTAA 5 cut(s) 306, 474, 732, 821, 899
Tru9I TTAA 5 cut(s) 306, 474, 732, 821, 899
TscAI CASTG 1 cut(s) 325
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 1 cut(s) 54
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 2 cut(s) 612, 956
TspGWI ACGGA 1 cut(s) 291
TspRI CASTG 1 cut(s) 325
Van91I CCANNNNNTGG 1 cut(s) 296
VpaK11BI GGWCC 1 cut(s) 872
XapI RAATTY 3 cut(s) 378, 643, 680
XbaI TCTAGA 1 cut(s) 790
XceI RCATGY 1 cut(s) 949
XhoI CTCGAG 1 cut(s) 764
XmaJI CCTAGG 1 cut(s) 149
XmiI GTMKAC 4 cut(s) 136, 539, 711, 814
XspI CTAG 5 cut(s) 48, 117, 150, 204, 791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.