Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010772

Physical Location & Seq

Genomic Coordinates Forward (+)

3232569 .. 3234277

Gene Structure 1709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G10280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGGAAGATCTCCTATCTCTGATGACTCTGGTCTCAAGAAAGGTCCTTGGACTCCTGATGAAGATGAGAAACTTGTCAACTATGTTCAAAAACATGGTCATAGTAGCTGGAGAGCCCTTCCCAAACTCGCTGGTCTTAACAGGTGTGGGAAGAGTTGCAGGCTAAGATGGACGAACTACTTGAGACCAGACATCAAGAGAGGGAGATTCTCTCCGGACGAGGAACAGACTATCTTGAATCTTCATTCAGTTCTTGGAAACAAGTGGTCAACGATTGCGAATCAGTTACCAGGGAGAACAGATAACGAGATCAAGAATTTCTGGAACACTCATTTGAAGAAGAAGCTGATTCAGATGGGTTTTGATCCAATGACTCACCGTCCAAGAACCGATATCTTCTCCGGCTTATCTCAGCTCATGTCTTTGTCTTCTAACCTGAGAGGCTTTGTTGATCTGCAACAACAGTTTCCTATTGATCAAGAACACACTATACTCAAACTCCAAACCGAGATGGCCAAACTCCAATTGTTCCAATACCTTCTTCAACCGTCTTCCATGAGTAACAATGTTAACCCTAATGACTTTGACACTCTCAGTCTCCTTAACTCTATTGCCTCTTTCAAAGAGACCAGTAATAATACCACCAGCAACAATCTCGACCTCGGTTTCCTCGGCTCTTATCTTCAGGACTTCCACAGCTTACCTTCCCTGAAAACCCTAAATTCCAACATGGAACCATCATCTGTTTTCCCCCAGAATCTTGATGACAATCACTTCAAATTCTCCACTCAAAGAGAAAACCTACCCGTGTCTCCAATCTGGCTCTCGGATCCATCCAGCACAACTCCTGCTCATGTGAATGATGATCTGATTTTTAACCAATACGGTATTGAAGATGTCAATAGCAATATCACATCTTCAAGCGGTCAAGAATCAGGAGCTTCAGCTTCAGCTGCATGGCCTGATCATCTATTGGATGATTCTATATTTTCCGACATTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

334

Amino Acids

37.65

Weight (kDa)

5.79

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	1.1e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	2.8e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	2e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 116	4e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10280 AT5G65230
fragaria_vesca	FvH4_1g20680
malus_domestica	MD01G1031700.v1.1 MD15G1323500.v1.1
prunus_persica	Prupe.6G188300_v2.0.a1
pyrus_communis	pycom01g05920 pycom15g28470
rosa_chinensis	RchiOBHm_Chr2g0113131
rosa_laevigata	RLG00000018046 RLG00000018792
rosa_multiflora	Rmu_sc0005949.1_g000025
rosa_roxburghii	Rroxscaffold_2G00129590 Rroxscaffold_2G00129720
rosa_rugosa	Rorug02G0185700
rosa_samantha	Rh2AG240000 Rh2BG253900 Rh2CG244000 Rh2DG247900
rosa_wichuraiana	Rw2G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	214
AciI	CCGC	1 cut(s)	924
AclWI	GGATC	3 cut(s)	359, 824, 837
AcoI	YGGCCR	1 cut(s)	513
AcsI	RAATTY	3 cut(s)	316, 721, 779
AcuI	CTGAAG	3 cut(s)	668, 927, 933
AgsI	TTSAA	8 cut(s)	89, 238, 337, 545, 622, 778, 893, 921
AhdI	GACNNNNNGTC	1 cut(s)	378
AjnI	CCWGG	1 cut(s)	289
AjuI	GAANNNNNNNTTGG	2 cut(s)	525, 557
AluBI	AGCT	7 cut(s)	108, 346, 415, 699, 941, 947, 953
AluI	AGCT	7 cut(s)	108, 346, 415, 699, 941, 947, 953
Alw26I	GTCTC	5 cut(s)	38, 178, 602, 620, 816
AlwI	GGATC	3 cut(s)	359, 824, 837
Aor13HI	TCCGGA	1 cut(s)	214
AoxI	GGCC	2 cut(s)	513, 959
ApeKI	GCWGC	1 cut(s)	953
ApoI	RAATTY	3 cut(s)	316, 721, 779
ArsI	GACNNNNNNTTYG	2 cut(s)	82, 114
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	515
BamHI	GGATCC	1 cut(s)	829
BanII	GRGCYC	1 cut(s)	118
BbsI	GAAGAC	2 cut(s)	420, 543
BbvI	GCAGC	1 cut(s)	940
BccI	CCATC	5 cut(s)	162, 349, 505, 745, 841
BcgI	CGANNNNNNTGC	2 cut(s)	637, 671
BciT130I	CCWGG	1 cut(s)	291
BclI	TGATCA	2 cut(s)	475, 964
BcoDI	GTCTC	5 cut(s)	38, 178, 602, 620, 816
BglII	AGATCT	1 cut(s)	8
BisI	GCNGC	1 cut(s)	954
BlsI	GCNGC	1 cut(s)	955
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	44
BmeRI	GACNNNNNGTC	1 cut(s)	378
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	2 cut(s)	735, 831
BmrFI	CCNGG	1 cut(s)	291
BoxI	GACNNNNGTC	1 cut(s)	30
BpiI	GAAGAC	2 cut(s)	420, 543
BplI	GAGNNNNNCTC	2 cut(s)	196, 228
BpmI	CTGGAG	1 cut(s)	130
BpuEI	CTTGAG	2 cut(s)	20, 202
BsaBI	GATNNNNATC	1 cut(s)	768
BsaI	GGTCTC	3 cut(s)	38, 178, 620
BsaJI	CCNNGG	4 cut(s)	47, 290, 661, 670
BsaWI	WCCGGW	1 cut(s)	214
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bse1I	ACTGG	1 cut(s)	630
Bse8I	GATNNNNATC	1 cut(s)	768
BseAI	TCCGGA	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	4 cut(s)	47, 290, 661, 670
BseGI	GGATG	2 cut(s)	833, 982
BseJI	GATNNNNATC	1 cut(s)	768
BseMII	CTCAG	3 cut(s)	425, 428, 607
BseNI	ACTGG	1 cut(s)	630
BseXI	GCAGC	1 cut(s)	940
BshFI	GGCC	2 cut(s)	515, 961
BsiSI	CCGG	2 cut(s)	215, 402
BsmAI	GTCTC	5 cut(s)	38, 178, 602, 620, 816
BsnI	GGCC	2 cut(s)	515, 961
Bso31I	GGTCTC	3 cut(s)	38, 178, 620
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp13I	TCCGGA	1 cut(s)	214
Bsp143I	GATC	8 cut(s)	8, 309, 364, 451, 475, 829, 865, 964
BspACI	CCGC	1 cut(s)	924
BspANI	GGCC	2 cut(s)	515, 961
BspCNI	CTCAG	3 cut(s)	424, 429, 606
BspEI	TCCGGA	1 cut(s)	214
BspLI	GGNNCC	2 cut(s)	735, 831
BspPI	GGATC	3 cut(s)	359, 824, 837
BspTNI	GGTCTC	3 cut(s)	38, 178, 620
BsrI	ACTGG	1 cut(s)	630
BssECI	CCNNGG	4 cut(s)	47, 290, 661, 670
BssMI	GATC	8 cut(s)	8, 309, 364, 451, 475, 829, 865, 964
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	4 cut(s)	380, 465, 549, 887
Bst6I	CTCTTC	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	5 cut(s)	164, 411, 437, 593, 1002
BstF5I	GGATG	2 cut(s)	833, 982
BstKTI	GATC	8 cut(s)	11, 312, 367, 454, 478, 832, 868, 967
BstMAI	GTCTC	5 cut(s)	38, 178, 602, 620, 816
BstMBI	GATC	8 cut(s)	8, 309, 364, 451, 475, 829, 865, 964
BstMWI	GCNNNNNNNGC	1 cut(s)	953
BstNI	CCWGG	1 cut(s)	291
BstPAI	GACNNNNGTC	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	289
BstV1I	GCAGC	1 cut(s)	940
BstV2I	GAAGAC	2 cut(s)	420, 543
BstX2I	RGATCY	2 cut(s)	8, 829
BstYI	RGATCY	2 cut(s)	8, 829
BsuRI	GGCC	2 cut(s)	515, 961
BtsCI	GGATG	2 cut(s)	833, 982
Cac8I	GCNNGC	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	44
CviAII	CATG	6 cut(s)	95, 418, 556, 730, 854, 957
DdeI	CTNAG	5 cut(s)	164, 411, 437, 593, 1002
DpnI	GATC	8 cut(s)	10, 311, 366, 453, 477, 831, 867, 966
DpnII	GATC	8 cut(s)	8, 309, 364, 451, 475, 829, 865, 964
DriI	GACNNNNNGTC	1 cut(s)	378
EaeI	YGGCCR	1 cut(s)	513
Eam1104I	CTCTTC	1 cut(s)	146
Eam1105I	GACNNNNNGTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	118
Eco31I	GGTCTC	3 cut(s)	38, 178, 620
Eco32I	GATATC	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	3 cut(s)	668, 927, 933
EcoO109I	RGGNCCY	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	289
EcoRV	GATATC	1 cut(s)	394
EcoT14I	CCWWGG	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	6 cut(s)	98, 421, 559, 733, 857, 960
FatI	CATG	6 cut(s)	94, 417, 555, 729, 853, 956
FbaI	TGATCA	2 cut(s)	475, 964
Fnu4HI	GCNGC	1 cut(s)	954
FokI	GGATG	2 cut(s)	820, 989
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	1 cut(s)	954
GluI	GCNGC	1 cut(s)	954
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	515, 961
HapII	CCGG	2 cut(s)	215, 402
Hin1II	CATG	6 cut(s)	98, 421, 559, 733, 857, 960
HincII	GTYRAC	3 cut(s)	79, 270, 571
HindII	GTYRAC	3 cut(s)	79, 270, 571
HpaI	GTTAAC	1 cut(s)	571
HpaII	CCGG	2 cut(s)	215, 402
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	3 cut(s)	79, 270, 571
Hpy188I	TCNGA	5 cut(s)	22, 354, 829, 870, 994
Hpy8I	GTNNAC	3 cut(s)	79, 270, 571
HpyAV	CCTTC	3 cut(s)	128, 548, 714
HpyCH4III	ACNGT	4 cut(s)	380, 465, 549, 887
HpyCH4V	TGCA	3 cut(s)	159, 457, 956
HpyF10VI	GCNNNNNNNGC	1 cut(s)	953
HpyF3I	CTNAG	5 cut(s)	164, 411, 437, 593, 1002
Hsp92II	CATG	6 cut(s)	98, 421, 559, 733, 857, 960
Kpn2I	TCCGGA	1 cut(s)	214
Ksp22I	TGATCA	2 cut(s)	475, 964
KspAI	GTTAAC	1 cut(s)	571
Kzo9I	GATC	8 cut(s)	8, 309, 364, 451, 475, 829, 865, 964
LmnI	GCTCC	1 cut(s)	938
Lsp1109I	GCAGC	1 cut(s)	940
MaeIII	GTNAC	2 cut(s)	285, 560
MalI	GATC	8 cut(s)	10, 311, 366, 453, 477, 831, 867, 966
MboI	GATC	8 cut(s)	8, 309, 364, 451, 475, 829, 865, 964
MfeI	CAATTG	1 cut(s)	524
MflI	RGATCY	2 cut(s)	8, 829
MhlI	GDGCHC	1 cut(s)	118
MlsI	TGGCCA	1 cut(s)	515
MluCI	AATT	4 cut(s)	316, 524, 721, 779
MluNI	TGGCCA	1 cut(s)	515
MlyI	GAGTC	3 cut(s)	20, 46, 367
MmeI	TCCRAC	1 cut(s)	750
MnlI	CCTC	6 cut(s)	194, 214, 434, 625, 671, 680
Mox20I	TGGCCA	1 cut(s)	515
MroI	TCCGGA	1 cut(s)	214
MscI	TGGCCA	1 cut(s)	515
MseI	TTAA	4 cut(s)	138, 570, 603, 876
MslI	CAYNNNNRTG	1 cut(s)	858
Msp20I	TGGCCA	1 cut(s)	515
MspA1I	CMGCKG	1 cut(s)	953
MspI	CCGG	2 cut(s)	215, 402
MspR9I	CCNGG	1 cut(s)	291
MunI	CAATTG	1 cut(s)	524
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	953
NdeII	GATC	8 cut(s)	8, 309, 364, 451, 475, 829, 865, 964
NlaIII	CATG	6 cut(s)	98, 421, 559, 733, 857, 960
NlaIV	GGNNCC	2 cut(s)	735, 831
NmeAIII	GCCGAG	1 cut(s)	651
PfeI	GAWTC	7 cut(s)	207, 238, 280, 349, 757, 932, 980
PkrI	GCNGC	1 cut(s)	955
PleI	GAGTC	3 cut(s)	20, 46, 367
PpsI	GAGTC	3 cut(s)	20, 46, 367
PpuMI	RGGWCCY	1 cut(s)	44
PshAI	GACNNNNGTC	1 cut(s)	30
Psp5II	RGGWCCY	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	2 cut(s)	735, 831
PspPI	GGNCC	1 cut(s)	44
PspPPI	RGGWCCY	1 cut(s)	44
PsrI	GAACNNNNNNTAC	2 cut(s)	474, 506
PsuI	RGATCY	2 cut(s)	8, 829
PvuII	CAGCTG	1 cut(s)	953
RseI	CAYNNNNRTG	1 cut(s)	858
SaqAI	TTAA	4 cut(s)	138, 570, 603, 876
SatI	GCNGC	1 cut(s)	954
Sau3AI	GATC	8 cut(s)	8, 309, 364, 451, 475, 829, 865, 964
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	3 cut(s)	20, 46, 367
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	118
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	858
SmlI	CTYRAG	2 cut(s)	35, 181
SmoI	CTYRAG	2 cut(s)	35, 181
Sse9I	AATT	4 cut(s)	316, 524, 721, 779
SsiI	CCGC	1 cut(s)	924
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	4 cut(s)	380, 465, 549, 887
TaqI	TCGA	1 cut(s)	657
TasI	AATT	4 cut(s)	316, 524, 721, 779
TfiI	GAWTC	7 cut(s)	207, 238, 280, 349, 757, 932, 980
Tru1I	TTAA	4 cut(s)	138, 570, 603, 876
Tru9I	TTAA	4 cut(s)	138, 570, 603, 876
TseI	GCWGC	1 cut(s)	953
TspDTI	ATGAA	2 cut(s)	75, 233
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	3 cut(s)	316, 721, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.