Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010772

Physical Location & Seq

Genomic Coordinates Forward (+)

19649762 .. 19651728

Gene Structure 1967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G188300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGGAAGGTCTCCTTGTTGTGATGAGAGTGGCCTCAAGAAAGGTCCCTGGACCCCTGAAGAAGATCAAAAGCTCATGAATTACATTCAGAAAAATGGCCATGGAAGCTGGAGAGCCCTTCCAAAACTTGCAGGCTTAAACAGATGCGGCAAGAGTTGCAGGTTACGATGGACAAACTACCTTAGGCCAGATATAAAGAGAGGGAAGTTTTCTCAAGAAGAAGAACAAACAATTCTGAACCTCCATTCCATCCTTGGCAACAAATGGTCAGCAATTGCAAGTCACCTACCCGGTCGGACGGATAATGAAATAAAAAATTTCTGGAACACCCATTTGAAGAAGAAGCTGATTCAGATGGGTTTTGATCCGATGACTCACCGGCCTCGGACCGATATCTTCTCTAGCTTGCCTCATCTTCTAGCTCTTGTCAATTTGAAAGAGCTCCTGGACCATGGAGGGCACACATCTTGGGATGAACAAGCTGTGAGACTACAAGCAGAAGCAGCTCAAATGGCTAGGCTCCAATACCTACAATGTCTCCTCCAACCTCCTCCTGCTAATAATTCCTTTGGAGCTGGTAGCCCAAGCAACCTAAATGATATCACTGACATGGAGACCATCAATCTTTTGAGCTCTCTCTGTTCATATCAGTTGGATCAAAACCCACCACAATATCCTGGAGCTAATTTCGAACCAGTCCAAGATCATAATTCAATCCCTTTCTCTCATTTGCCTGACTTACAAACCTATCAAACACCTTCACTGAACAACAACAAGGACATGGTTAACCAAGCTGAAGATCAATTTGCTGTAGTTTTGAGCCAAGGGCAAAACTCTCCCAACAATCCATGGAACATTCCTTCTTCTTCAAACACCACTCCATCTCCTACTTCTATGGCTCCTCCGGTGGCAGAGACTTCGATAAGCAACACCATGGGAGATGCTTGCAGTACTTCAAGCTTTGGAGGAGTGGCTAATTCGGCTTGGTCTGAGCTTCTTCTTGAGGACTCTTTTTTCAATGAGATTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

344

Amino Acids

38.13

Weight (kDa)

5.8

Isoelectric Point (pI)

51.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10280 AT5G65230
fragaria_vesca	FvH4_1g20680
malus_domestica	MD01G1031700.v1.1 MD15G1323500.v1.1
prunus_persica	Prupe.6G188300_v2.0.a1
pyrus_communis	pycom01g05920 pycom15g28470
rosa_chinensis	RchiOBHm_Chr2g0113131
rosa_laevigata	RLG00000018046 RLG00000018792
rosa_multiflora	Rmu_sc0005949.1_g000025
rosa_roxburghii	Rroxscaffold_2G00129590 Rroxscaffold_2G00129720
rosa_rugosa	Rorug02G0185700
rosa_samantha	Rh2AG240000 Rh2BG253900 Rh2CG244000 Rh2DG247900
rosa_wichuraiana	Rw2G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	150
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	2 cut(s)	359, 663
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	316
AcuI	CTGAAG	2 cut(s)	78, 816
AfaI	GTAC	1 cut(s)	952
AgsI	TTSAA	6 cut(s)	337, 436, 714, 870, 957, 1018
AjnI	CCWGG	3 cut(s)	47, 444, 676
AloI	GAACNNNNNNTCC	2 cut(s)	230, 262
Alw21I	GWGCWC	2 cut(s)	444, 635
Alw26I	GTCTC	5 cut(s)	15, 481, 542, 608, 908
AlwI	GGATC	2 cut(s)	359, 663
AoxI	GGCC	4 cut(s)	31, 97, 185, 380
ApeKI	GCWGC	1 cut(s)	503
ApoI	RAATTY	1 cut(s)	316
AspS9I	GGNCC	4 cut(s)	44, 51, 387, 448
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	2 cut(s)	275, 368
AsuII	TTCGAA	1 cut(s)	690
AvaII	GGWCC	4 cut(s)	44, 51, 387, 448
AxyI	CCTNAGG	1 cut(s)	182
BaeGI	GKGCMC	1 cut(s)	462
BalI	TGGCCA	1 cut(s)	99
BanII	GRGCYC	3 cut(s)	118, 444, 635
Bbv12I	GWGCWC	2 cut(s)	444, 635
BbvI	GCAGC	1 cut(s)	515
BccI	CCATC	5 cut(s)	162, 257, 349, 626, 889
BcgI	CGANNNNNNTGC	2 cut(s)	900, 934
BciT130I	CCWGG	3 cut(s)	49, 446, 678
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	5 cut(s)	15, 481, 542, 608, 908
BfaI	CTAG	3 cut(s)	402, 419, 516
BfmI	CTRYAG	1 cut(s)	810
BfuAI	ACCTGC	1 cut(s)	150
BisI	GCNGC	2 cut(s)	148, 504
BlsI	GCNGC	2 cut(s)	149, 505
BmcAI	AGTACT	1 cut(s)	952
Bme1390I	CCNGG	4 cut(s)	49, 291, 446, 678
Bme18I	GGWCC	4 cut(s)	44, 51, 387, 448
BmgT120I	GGNCC	4 cut(s)	44, 51, 387, 448
BmiI	GGNNCC	4 cut(s)	46, 53, 521, 900
BmrFI	CCNGG	4 cut(s)	49, 291, 446, 678
BmsI	GCATC	2 cut(s)	134, 931
BpmI	CTGGAG	2 cut(s)	130, 699
Bpu14I	TTCGAA	1 cut(s)	690
BpuEI	CTTGAG	3 cut(s)	20, 198, 1022
BpuMI	CCSGG	1 cut(s)	291
BsaI	GGTCTC	2 cut(s)	15, 608
BsaJI	CCNNGG	8 cut(s)	47, 100, 253, 383, 451, 823, 848, 933
BsaWI	WCCGGW	1 cut(s)	904
BsaXI	ACNNNNNCTCC	4 cut(s)	522, 552, 868, 898
Bse118I	RCCGGY	1 cut(s)	378
Bse1I	ACTGG	1 cut(s)	695
Bse21I	CCTNAGG	1 cut(s)	182
BseBI	CCWGG	3 cut(s)	49, 446, 678
BseDI	CCNNGG	8 cut(s)	47, 100, 253, 383, 451, 823, 848, 933
BseGI	GGATG	2 cut(s)	249, 478
BseMII	CTCAG	1 cut(s)	981
BseNI	ACTGG	1 cut(s)	695
BseRI	GAGGAG	4 cut(s)	530, 540, 891, 981
BseSI	GKGCMC	1 cut(s)	462
BseXI	GCAGC	1 cut(s)	515
Bsh1285I	CGRYCG	1 cut(s)	295
BshFI	GGCC	4 cut(s)	33, 99, 187, 382
BsiEI	CGRYCG	1 cut(s)	295
BsiHKAI	GWGCWC	2 cut(s)	444, 635
BsiSI	CCGG	3 cut(s)	291, 379, 905
BslFI	GGGAC	1 cut(s)	30
BsmAI	GTCTC	5 cut(s)	15, 481, 542, 608, 908
BsmFI	GGGAC	1 cut(s)	30
BsnI	GGCC	4 cut(s)	33, 99, 187, 382
Bso31I	GGTCTC	2 cut(s)	15, 608
Bsp119I	TTCGAA	1 cut(s)	690
Bsp1286I	GDGCHC	4 cut(s)	118, 444, 462, 635
Bsp143I	GATC	5 cut(s)	64, 364, 655, 703, 799
Bsp19I	CCATGG	4 cut(s)	100, 451, 848, 933
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	4 cut(s)	33, 99, 187, 382
BspCNI	CTCAG	1 cut(s)	982
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	4 cut(s)	46, 53, 521, 900
BspMI	ACCTGC	1 cut(s)	150
BspPI	GGATC	2 cut(s)	359, 663
BspT104I	TTCGAA	1 cut(s)	690
BspTNI	GGTCTC	2 cut(s)	15, 608
BsrFI	RCCGGY	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	695
BssAI	RCCGGY	1 cut(s)	378
BssECI	CCNNGG	8 cut(s)	47, 100, 253, 383, 451, 823, 848, 933
BssMI	GATC	5 cut(s)	64, 364, 655, 703, 799
BssT1I	CCWWGG	6 cut(s)	100, 253, 451, 823, 848, 933
Bst2UI	CCWGG	3 cut(s)	49, 446, 678
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstBI	TTCGAA	1 cut(s)	690
BstC8I	GCNNGC	3 cut(s)	133, 407, 946
BstDEI	CTNAG	2 cut(s)	182, 990
BstDSI	CCRYGG	4 cut(s)	100, 451, 848, 933
BstF5I	GGATG	2 cut(s)	249, 478
BstKTI	GATC	5 cut(s)	67, 367, 658, 706, 802
BstMAI	GTCTC	5 cut(s)	15, 481, 542, 608, 908
BstMBI	GATC	5 cut(s)	64, 364, 655, 703, 799
BstMCI	CGRYCG	1 cut(s)	295
BstMWI	GCNNNNNNNGC	5 cut(s)	105, 156, 503, 512, 980
BstNI	CCWGG	3 cut(s)	49, 446, 678
BstSCI	CCNGG	4 cut(s)	47, 289, 444, 676
BstSFI	CTRYAG	1 cut(s)	810
BstSLI	GKGCMC	1 cut(s)	462
BstV1I	GCAGC	1 cut(s)	515
Bsu36I	CCTNAGG	1 cut(s)	182
BsuRI	GGCC	4 cut(s)	33, 99, 187, 382
BtgI	CCRYGG	4 cut(s)	100, 451, 848, 933
BtsCI	GGATG	2 cut(s)	249, 478
BtsIMutI	CAGTG	2 cut(s)	603, 761
BveI	ACCTGC	1 cut(s)	150
Cac8I	GCNNGC	3 cut(s)	133, 407, 946
CciI	TCATGA	1 cut(s)	75
Cfr10I	RCCGGY	1 cut(s)	378
Cfr13I	GGNCC	4 cut(s)	44, 51, 387, 448
CpoI	CGGWCCG	1 cut(s)	387
Csp6I	GTAC	1 cut(s)	951
CspI	CGGWCCG	1 cut(s)	387
CviAII	CATG	7 cut(s)	76, 101, 452, 610, 781, 849, 934
CviQI	GTAC	1 cut(s)	951
DdeI	CTNAG	2 cut(s)	182, 990
DpnI	GATC	5 cut(s)	66, 366, 657, 705, 801
DpnII	GATC	5 cut(s)	64, 364, 655, 703, 799
EaeI	YGGCCR	1 cut(s)	97
Ecl136II	GAGCTC	2 cut(s)	442, 633
Eco130I	CCWWGG	6 cut(s)	100, 253, 451, 823, 848, 933
Eco24I	GRGCYC	3 cut(s)	118, 444, 635
Eco31I	GGTCTC	2 cut(s)	15, 608
Eco32I	GATATC	2 cut(s)	394, 601
Eco47I	GGWCC	4 cut(s)	44, 51, 387, 448
Eco53kI	GAGCTC	2 cut(s)	442, 633
Eco57I	CTGAAG	2 cut(s)	78, 816
Eco81I	CCTNAGG	1 cut(s)	182
EcoICRI	GAGCTC	2 cut(s)	442, 633
EcoO109I	RGGNCCY	1 cut(s)	44
EcoRII	CCWGG	3 cut(s)	47, 444, 676
EcoRV	GATATC	2 cut(s)	394, 601
EcoT14I	CCWWGG	6 cut(s)	100, 253, 451, 823, 848, 933
EcoT38I	GRGCYC	3 cut(s)	118, 444, 635
ErhI	CCWWGG	6 cut(s)	100, 253, 451, 823, 848, 933
FaeI	CATG	7 cut(s)	79, 104, 455, 613, 784, 852, 937
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	7 cut(s)	75, 100, 451, 609, 780, 848, 933
Fnu4HI	GCNGC	2 cut(s)	148, 504
FokI	GGATG	2 cut(s)	236, 485
FriOI	GRGCYC	3 cut(s)	118, 444, 635
Fsp4HI	GCNGC	2 cut(s)	148, 504
FspBI	CTAG	3 cut(s)	402, 419, 516
GluI	GCNGC	2 cut(s)	148, 504
GsuI	CTGGAG	2 cut(s)	130, 699
HaeIII	GGCC	4 cut(s)	33, 99, 187, 382
HapII	CCGG	3 cut(s)	291, 379, 905
Hin1II	CATG	7 cut(s)	79, 104, 455, 613, 784, 852, 937
HincII	GTYRAC	1 cut(s)	787
HindII	GTYRAC	1 cut(s)	787
HindIII	AAGCTT	1 cut(s)	958
HinfI	GANTC	3 cut(s)	349, 373, 1007
HpaI	GTTAAC	1 cut(s)	787
HpaII	CCGG	3 cut(s)	291, 379, 905
HphI	GGTGA	2 cut(s)	275, 368
Hpy166II	GTNNAC	1 cut(s)	787
Hpy188I	TCNGA	7 cut(s)	90, 237, 297, 354, 369, 387, 991
Hpy188III	TCNNGA	5 cut(s)	37, 76, 215, 322, 1001
Hpy8I	GTNNAC	1 cut(s)	787
HpyAV	CCTTC	3 cut(s)	128, 768, 870
HpyCH4V	TGCA	4 cut(s)	131, 159, 278, 948
HpyF10VI	GCNNNNNNNGC	5 cut(s)	105, 156, 503, 512, 980
HpyF3I	CTNAG	2 cut(s)	182, 990
Hsp92II	CATG	7 cut(s)	79, 104, 455, 613, 784, 852, 937
KspAI	GTTAAC	1 cut(s)	787
Kzo9I	GATC	5 cut(s)	64, 364, 655, 703, 799
LmnI	GCTCC	5 cut(s)	447, 525, 572, 680, 904
Lsp1109I	GCAGC	1 cut(s)	515
LweI	GCATC	2 cut(s)	134, 931
MaeI	CTAG	3 cut(s)	402, 419, 516
MaeIII	GTNAC	2 cut(s)	162, 281
MalI	GATC	5 cut(s)	66, 366, 657, 705, 801
MboI	GATC	5 cut(s)	64, 364, 655, 703, 799
MfeI	CAATTG	1 cut(s)	273
MhlI	GDGCHC	4 cut(s)	118, 444, 462, 635
MlsI	TGGCCA	1 cut(s)	99
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	2 cut(s)	367, 1001
MmeI	TCCRAC	3 cut(s)	275, 568, 633
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	3 cut(s)	137, 786, 1030
MslI	CAYNNNNRTG	1 cut(s)	608
Msp20I	TGGCCA	1 cut(s)	99
MspI	CCGG	3 cut(s)	291, 379, 905
MspR9I	CCNGG	4 cut(s)	49, 291, 446, 678
MunI	CAATTG	1 cut(s)	273
MvaI	CCWGG	3 cut(s)	49, 446, 678
MwoI	GCNNNNNNNGC	5 cut(s)	105, 156, 503, 512, 980
NciI	CCSGG	1 cut(s)	291
NcoI	CCATGG	4 cut(s)	100, 451, 848, 933
NdeII	GATC	5 cut(s)	64, 364, 655, 703, 799
NlaIII	CATG	7 cut(s)	79, 104, 455, 613, 784, 852, 937
NlaIV	GGNNCC	4 cut(s)	46, 53, 521, 900
NmuCI	GTSAC	1 cut(s)	281
NspV	TTCGAA	1 cut(s)	690
PagI	TCATGA	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	349
PfoI	TCCNGGA	2 cut(s)	444, 676
PkrI	GCNGC	2 cut(s)	149, 505
PleI	GAGTC	2 cut(s)	367, 1001
PpsI	GAGTC	2 cut(s)	367, 1001
PpuMI	RGGWCCY	1 cut(s)	44
Psp124BI	GAGCTC	2 cut(s)	444, 635
Psp5II	RGGWCCY	1 cut(s)	44
Psp6I	CCWGG	3 cut(s)	47, 444, 676
PspGI	CCWGG	3 cut(s)	47, 444, 676
PspN4I	GGNNCC	4 cut(s)	46, 53, 521, 900
PspPI	GGNCC	4 cut(s)	44, 51, 387, 448
PspPPI	RGGWCCY	1 cut(s)	44
RsaI	GTAC	1 cut(s)	952
RsaNI	GTAC	1 cut(s)	951
RseI	CAYNNNNRTG	1 cut(s)	608
Rsr2I	CGGWCCG	1 cut(s)	387
RsrII	CGGWCCG	1 cut(s)	387
SacI	GAGCTC	2 cut(s)	444, 635
SaqAI	TTAA	3 cut(s)	137, 786, 1030
SatI	GCNGC	2 cut(s)	148, 504
Sau3AI	GATC	5 cut(s)	64, 364, 655, 703, 799
Sau96I	GGNCC	4 cut(s)	44, 51, 387, 448
ScaI	AGTACT	1 cut(s)	952
SchI	GAGTC	2 cut(s)	367, 1001
ScrFI	CCNGG	4 cut(s)	49, 291, 446, 678
SduI	GDGCHC	4 cut(s)	118, 444, 462, 635
SfaNI	GCATC	2 cut(s)	134, 931
SfcI	CTRYAG	1 cut(s)	810
SfuI	TTCGAA	1 cut(s)	690
SinI	GGWCC	4 cut(s)	44, 51, 387, 448
SmiMI	CAYNNNNRTG	1 cut(s)	608
SmlI	CTYRAG	3 cut(s)	35, 213, 1001
SmoI	CTYRAG	3 cut(s)	35, 213, 1001
SsiI	CCGC	1 cut(s)	147
SspMI	CTAG	3 cut(s)	402, 419, 516
SstI	GAGCTC	2 cut(s)	444, 635
StyD4I	CCNGG	4 cut(s)	47, 289, 444, 676
StyI	CCWWGG	6 cut(s)	100, 253, 451, 823, 848, 933
TaqI	TCGA	2 cut(s)	690, 920
TaqII	GACCGA	1 cut(s)	404
TatI	WGTACW	1 cut(s)	950
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	1 cut(s)	349
Tru1I	TTAA	3 cut(s)	137, 786, 1030
Tru9I	TTAA	3 cut(s)	137, 786, 1030
TscAI	CASTG	2 cut(s)	610, 768
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	1 cut(s)	503
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	4 cut(s)	92, 321, 489, 633
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	2 cut(s)	610, 768
VpaK11BI	GGWCC	4 cut(s)	44, 51, 387, 448
XapI	RAATTY	1 cut(s)	316
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XspI	CTAG	3 cut(s)	402, 419, 516
ZrmI	AGTACT	1 cut(s)	952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.